mRNA_P-wetherbeei_contig524.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig524.1.1
Unique NamemRNA_P-wetherbeei_contig524.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
[Close]
BLAST of mRNA_P-wetherbeei_contig524.1.1 vs. uniprot
Match: A0A836CHC6_9STRA (RRM domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHC6_9STRA)

HSP 1 Score: 105 bits (263), Expect = 1.290e-25
Identity = 52/73 (71.23%), Postives = 63/73 (86.30%), Query Frame = 1 
Query:    1 QIIREQWNKKSKGYGFVSFLDGLEMMRALREMNGKYLGNRPMKISKSTWKDREIQEVRKKEKKKKKLAKALGM 219
            +++RE+ N KSKGYGFVSF DG +M+RALRE NGKYLGNRPMKISKS+W +R I+EVRKKEKK K+  KALG+
Sbjct:  288 KVVREKHNNKSKGYGFVSFADGFDMVRALREKNGKYLGNRPMKISKSSWHERNIKEVRKKEKKNKREKKALGL 360
[Close]
BLAST of mRNA_P-wetherbeei_contig524.1.1 vs. uniprot
Match: A0A6H5KAJ6_9PHAE (RRM domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAJ6_9PHAE)

HSP 1 Score: 107 bits (266), Expect = 2.020e-25
Identity = 50/73 (68.49%), Postives = 64/73 (87.67%), Query Frame = 1 
Query:    1 QIIREQWNKKSKGYGFVSFLDGLEMMRALREMNGKYLGNRPMKISKSTWKDREIQEVRKKEKKKKKLAKALGM 219
            ++IRE+WNKKSKGYGFVSFLDG++M++ALRE  GKYLGNRPMKISKSTWK+R+++EV+KK      + KALG+
Sbjct:  463 KVIREKWNKKSKGYGFVSFLDGMDMLKALREQQGKYLGNRPMKISKSTWKERDVKEVKKKTXXXXXVKKALGL 535
[Close]
BLAST of mRNA_P-wetherbeei_contig524.1.1 vs. uniprot
Match: D8LJT5_ECTSI (Temporarily Assigned Gene name family member (Tag-262) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJT5_ECTSI)

HSP 1 Score: 101 bits (252), Expect = 1.690e-23
Identity = 44/57 (77.19%), Postives = 55/57 (96.49%), Query Frame = 1 
Query:    1 QIIREQWNKKSKGYGFVSFLDGLEMMRALREMNGKYLGNRPMKISKSTWKDREIQEV 171
            +IIRE+WNKKSKGYGFVSFLDG++M++ALRE  GKYLGNRPMKISKSTWK+R+++E+
Sbjct:  444 KIIREKWNKKSKGYGFVSFLDGMDMLKALREQQGKYLGNRPMKISKSTWKERDVKEL 500
[Close]
BLAST of mRNA_P-wetherbeei_contig524.1.1 vs. uniprot
Match: A0A7S3JN71_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JN71_9STRA)

HSP 1 Score: 93.6 bits (231), Expect = 2.560e-22
Identity = 45/73 (61.64%), Postives = 59/73 (80.82%), Query Frame = 1 
Query:    1 QIIREQWNKKSKGYGFVSFLDGLEMMRALREMNGKYLGNRPMKISKSTWKDREIQEVRKKEKKKKKLAKALGM 219
            ++IRE+++ KSKGYGFVSFLD  +  +ALREMNGKY+GNRP K+ +S WKDR ++EVRKKEKK  K  K+ G+
Sbjct:  109 KVIREKFSNKSKGYGFVSFLDPYDCAKALREMNGKYIGNRPCKLQRSNWKDRTLKEVRKKEKKDSKTKKSWGI 181
[Close]
BLAST of mRNA_P-wetherbeei_contig524.1.1 vs. uniprot
Match: A0A7S1XX46_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XX46_9STRA)

HSP 1 Score: 93.2 bits (230), Expect = 8.140e-22
Identity = 45/73 (61.64%), Postives = 59/73 (80.82%), Query Frame = 1 
Query:    1 QIIREQWNKKSKGYGFVSFLDGLEMMRALREMNGKYLGNRPMKISKSTWKDREIQEVRKKEKKKKKLAKALGM 219
            +I R++   K + YGFVSFLDG++MM+ALRE NGKY GNRPMK+SKSTWK+R+  E+RKK++ KKK  K LG+
Sbjct:  146 RICRDRARNKVRQYGFVSFLDGMDMMKALREQNGKYCGNRPMKLSKSTWKERDRSEIRKKDRAKKKFNKKLGV 218
[Close]
BLAST of mRNA_P-wetherbeei_contig524.1.1 vs. uniprot
Match: A0A482SES9_9ARCH (RRM domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SES9_9ARCH)

HSP 1 Score: 89.0 bits (219), Expect = 9.740e-22
Identity = 45/72 (62.50%), Postives = 59/72 (81.94%), Query Frame = 1 
Query:    4 IIREQWNKKSKGYGFVSFLDGLEMMRALREMNGKYLGNRPMKISKSTWKDREIQEVRKKEKKKKKLAKALGM 219
            +IRE    KSKG+GFVSFLD ++  +A+REMNGKYL NRPMKI KSTW+DR+I+E  KKE KK+K+ ++LG+
Sbjct:    1 MIREGDKGKSKGFGFVSFLDPMDCAKAIREMNGKYLQNRPMKIRKSTWQDRDIKESAKKENKKRKMYESLGI 72
[Close]
BLAST of mRNA_P-wetherbeei_contig524.1.1 vs. uniprot
Match: A0A6F9DR14_9ASCI (RNA-binding protein 42 n=1 Tax=Phallusia mammillata TaxID=59560 RepID=A0A6F9DR14_9ASCI)

HSP 1 Score: 92.0 bits (227), Expect = 2.880e-20
Identity = 45/67 (67.16%), Postives = 57/67 (85.07%), Query Frame = 1 
Query:    1 QIIREQWNKKSKGYGFVSFLDGLEMMRALREMNGKYLGNRPMKISKSTWKDREIQEVRKKEKKKKKL 201
            +++RE+ NKKS+GYGFVSF D  + +RA+REMNGKY+GNRP+K+ KSTWKDR I  VRKK K+KKKL
Sbjct:  336 RVVREKNNKKSRGYGFVSFKDPSDFIRAMREMNGKYVGNRPIKLRKSTWKDRNIDVVRKKVKEKKKL 402
[Close]
BLAST of mRNA_P-wetherbeei_contig524.1.1 vs. uniprot
Match: A0A7R9U4X3_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U4X3_9STRA)

HSP 1 Score: 87.4 bits (215), Expect = 4.360e-20
Identity = 40/73 (54.79%), Postives = 58/73 (79.45%), Query Frame = 1 
Query:    1 QIIREQWNKKSKGYGFVSFLDGLEMMRALREMNGKYLGNRPMKISKSTWKDREIQEVRKKEKKKKKLAKALGM 219
            +I R++   K + +GFVSFLDG++ M+A+RE  GKY G RPMKI +STWKDR++QE++KK+K++KK  K LG+
Sbjct:   93 KICRDRARNKVRQFGFVSFLDGMDCMKAMREQQGKYCGQRPMKIRRSTWKDRDVQELKKKDKRRKKFEKKLGL 165
[Close]
BLAST of mRNA_P-wetherbeei_contig524.1.1 vs. uniprot
Match: V4B0Y0_LOTGI (RNA-binding protein 42 n=1 Tax=Lottia gigantea TaxID=225164 RepID=V4B0Y0_LOTGI)

HSP 1 Score: 86.3 bits (212), Expect = 6.320e-20
Identity = 42/67 (62.69%), Postives = 56/67 (83.58%), Query Frame = 1 
Query:    1 QIIREQWNKKSKGYGFVSFLDGLEMMRALREMNGKYLGNRPMKISKSTWKDREIQEVRKKEKKKKKL 201
            +I+R++ + KSKGYGFVSF D  +  RA+R+MNGKY+GNRP+K+ KSTW+DR I  VRKKEK+KK+L
Sbjct:   70 KIVRDRRSNKSKGYGFVSFKDPGDFTRAMRDMNGKYVGNRPIKLRKSTWRDRNIDIVRKKEKEKKRL 136
[Close]
BLAST of mRNA_P-wetherbeei_contig524.1.1 vs. uniprot
Match: A0A4D9D1U7_9STRA (RRM domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D1U7_9STRA)

HSP 1 Score: 90.5 bits (223), Expect = 6.520e-20
Identity = 43/73 (58.90%), Postives = 60/73 (82.19%), Query Frame = 1 
Query:    1 QIIREQWNKKSKGYGFVSFLDGLEMMRALREMNGKYLGNRPMKISKSTWKDREIQEVRKKEKKKKKLAKALGM 219
            +++R++   KS+GYGFVSFLD LE ++ALREMNGKY+G+RP+K+ K  WK+R+++EVRKKEK KKK    LG+
Sbjct:  275 KVLRDRGTGKSRGYGFVSFLDPLEGLKALREMNGKYVGSRPVKLRKCDWKERDLKEVRKKEKTKKKFLSKLGL 347
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig524.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CHC6_9STRA1.290e-2571.23RRM domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A6H5KAJ6_9PHAE2.020e-2568.49RRM domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LJT5_ECTSI1.690e-2377.19Temporarily Assigned Gene name family member (Tag-... [more]
A0A7S3JN71_9STRA2.560e-2261.64Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A7S1XX46_9STRA8.140e-2261.64Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A482SES9_9ARCH9.740e-2262.50RRM domain-containing protein n=1 Tax=archaeon Tax... [more]
A0A6F9DR14_9ASCI2.880e-2067.16RNA-binding protein 42 n=1 Tax=Phallusia mammillat... [more]
A0A7R9U4X3_9STRA4.360e-2054.79Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
V4B0Y0_LOTGI6.320e-2062.69RNA-binding protein 42 n=1 Tax=Lottia gigantea Tax... [more]
A0A4D9D1U7_9STRA6.520e-2058.90RRM domain-containing protein n=2 Tax=Monodopsidac... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig524contigP-wetherbeei_contig524:206..634 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D8LJT5
Preferred nameRBM42
PFAMsRRM_1
Model size225
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
GOsGO:0000075,GO:0000077,GO:0000278,GO:0000375,GO:0000377,GO:0000398,GO:0001654,GO:0002088,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003730,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0006139,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006977,GO:0006978,GO:0007049,GO:0007050,GO:0007093,GO:0007154,GO:0007165,GO:0007275,GO:0007346,GO:0007423,GO:0008150,GO:0008152,GO:0008285,GO:0008380,GO:0009892,GO:0009893,GO:0009894,GO:0009895,GO:0009987,GO:0010467,GO:0010468,GO:0010564,GO:0010604,GO:0010605,GO:0010608,GO:0010628,GO:0010629,GO:0010948,GO:0016070,GO:0016071,GO:0019219,GO:0019222,GO:0022402,GO:0023052,GO:0030330,GO:0031323,GO:0031324,GO:0031329,GO:0031330,GO:0031570,GO:0031571,GO:0032501,GO:0032502,GO:0033119,GO:0033554,GO:0034641,GO:0035556,GO:0042127,GO:0042770,GO:0042772,GO:0043010,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043484,GO:0043487,GO:0043488,GO:0043489,GO:0044237,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0044773,GO:0044774,GO:0044783,GO:0044819,GO:0045786,GO:0045787,GO:0045930,GO:0045934,GO:0046483,GO:0048024,GO:0048025,GO:0048255,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048731,GO:0048856,GO:0050684,GO:0050686,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0051716,GO:0051726,GO:0060255,GO:0061013,GO:0065007,GO:0065008,GO:0070935,GO:0071156,GO:0071158,GO:0071704,GO:0072331,GO:0072395,GO:0072401,GO:0072413,GO:0072422,GO:0072431,GO:0080090,GO:0090068,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1901987,GO:1901988,GO:1901990,GO:1901991,GO:1902369,GO:1902373,GO:1902400,GO:1902402,GO:1902403,GO:1902806,GO:1902807,GO:1903047,GO:1903311,GO:1903312,GO:2000045,GO:2000134
Exons2
Evalue2.77e-24
EggNOG OGsKOG0226@1|root,KOG0226@2759|Eukaryota
DescriptionRNA binding
Cds size225
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186784.9508772-CDS-P-wetherbeei_contig524:205..3701683186784.9508772-CDS-P-wetherbeei_contig524:205..370Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig524 206..370 +
1683186784.964161-CDS-P-wetherbeei_contig524:574..6341683186784.964161-CDS-P-wetherbeei_contig524:574..634Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig524 575..634 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig524.1.1prot_P-wetherbeei_contig524.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig524 206..634 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig524.1.1

>prot_P-wetherbeei_contig524.1.1 ID=prot_P-wetherbeei_contig524.1.1|Name=mRNA_P-wetherbeei_contig524.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=75bp
QIIREQWNKKSKGYGFVSFLDGLEMMRALREMNGKYLGNRPMKISKSTWK
DREIQEVRKKEKKKKKLAKALGMA*
back to top

mRNA from alignment at P-wetherbeei_contig524:206..634+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig524.1.1 ID=mRNA_P-wetherbeei_contig524.1.1|Name=mRNA_P-wetherbeei_contig524.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=429bp|location=Sequence derived from alignment at P-wetherbeei_contig524:206..634+ (Phaeothamnion wetherbeei SAG_119_79)
CAGATCATCCGGGAGCAGTGGAACAAGAAGAGCAAGGGCTACGGCTTCGT
GAGCTTTCTCGACGGCCTTGAGATGATGCGGGCGCTGCGGGAGATGAACG
GCAAGTACCTGGGGAACCGCCCCATGAAAATCAGCAAGAGTACGTGGAAG
GACCGCGAGATCCAGGTACGAATGCAACACTAGCCCGAGATTTATGTATC
TTTTCCGTGCATCGGCCGCCCCACTAGCGACTTTCGCTTGGATATATTTG
CCGCGTTCTGCTCGCTTCTATTTCTTGAATCGATGGGCGTGCTGTTGAAC
GGCTTTGGCATCTTGCAGAAAGTTCTCACTGTCTTCCGATTCTTTCAATT
TCCCCTGTCCCTTTCCCAGGAGGTGCGCAAGAAGGAGAAGAAGAAGAAGA
AACTGGCGAAGGCGCTCGGGATGGCGTGA
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig524:206..634+

>mRNA_P-wetherbeei_contig524.1.1 ID=mRNA_P-wetherbeei_contig524.1.1|Name=mRNA_P-wetherbeei_contig524.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=225bp|location=Sequence derived from alignment at P-wetherbeei_contig524:206..634+ (Phaeothamnion wetherbeei SAG_119_79)
CAGATCATCCGGGAGCAGTGGAACAAGAAGAGCAAGGGCTACGGCTTCGT
GAGCTTTCTCGACGGCCTTGAGATGATGCGGGCGCTGCGGGAGATGAACG
GCAAGTACCTGGGGAACCGCCCCATGAAAATCAGCAAGAGTACGTGGAAG
GACCGCGAGATCCAGGAGGTGCGCAAGAAGGAGAAGAAGAAGAAGAAACT
GGCGAAGGCGCTCGGGATGGCGTGA
back to top