mRNA_P-wetherbeei_contig52418.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig52418.1.1
Unique NamemRNA_P-wetherbeei_contig52418.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig52418.1.1 vs. uniprot
Match: A0A2M8U3Q0_9PROT (Uncharacterized protein n=1 Tax=Ferrovibrio sp. TaxID=1917215 RepID=A0A2M8U3Q0_9PROT)

HSP 1 Score: 51.2 bits (121), Expect = 1.780e-6
Identity = 25/83 (30.12%), Postives = 44/83 (53.01%), Query Frame = 1 
Query:   10 QTFNVAAVAIANVQIAIVHVDPASCSTPEMQSRSMKFFQARLQGKHVVLMYVDMTRKPVFLGPAHLAQALRGKGLSEFQWQKV 258
            Q +  A++ + N  I +++V  ++ +T EM  RS+   +   +   VVL    +     F+GP H+   LRG+GL EF+W  +
Sbjct:    3 QVYQSASIQLGNEVITVIYVSYSAIATDEMAGRSLAAMKPLFRNSTVVLAAQGVNLACEFVGPKHVTDILRGRGLHEFKWYPI 85
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig52418.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2M8U3Q0_9PROT1.780e-630.12Uncharacterized protein n=1 Tax=Ferrovibrio sp. Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig52418contigP-wetherbeei_contig52418:98..367 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size270
Hectar predicted targeting categoryother localisation
Exons1
Cds size270
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186785.4246922-CDS-P-wetherbeei_contig52418:97..3671683186785.4246922-CDS-P-wetherbeei_contig52418:97..367Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig52418 98..367 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig52418.1.1prot_P-wetherbeei_contig52418.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig52418 98..367 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig52418.1.1

>prot_P-wetherbeei_contig52418.1.1 ID=prot_P-wetherbeei_contig52418.1.1|Name=mRNA_P-wetherbeei_contig52418.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=90bp
MAEQTFNVAAVAIANVQIAIVHVDPASCSTPEMQSRSMKFFQARLQGKHV
VLMYVDMTRKPVFLGPAHLAQALRGKGLSEFQWQKVVFR*
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mRNA from alignment at P-wetherbeei_contig52418:98..367-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig52418.1.1 ID=mRNA_P-wetherbeei_contig52418.1.1|Name=mRNA_P-wetherbeei_contig52418.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=270bp|location=Sequence derived from alignment at P-wetherbeei_contig52418:98..367- (Phaeothamnion wetherbeei SAG_119_79)
ATGGCCGAGCAGACCTTCAACGTAGCCGCCGTCGCGATCGCCAATGTGCA
GATCGCCATCGTCCATGTCGACCCGGCCTCGTGCTCGACGCCCGAGATGC
AGTCGCGTTCCATGAAGTTCTTCCAGGCGCGCCTGCAGGGCAAGCACGTG
GTCCTCATGTATGTGGACATGACGCGCAAGCCCGTGTTCCTCGGGCCGGC
CCATCTGGCGCAGGCGCTGCGCGGCAAGGGCCTTTCCGAGTTCCAGTGGC
AGAAGGTCGTCTTCCGTTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig52418:98..367-

>mRNA_P-wetherbeei_contig52418.1.1 ID=mRNA_P-wetherbeei_contig52418.1.1|Name=mRNA_P-wetherbeei_contig52418.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=270bp|location=Sequence derived from alignment at P-wetherbeei_contig52418:98..367- (Phaeothamnion wetherbeei SAG_119_79)
ATGGCCGAGCAGACCTTCAACGTAGCCGCCGTCGCGATCGCCAATGTGCA
GATCGCCATCGTCCATGTCGACCCGGCCTCGTGCTCGACGCCCGAGATGC
AGTCGCGTTCCATGAAGTTCTTCCAGGCGCGCCTGCAGGGCAAGCACGTG
GTCCTCATGTATGTGGACATGACGCGCAAGCCCGTGTTCCTCGGGCCGGC
CCATCTGGCGCAGGCGCTGCGCGGCAAGGGCCTTTCCGAGTTCCAGTGGC
AGAAGGTCGTCTTCCGTTGA
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