mRNA_P-wetherbeei_contig52460.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
|
Overview
Homology
BLAST of mRNA_P-wetherbeei_contig52460.1.1 vs. uniprot
Match: UPI001C3D4C77 (squalene synthase HpnC n=1 Tax=Miltoncostaea marina TaxID=2843215 RepID=UPI001C3D4C77) HSP 1 Score: 274 bits (700), Expect = 3.890e-90 Identity = 132/182 (72.53%), Postives = 144/182 (79.12%), Query Frame = 1
Query: 1 PRAIRADMATIYRFCRTTDDIGDEGAAPPQERLAALDAWEHQLRHAVDGDPGGAALGALAELIRRRDLPLAPFVRLIEANRMDQRRSRWDTSAELLDYCRHSATPVGEMVLGVLGYRDRWRVGLSDRTCTGLQLVNFWQDIARDLRDRDRIYLPRDQMLRFGVSEDDLRRPAATAGLRALVA 546
PR +R DMAT+Y FCR TDD+GDEG P ERL ALD WE +LR A G G A+A++I RR L L PF RLIEANRMDQRRSRWDT ELLDYCRHSATPVGEMVLGVLGYRDRWRV +SD TC GLQLVNFWQDIARDLR+RDR+YLPR M FGV+EDDLRR AAT +RALVA
Sbjct: 32 PRDVRDDMATVYAFCRATDDLGDEGPDGPGERLVALDRWEDELRRAAGGGAAGPLARAVADVIERRGLALDPFTRLIEANRMDQRRSRWDTHEELLDYCRHSATPVGEMVLGVLGYRDRWRVAMSDHTCVGLQLVNFWQDIARDLRERDRVYLPRAAMAAFGVTEDDLRRAAATPAVRALVA 213
BLAST of mRNA_P-wetherbeei_contig52460.1.1 vs. uniprot
Match: UPI001C3E34B8 (squalene synthase HpnC n=1 Tax=Miltoncostaea oceani TaxID=2843216 RepID=UPI001C3E34B8) HSP 1 Score: 268 bits (684), Expect = 1.010e-87 Identity = 127/182 (69.78%), Postives = 142/182 (78.02%), Query Frame = 1
Query: 1 PRAIRADMATIYRFCRTTDDIGDEGAAPPQERLAALDAWEHQLRHAVDGDPGGAALGALAELIRRRDLPLAPFVRLIEANRMDQRRSRWDTSAELLDYCRHSATPVGEMVLGVLGYRDRWRVGLSDRTCTGLQLVNFWQDIARDLRDRDRIYLPRDQMLRFGVSEDDLRRPAATAGLRALVA 546
P +R+DM +Y FCRTTDD+GDEG P RLAALDAWE LR A DG A A+AEL RR +PL F RL+EANRMDQRRSRWDT AEL+DYCRHSATPVGEMVLGVLGYRD WR GLSD TC GLQLVNFWQD+ RDLRDRDR+YLPR+ M GV+ DDLR PAAT G+RA++A
Sbjct: 31 PADVRSDMGVVYAFCRTTDDLGDEGDGGPAARLAALDAWEADLRRAADGGEAPALPAAVAELADRRGIPLDVFTRLVEANRMDQRRSRWDTHAELIDYCRHSATPVGEMVLGVLGYRDAWRTGLSDETCIGLQLVNFWQDVGRDLRDRDRVYLPREAMEAHGVTVDDLRLPAATPGVRAVIA 212
BLAST of mRNA_P-wetherbeei_contig52460.1.1 vs. uniprot
Match: A0A6I4Z7V9_9CHLR (Squalene synthase HpnC n=5 Tax=Dehalococcoidia bacterium TaxID=2026734 RepID=A0A6I4Z7V9_9CHLR) HSP 1 Score: 187 bits (476), Expect = 4.290e-56 Identity = 93/168 (55.36%), Postives = 118/168 (70.24%), Query Frame = 1
Query: 1 PRAIRADMATIYRFCRTTDDIGDEGAAPPQERLAALDAWEHQLRHAVDGDPGGAALGALAELIRRRDLPLAPFVRLIEANRMDQRRSRWDTSAELLDYCRHSATPVGEMVLGVLGYRDRWRVGLSDRTCTGLQLVNFWQDIARDLRDRDRIYLPRDQMLRFGVSEDDL 504
P+ +R +Y FCR TDD+GDE +RLA LD+WE LR AV G+P L ALA I R+++PL PF+RLIEANRMDQR SR+ T ++L YC +SATPVG+MVL VLGY D RV LSD+TC GLQL NFWQD++ D+ ++ RIYLP + + RFGV E +
Sbjct: 46 PKKLRRHFFAVYAFCRYTDDLGDEAEG---DRLALLDSWEQDLRDAVGGNPRRPLLIALARTIERKEIPLDPFLRLIEANRMDQRVSRFATYEDVLTYCSYSATPVGQMVLAVLGYTDAERVALSDQTCIGLQLANFWQDVSVDI-EKGRIYLPLEDLQRFGVDEQQI 209
BLAST of mRNA_P-wetherbeei_contig52460.1.1 vs. uniprot
Match: A0A7Y5H7L8_9BACT (Squalene synthase HpnC n=1 Tax=Candidatus Brocadiae bacterium TaxID=2517210 RepID=A0A7Y5H7L8_9BACT) HSP 1 Score: 183 bits (465), Expect = 1.310e-54 Identity = 92/174 (52.87%), Postives = 114/174 (65.52%), Query Frame = 1
Query: 1 PRAIRADMATIYRFCRTTDDIGDEGAAPPQERLAALDAWEHQLRHAVDGDPGGAALGALAELIRRRDLPLAPFVRLIEANRMDQRRSRWDTSAELLDYCRHSATPVGEMVLGVLGYRDRWRVGLSDRTCTGLQLVNFWQDIARDLRDRDRIYLPRDQMLRFGVSEDDL--RRPA 516
P+ +R D +Y FCRTTDD+GDE P +RLAALD WE ++R A +G L AL R + L L PF+RLIEANRMDQR++RW + A+L YC HSA PVG MVLG+ G D R LSD CTGLQL N WQD+ RD ++ RIYLP + + R GV E D+ RRP+
Sbjct: 36 PKDLRRDFFAVYAFCRTTDDLGDEA---PGDRLAALDDWERRVRAAWEGGAREPILAALGRTAREKQLRLEPFLRLIEANRMDQRQTRWASGADLRRYCAHSADPVGRMVLGLFGQDDERRGALSDEICTGLQLANHWQDVGRDAVEKGRIYLPLEDLRRHGVPEADILARRPS 206
BLAST of mRNA_P-wetherbeei_contig52460.1.1 vs. uniprot
Match: A0A7V8E861_9BACT (Squalene n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A7V8E861_9BACT) HSP 1 Score: 182 bits (461), Expect = 4.830e-54 Identity = 92/168 (54.76%), Postives = 110/168 (65.48%), Query Frame = 1
Query: 1 PRAIRADMATIYRFCRTTDDIGDEGAAPPQERLAALDAWEHQLRHAVDGDPGGAALGALAELIRRRDLPLAPFVRLIEANRMDQRRSRWDTSAELLDYCRHSATPVGEMVLGVLGYRDRWRVGLSDRTCTGLQLVNFWQDIARDLRDRDRIYLPRDQMLRFGVSEDDL 504
P+ +R D +Y FCRTTDDIGDE + +RLAALDAWE +R G+P L ALA IR R L PF+RLIEANRMDQR+SRW+T +L YC HSA PVG MVLG+ G D R LSD CTGLQL N WQD+ RD ++ RIYLP + + GV E D+
Sbjct: 33 PKEMRRDFFAVYAFCRTTDDIGDEASG---DRLAALDAWEKDVRKCWGGEPAELMLVALARTIRERKLRQDPFLRLIEANRMDQRQSRWETWDDLRLYCAHSADPVGRMVLGLFGQDDAKRGPLSDAICTGLQLANHWQDVGRDAAEKGRIYLPLEDLEAHGVKEADV 197
BLAST of mRNA_P-wetherbeei_contig52460.1.1 vs. uniprot
Match: A0A662EWW5_9BACT (Squalene synthase HpnC (Fragment) n=1 Tax=Candidatus Acetothermia bacterium TaxID=2053493 RepID=A0A662EWW5_9BACT) HSP 1 Score: 182 bits (461), Expect = 6.410e-54 Identity = 95/181 (52.49%), Postives = 116/181 (64.09%), Query Frame = 1
Query: 1 PRAIRADMATIYRFCRTTDDIGDEGAAPPQERLAALDAWEHQLRHAVDGDPGGAALGALAELIRRRDLPLAPFVRLIEANRMDQRRSRWDTSAELLDYCRHSATPVGEMVLGVLGYRDRWRVGLSDRTCTGLQLVNFWQDIARDLRDRDRIYLPRDQMLRFGVSEDDLRRPAATAGLRALV 543
PR +R +A +Y FCRT DDIGDE P +R+A LD +E +L+ A G P + AL + I DLP PF++LIEANR+DQR R+ ELL YC HSA PVG + L + GYRD LSD TCT LQL NFWQDI RD + RIYLP+D+M RFGVSE D+ A +RALV
Sbjct: 45 PRRMRVHIAAVYAFCRTVDDIGDEA---PGDRIALLDRFEEELQSAYSGSPRHPVIVALKQTIAEFDLPAEPFLKLIEANRIDQRVHRYANFGELLHYCDHSANPVGRLFLMLYGYRDEELFRLSDNTCTALQLTNFWQDIRRDY-EMGRIYLPQDEMERFGVSESDIAATRANERVRALV 221
BLAST of mRNA_P-wetherbeei_contig52460.1.1 vs. uniprot
Match: A0A523Z022_9CHLR (Squalene synthase HpnC n=1 Tax=Dehalococcoidia bacterium TaxID=2026734 RepID=A0A523Z022_9CHLR) HSP 1 Score: 181 bits (460), Expect = 1.410e-53 Identity = 92/168 (54.76%), Postives = 111/168 (66.07%), Query Frame = 1
Query: 1 PRAIRADMATIYRFCRTTDDIGDEGAAPPQERLAALDAWEHQLRHAVDGDPGGAALGALAELIRRRDLPLAPFVRLIEANRMDQRRSRWDTSAELLDYCRHSATPVGEMVLGVLGYRDRWRVGLSDRTCTGLQLVNFWQDIARDLRDRDRIYLPRDQMLRFGVSEDDL 504
PR +R M +Y +CR DD+GDE +RLA LD W ++R DG P A AL E I R D+P PF+RLIEANRMDQR +R+ T ELL YC +SA PVG +VL + GYRD R LSD TCT LQL NFWQD+ RDL D+ RIY+P ++M RFG SE DL
Sbjct: 51 PRTLRPHMYAVYAYCRGVDDLGDEAEG---DRLALLDDWGAEVRRCYDGSPRHPAFVALRETIHRFDIPQEPFLRLIEANRMDQRVNRYRTYGELLGYCENSANPVGHLVLHLFGYRDEERQRLSDATCTALQLTNFWQDVRRDL-DKGRIYIPLEEMERFGYSEADL 214
BLAST of mRNA_P-wetherbeei_contig52460.1.1 vs. uniprot
Match: A0A7C2YGV9_9CHLR (Squalene synthase HpnC n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A7C2YGV9_9CHLR) HSP 1 Score: 179 bits (454), Expect = 5.800e-53 Identity = 92/182 (50.55%), Postives = 115/182 (63.19%), Query Frame = 1
Query: 1 PRAIRADMATIYRFCRTTDDIGDEGAAPPQERLAALDAWEHQLRHAVDGDPGGAALGALAELIRRRDLPLAPFVRLIEANRMDQRRSRWDTSAELLDYCRHSATPVGEMVLGVLGYRDRWRVGLSDRTCTGLQLVNFWQDIARDLRDRDRIYLPRDQMLRFGVSEDDLRRPAATAGLRALVA 546
PR +R M +Y +CR DD+GDE +RLA LD WE +LR A +G ALA +R +P PF++LIEANRMDQR+ R+ T A+LL YC HSA PVG +VL + GYRDR R LSD TCTGLQL NFWQD++RDL + RIY+P + M FG E+DL R L+A
Sbjct: 27 PRRLRPHMYVVYAYCRGVDDLGDEAEG---DRLALLDDWEAELRRAYEGKARHPVFVALAHTVREFRIPPEPFLKLIEANRMDQRQKRYPTYADLLRYCEHSANPVGHLVLYLFGYRDRERQRLSDATCTGLQLANFWQDVSRDL-EMGRIYIPLEDMAAFGYGEEDLLARICDERFRRLMA 204
BLAST of mRNA_P-wetherbeei_contig52460.1.1 vs. uniprot
Match: A0A2H5YDX8_9BACT (All-trans-phytoene synthase n=1 Tax=bacterium HR23 TaxID=2035418 RepID=A0A2H5YDX8_9BACT) HSP 1 Score: 179 bits (454), Expect = 1.160e-52 Identity = 90/182 (49.45%), Postives = 115/182 (63.19%), Query Frame = 1
Query: 1 PRAIRADMATIYRFCRTTDDIGDEGAAPPQERLAALDAWEHQLRHAVDGDPGGAALGALAELIRRRDLPLAPFVRLIEANRMDQRRSRWDTSAELLDYCRHSATPVGEMVLGVLGYRDRWRVGLSDRTCTGLQLVNFWQDIARDLRDRDRIYLPRDQMLRFGVSEDDLRRPAATAGLRALVA 546
PR + +Y FCRT DD+GDE + +RLA LDAWE LR G P L AL IR D+P+ PF++LIEANR+DQR SRW T +LL YC HSA PVG + L + GYRD+ R L+D TCT LQL NFWQD+ RD ++ R+Y+P + M RFG +E++L R R L+A
Sbjct: 49 PRDKLPHVCALYAFCRTVDDLGDEASG---DRLALLDAWEADLRLCYTGTPRHPYLKALQATIRAFDIPITPFLKLIEANRLDQRHSRWPTYQDLLFYCDHSANPVGHLFLYLFGYRDQERQRLADATCTALQLTNFWQDVRRDW-EKGRVYIPMEDMARFGYTEEELARGVVNDAFRRLMA 226
BLAST of mRNA_P-wetherbeei_contig52460.1.1 vs. uniprot
Match: A0A662L287_9ARCH (Squalene synthase HpnC n=1 Tax=Thermoplasmata archaeon TaxID=1906666 RepID=A0A662L287_9ARCH) HSP 1 Score: 178 bits (452), Expect = 1.860e-52 Identity = 94/182 (51.65%), Postives = 115/182 (63.19%), Query Frame = 1
Query: 1 PRAIRADMATIYRFCRTTDDIGDEGAAPPQERLAALDAWEHQLRHAVDGDPGGAALGALAELIRRRDLPLAPFVRLIEANRMDQRRSRWDTSAELLDYCRHSATPVGEMVLGVLGYRDRWRVGLSDRTCTGLQLVNFWQDIARDLRDRDRIYLPRDQMLRFGVSEDDLRRPAATAGLRALVA 546
PR +R + ++Y F RTTDD+GDE P +RLA LD WE +L A G + AL E R DLP+ PF ++I+ANRMDQR +R+ T ELL YC HSA PVG + L + GYRD LSD+TCT LQL NFWQD+ARDL RIY+P + M FG SEDDLRR R L+A
Sbjct: 45 PRRLRKHIFSLYGFFRTTDDLGDEA---PGDRLALLDRWEEELEAAFQGKARHPVMVALGETAREFDLPIEPFRKIIQANRMDQRTNRYRTFDELLHYCDHSANPVGRLYLMLFGYRDEELFRLSDKTCTALQLANFWQDVARDLAC-GRIYIPLEDMDAFGYSEDDLRRKVVDGRFRKLMA 222 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig52460.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig52460.1.1 >prot_P-wetherbeei_contig52460.1.1 ID=prot_P-wetherbeei_contig52460.1.1|Name=mRNA_P-wetherbeei_contig52460.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=175bp MATIYRFCRTTDDIGDEGAAPPQERLAALDAWEHQLRHAVDGDPGGAALGback to top mRNA from alignment at P-wetherbeei_contig52460:1..546+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig52460.1.1 ID=mRNA_P-wetherbeei_contig52460.1.1|Name=mRNA_P-wetherbeei_contig52460.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=546bp|location=Sequence derived from alignment at P-wetherbeei_contig52460:1..546+ (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig52460:1..546+ >mRNA_P-wetherbeei_contig52460.1.1 ID=mRNA_P-wetherbeei_contig52460.1.1|Name=mRNA_P-wetherbeei_contig52460.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=525bp|location=Sequence derived from alignment at P-wetherbeei_contig52460:1..546+ (Phaeothamnion wetherbeei SAG_119_79)back to top |