prot_P-wetherbeei_contig524.1.1 (polypeptide) Phaeothamnion wetherbeei SAG_119_79

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-wetherbeei_contig524.1.1
Unique Nameprot_P-wetherbeei_contig524.1.1
Typepolypeptide
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Sequence length75
Homology
BLAST of mRNA_P-wetherbeei_contig524.1.1 vs. uniprot
Match: A0A836CHC6_9STRA (RRM domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHC6_9STRA)

HSP 1 Score: 105 bits (263), Expect = 1.290e-25
Identity = 52/73 (71.23%), Postives = 63/73 (86.30%), Query Frame = 0
Query:    1 QIIREQWNKKSKGYGFVSFLDGLEMMRALREMNGKYLGNRPMKISKSTWKDREIQEVRKKEKKKKKLAKALGM 73
            +++RE+ N KSKGYGFVSF DG +M+RALRE NGKYLGNRPMKISKS+W +R I+EVRKKEKK K+  KALG+
Sbjct:  288 KVVREKHNNKSKGYGFVSFADGFDMVRALREKNGKYLGNRPMKISKSSWHERNIKEVRKKEKKNKREKKALGL 360          
BLAST of mRNA_P-wetherbeei_contig524.1.1 vs. uniprot
Match: A0A6H5KAJ6_9PHAE (RRM domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAJ6_9PHAE)

HSP 1 Score: 107 bits (266), Expect = 2.020e-25
Identity = 50/73 (68.49%), Postives = 64/73 (87.67%), Query Frame = 0
Query:    1 QIIREQWNKKSKGYGFVSFLDGLEMMRALREMNGKYLGNRPMKISKSTWKDREIQEVRKKEKKKKKLAKALGM 73
            ++IRE+WNKKSKGYGFVSFLDG++M++ALRE  GKYLGNRPMKISKSTWK+R+++EV+KK      + KALG+
Sbjct:  463 KVIREKWNKKSKGYGFVSFLDGMDMLKALREQQGKYLGNRPMKISKSTWKERDVKEVKKKTXXXXXVKKALGL 535          
BLAST of mRNA_P-wetherbeei_contig524.1.1 vs. uniprot
Match: D8LJT5_ECTSI (Temporarily Assigned Gene name family member (Tag-262) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJT5_ECTSI)

HSP 1 Score: 101 bits (252), Expect = 1.690e-23
Identity = 44/57 (77.19%), Postives = 55/57 (96.49%), Query Frame = 0
Query:    1 QIIREQWNKKSKGYGFVSFLDGLEMMRALREMNGKYLGNRPMKISKSTWKDREIQEV 57
            +IIRE+WNKKSKGYGFVSFLDG++M++ALRE  GKYLGNRPMKISKSTWK+R+++E+
Sbjct:  444 KIIREKWNKKSKGYGFVSFLDGMDMLKALREQQGKYLGNRPMKISKSTWKERDVKEL 500          
BLAST of mRNA_P-wetherbeei_contig524.1.1 vs. uniprot
Match: A0A7S3JN71_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JN71_9STRA)

HSP 1 Score: 93.6 bits (231), Expect = 2.560e-22
Identity = 45/73 (61.64%), Postives = 59/73 (80.82%), Query Frame = 0
Query:    1 QIIREQWNKKSKGYGFVSFLDGLEMMRALREMNGKYLGNRPMKISKSTWKDREIQEVRKKEKKKKKLAKALGM 73
            ++IRE+++ KSKGYGFVSFLD  +  +ALREMNGKY+GNRP K+ +S WKDR ++EVRKKEKK  K  K+ G+
Sbjct:  109 KVIREKFSNKSKGYGFVSFLDPYDCAKALREMNGKYIGNRPCKLQRSNWKDRTLKEVRKKEKKDSKTKKSWGI 181          
BLAST of mRNA_P-wetherbeei_contig524.1.1 vs. uniprot
Match: A0A7S1XX46_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XX46_9STRA)

HSP 1 Score: 93.2 bits (230), Expect = 8.140e-22
Identity = 45/73 (61.64%), Postives = 59/73 (80.82%), Query Frame = 0
Query:    1 QIIREQWNKKSKGYGFVSFLDGLEMMRALREMNGKYLGNRPMKISKSTWKDREIQEVRKKEKKKKKLAKALGM 73
            +I R++   K + YGFVSFLDG++MM+ALRE NGKY GNRPMK+SKSTWK+R+  E+RKK++ KKK  K LG+
Sbjct:  146 RICRDRARNKVRQYGFVSFLDGMDMMKALREQNGKYCGNRPMKLSKSTWKERDRSEIRKKDRAKKKFNKKLGV 218          
BLAST of mRNA_P-wetherbeei_contig524.1.1 vs. uniprot
Match: A0A482SES9_9ARCH (RRM domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SES9_9ARCH)

HSP 1 Score: 89.0 bits (219), Expect = 9.740e-22
Identity = 45/72 (62.50%), Postives = 59/72 (81.94%), Query Frame = 0
Query:    2 IIREQWNKKSKGYGFVSFLDGLEMMRALREMNGKYLGNRPMKISKSTWKDREIQEVRKKEKKKKKLAKALGM 73
            +IRE    KSKG+GFVSFLD ++  +A+REMNGKYL NRPMKI KSTW+DR+I+E  KKE KK+K+ ++LG+
Sbjct:    1 MIREGDKGKSKGFGFVSFLDPMDCAKAIREMNGKYLQNRPMKIRKSTWQDRDIKESAKKENKKRKMYESLGI 72          
BLAST of mRNA_P-wetherbeei_contig524.1.1 vs. uniprot
Match: A0A6F9DR14_9ASCI (RNA-binding protein 42 n=1 Tax=Phallusia mammillata TaxID=59560 RepID=A0A6F9DR14_9ASCI)

HSP 1 Score: 92.0 bits (227), Expect = 2.880e-20
Identity = 45/67 (67.16%), Postives = 57/67 (85.07%), Query Frame = 0
Query:    1 QIIREQWNKKSKGYGFVSFLDGLEMMRALREMNGKYLGNRPMKISKSTWKDREIQEVRKKEKKKKKL 67
            +++RE+ NKKS+GYGFVSF D  + +RA+REMNGKY+GNRP+K+ KSTWKDR I  VRKK K+KKKL
Sbjct:  336 RVVREKNNKKSRGYGFVSFKDPSDFIRAMREMNGKYVGNRPIKLRKSTWKDRNIDVVRKKVKEKKKL 402          
BLAST of mRNA_P-wetherbeei_contig524.1.1 vs. uniprot
Match: A0A7R9U4X3_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U4X3_9STRA)

HSP 1 Score: 87.4 bits (215), Expect = 4.360e-20
Identity = 40/73 (54.79%), Postives = 58/73 (79.45%), Query Frame = 0
Query:    1 QIIREQWNKKSKGYGFVSFLDGLEMMRALREMNGKYLGNRPMKISKSTWKDREIQEVRKKEKKKKKLAKALGM 73
            +I R++   K + +GFVSFLDG++ M+A+RE  GKY G RPMKI +STWKDR++QE++KK+K++KK  K LG+
Sbjct:   93 KICRDRARNKVRQFGFVSFLDGMDCMKAMREQQGKYCGQRPMKIRRSTWKDRDVQELKKKDKRRKKFEKKLGL 165          
BLAST of mRNA_P-wetherbeei_contig524.1.1 vs. uniprot
Match: V4B0Y0_LOTGI (RNA-binding protein 42 n=1 Tax=Lottia gigantea TaxID=225164 RepID=V4B0Y0_LOTGI)

HSP 1 Score: 86.3 bits (212), Expect = 6.320e-20
Identity = 42/67 (62.69%), Postives = 56/67 (83.58%), Query Frame = 0
Query:    1 QIIREQWNKKSKGYGFVSFLDGLEMMRALREMNGKYLGNRPMKISKSTWKDREIQEVRKKEKKKKKL 67
            +I+R++ + KSKGYGFVSF D  +  RA+R+MNGKY+GNRP+K+ KSTW+DR I  VRKKEK+KK+L
Sbjct:   70 KIVRDRRSNKSKGYGFVSFKDPGDFTRAMRDMNGKYVGNRPIKLRKSTWRDRNIDIVRKKEKEKKRL 136          
BLAST of mRNA_P-wetherbeei_contig524.1.1 vs. uniprot
Match: A0A4D9D1U7_9STRA (RRM domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D1U7_9STRA)

HSP 1 Score: 90.5 bits (223), Expect = 6.520e-20
Identity = 43/73 (58.90%), Postives = 60/73 (82.19%), Query Frame = 0
Query:    1 QIIREQWNKKSKGYGFVSFLDGLEMMRALREMNGKYLGNRPMKISKSTWKDREIQEVRKKEKKKKKLAKALGM 73
            +++R++   KS+GYGFVSFLD LE ++ALREMNGKY+G+RP+K+ K  WK+R+++EVRKKEK KKK    LG+
Sbjct:  275 KVLRDRGTGKSRGYGFVSFLDPLEGLKALREMNGKYVGSRPVKLRKCDWKERDLKEVRKKEKTKKKFLSKLGL 347          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig524.1.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CHC6_9STRA1.290e-2571.23RRM domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A6H5KAJ6_9PHAE2.020e-2568.49RRM domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LJT5_ECTSI1.690e-2377.19Temporarily Assigned Gene name family member (Tag-... [more]
A0A7S3JN71_9STRA2.560e-2261.64Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A7S1XX46_9STRA8.140e-2261.64Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A482SES9_9ARCH9.740e-2262.50RRM domain-containing protein n=1 Tax=archaeon Tax... [more]
A0A6F9DR14_9ASCI2.880e-2067.16RNA-binding protein 42 n=1 Tax=Phallusia mammillat... [more]
A0A7R9U4X3_9STRA4.360e-2054.79Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
V4B0Y0_LOTGI6.320e-2062.69RNA-binding protein 42 n=1 Tax=Lottia gigantea Tax... [more]
A0A4D9D1U7_9STRA6.520e-2058.90RRM domain-containing protein n=2 Tax=Monodopsidac... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 50..70
NoneNo IPR availablePANTHERPTHR13952:SF8RNA BINDING MOTIF PROTEIN HOMOLOGcoord: 1..66
NoneNo IPR availablePANTHERPTHR13952U1 SMALL NUCLEAR RIBONUCLEOPROTEIN 70 KDcoord: 1..66
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 1..71
e-value: 1.8E-12
score: 49.5
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 2..43
e-value: 1.0E-7
score: 31.7
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 1..49
score: 9.865582
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 2..54

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig524contigP-wetherbeei_contig524:206..634 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig524.1.1mRNA_P-wetherbeei_contig524.1.1Phaeothamnion wetherbeei SAG_119_79mRNAP-wetherbeei_contig524 206..634 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-wetherbeei_contig524.1.1 ID=prot_P-wetherbeei_contig524.1.1|Name=mRNA_P-wetherbeei_contig524.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=75bp
QIIREQWNKKSKGYGFVSFLDGLEMMRALREMNGKYLGNRPMKISKSTWK
DREIQEVRKKEKKKKKLAKALGMA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR012677Nucleotide-bd_a/b_plait_sf
IPR000504RRM_dom
IPR035979RBD_domain_sf