mRNA_P-wetherbeei_contig52467.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig52467.1.1
Unique NamemRNA_P-wetherbeei_contig52467.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig52467.1.1 vs. uniprot
Match: A0A7X9ADV7_9BURK (Uncharacterized protein n=1 Tax=Burkholderiales bacterium TaxID=1891238 RepID=A0A7X9ADV7_9BURK)

HSP 1 Score: 69.3 bits (168), Expect = 2.230e-12
Identity = 32/56 (57.14%), Postives = 40/56 (71.43%), Query Frame = 1 
Query:    1 WYFPGERSYTEADVRAVARRVLRGLSEAGINAVFLESFLRGYSLAPAVQTGRHSVT 168
            W  PG RSYTE +VR VAR+ L  L+  GIN VFLE++LRGYS+AP +QT  +  T
Sbjct:   88 WILPGTRSYTENEVRRVARQTLESLAAEGINTVFLETWLRGYSIAPGIQTRNYRAT 143
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig52467.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7X9ADV7_9BURK2.230e-1257.14Uncharacterized protein n=1 Tax=Burkholderiales ba... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig52467contigP-wetherbeei_contig52467:112..282 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size171
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Cds size171
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186786.017896-CDS-P-wetherbeei_contig52467:111..2821683186786.017896-CDS-P-wetherbeei_contig52467:111..282Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig52467 112..282 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig52467.1.1prot_P-wetherbeei_contig52467.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig52467 112..282 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig52467.1.1

>prot_P-wetherbeei_contig52467.1.1 ID=prot_P-wetherbeei_contig52467.1.1|Name=mRNA_P-wetherbeei_contig52467.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=57bp
WYFPGERSYTEADVRAVARRVLRGLSEAGINAVFLESFLRGYSLAPAVQT
GRHSVTP
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mRNA from alignment at P-wetherbeei_contig52467:112..282-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig52467.1.1 ID=mRNA_P-wetherbeei_contig52467.1.1|Name=mRNA_P-wetherbeei_contig52467.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=171bp|location=Sequence derived from alignment at P-wetherbeei_contig52467:112..282- (Phaeothamnion wetherbeei SAG_119_79)
TGGTATTTTCCGGGAGAGCGCTCCTATACTGAGGCGGACGTGCGGGCAGT
CGCTCGTCGGGTTTTGCGGGGGCTTTCTGAAGCGGGCATCAATGCTGTCT
TTCTGGAGAGCTTTCTGCGGGGCTACAGCCTCGCCCCCGCGGTGCAAACG
GGACGCCATAGCGTTACGCCG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig52467:112..282-

>mRNA_P-wetherbeei_contig52467.1.1 ID=mRNA_P-wetherbeei_contig52467.1.1|Name=mRNA_P-wetherbeei_contig52467.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=171bp|location=Sequence derived from alignment at P-wetherbeei_contig52467:112..282- (Phaeothamnion wetherbeei SAG_119_79)
TGGTATTTTCCGGGAGAGCGCTCCTATACTGAGGCGGACGTGCGGGCAGT
CGCTCGTCGGGTTTTGCGGGGGCTTTCTGAAGCGGGCATCAATGCTGTCT
TTCTGGAGAGCTTTCTGCGGGGCTACAGCCTCGCCCCCGCGGTGCAAACG
GGACGCCATAGCGTTACGCCG
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