mRNA_P-wetherbeei_contig5247.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5247.1.1
Unique NamemRNA_P-wetherbeei_contig5247.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig5247.1.1 vs. uniprot
Match: A0A4D9DFU0_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DFU0_9STRA)

HSP 1 Score: 73.9 bits (180), Expect = 1.570e-15
Identity = 37/72 (51.39%), Postives = 49/72 (68.06%), Query Frame = 1 
Query:    1 TALHMADDFWGGVTRFYNELVPWGDETKGLNSEEAKRSRMIAQYGEKTGLSPEEAAKEVDEFLTDRDAWIAK 216
            T L    DF    +RF NEL+PWGD  KG+ +   KR  M+ +Y EKTG+S E+A +EVDE+L D+DA+IAK
Sbjct:   20 TVLREGFDFMEMGSRFLNELLPWGDAKKGMWA--GKRDAMVVKYMEKTGISKEQAEREVDEYLKDKDAYIAK 89
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BLAST of mRNA_P-wetherbeei_contig5247.1.1 vs. uniprot
Match: W7TWP8_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TWP8_9STRA)

HSP 1 Score: 73.9 bits (180), Expect = 2.320e-14
Identity = 37/72 (51.39%), Postives = 49/72 (68.06%), Query Frame = 1 
Query:    1 TALHMADDFWGGVTRFYNELVPWGDETKGLNSEEAKRSRMIAQYGEKTGLSPEEAAKEVDEFLTDRDAWIAK 216
            T L    DF    +RF NEL+PWGD  KG+ +   KR  M+ +Y EKTG+S E+A +EVDE+L D+DA+IAK
Sbjct:   83 TVLREGFDFMEMGSRFLNELLPWGDAKKGMWA--GKRDAMVVKYMEKTGISKEQAEREVDEYLKDKDAYIAK 152
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5247.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A4D9DFU0_9STRA1.570e-1551.39Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
W7TWP8_9STRA2.320e-1451.39Uncharacterized protein n=1 Tax=Nannochloropsis ga... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5247contigP-wetherbeei_contig5247:1979..2358 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size222
Hectar predicted targeting categoryother localisation
Exons2
Cds size210
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186786.0413337-UTR-P-wetherbeei_contig5247:1978..19901683186786.0413337-UTR-P-wetherbeei_contig5247:1978..1990Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5247 1979..1990 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186786.0495143-CDS-P-wetherbeei_contig5247:1990..20981683186786.0495143-CDS-P-wetherbeei_contig5247:1990..2098Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5247 1991..2098 +
1683186786.0596237-CDS-P-wetherbeei_contig5247:2256..23581683186786.0596237-CDS-P-wetherbeei_contig5247:2256..2358Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5247 2257..2358 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5247.1.1prot_P-wetherbeei_contig5247.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5247 1991..2358 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5247.1.1

>prot_P-wetherbeei_contig5247.1.1 ID=prot_P-wetherbeei_contig5247.1.1|Name=mRNA_P-wetherbeei_contig5247.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=70bp
MADDFWGGVTRFYNELVPWGDETKGLNSEEAKRSRMIAQYGEKTGLSPEE
AAKEVDEFLTDRDAWIAKQK
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mRNA from alignment at P-wetherbeei_contig5247:1979..2358+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5247.1.1 ID=mRNA_P-wetherbeei_contig5247.1.1|Name=mRNA_P-wetherbeei_contig5247.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=380bp|location=Sequence derived from alignment at P-wetherbeei_contig5247:1979..2358+ (Phaeothamnion wetherbeei SAG_119_79)
ACAGCTTTGCATATGGCAGATGATTTCTGGGGTGGCGTGACACGGTTCTA
TAACGAGCTCGTGCCTTGGGGTGACGAGACAAAGGGATTGAACTCAGAAG
AAGCGAAGCGATCGCGCATGGTGAGCAAGGGTTATGAAAGTAAACGAAGC
TATGCTGGCACTTGAAGCTGATGTCTTGTTTTTTCCAACTTGTCTCCCGA
TTGGAGGCTAGTGCTAGCCTCTCAATGTAAGACGTTTTGCTCCCCTCTCC
GTGCCATATTTCACCCCACATCCCAAAGATCGCCCAATACGGCGAGAAAA
CCGGGCTCTCCCCCGAGGAGGCGGCAAAGGAAGTCGACGAATTCCTCACG
GACAGAGATGCATGGATTGCCAAGCAAAAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5247:1979..2358+

>mRNA_P-wetherbeei_contig5247.1.1 ID=mRNA_P-wetherbeei_contig5247.1.1|Name=mRNA_P-wetherbeei_contig5247.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=210bp|location=Sequence derived from alignment at P-wetherbeei_contig5247:1979..2358+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCAGATGATTTCTGGGGTGGCGTGACACGGTTCTATAACGAGCTCGT
GCCTTGGGGTGACGAGACAAAGGGATTGAACTCAGAAGAAGCGAAGCGAT
CGCGCATGATCGCCCAATACGGCGAGAAAACCGGGCTCTCCCCCGAGGAG
GCGGCAAAGGAAGTCGACGAATTCCTCACGGACAGAGATGCATGGATTGC
CAAGCAAAAG
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