mRNA_P-wetherbeei_contig52386.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig52386.1.1
Unique NamemRNA_P-wetherbeei_contig52386.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig52386.1.1 vs. uniprot
Match: A0A1F4DG05_9PROT (Uncharacterized protein n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_62_13 TaxID=1797495 RepID=A0A1F4DG05_9PROT)

HSP 1 Score: 85.5 bits (210), Expect = 1.620e-20
Identity = 39/59 (66.10%), Postives = 45/59 (76.27%), Query Frame = 1
Query:    4 KLTVYGRTYCHLCDDMIAGLRTLQAGDRFELEVIDVDSDPLLEARYGELVPVLIGGDGE 180
            +LT+Y R+YCHLCD+MIAGLR LQA +RFE E+IDVD DP  E  YGE VPVL  G  E
Sbjct:    8 RLTLYSRSYCHLCDEMIAGLRELQAANRFEFEIIDVDRDPAFEQLYGEKVPVLAYGGRE 66          
BLAST of mRNA_P-wetherbeei_contig52386.1.1 vs. uniprot
Match: A0A1F3ZXF7_9PROT (Uncharacterized protein n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_02_64_14 TaxID=1797482 RepID=A0A1F3ZXF7_9PROT)

HSP 1 Score: 84.0 bits (206), Expect = 6.600e-20
Identity = 39/58 (67.24%), Postives = 42/58 (72.41%), Query Frame = 1
Query:    7 LTVYGRTYCHLCDDMIAGLRTLQAGDRFELEVIDVDSDPLLEARYGELVPVLIGGDGE 180
            LTV+   YCHLCDDMI GLR LQ    F   V+DVD DPLLEARYGE VPVL+GG  E
Sbjct:    9 LTVFAHPYCHLCDDMIEGLRRLQVTHPFAFAVVDVDDDPLLEARYGERVPVLVGGGRE 66          
BLAST of mRNA_P-wetherbeei_contig52386.1.1 vs. uniprot
Match: A0A518U6W1_9PROT (Thioredoxin family protein n=1 Tax=Denitratisoma sp. DHT3 TaxID=1981880 RepID=A0A518U6W1_9PROT)

HSP 1 Score: 82.4 bits (202), Expect = 2.620e-19
Identity = 38/58 (65.52%), Postives = 45/58 (77.59%), Query Frame = 1
Query:    7 LTVYGRTYCHLCDDMIAGLRTLQAGDRFELEVIDVDSDPLLEARYGELVPVLIGGDGE 180
            LT+YGRTYCHLCDDM+A L+ L+    FE+ V+DVD+DP LEARY E VPVL GG  E
Sbjct:    8 LTLYGRTYCHLCDDMLAALQPLRDQHPFEVRVVDVDADPALEARYDERVPVLEGGGRE 65          
BLAST of mRNA_P-wetherbeei_contig52386.1.1 vs. uniprot
Match: A0A191ZY05_9RALS (Glutaredoxin n=4 Tax=Ralstonia TaxID=48736 RepID=A0A191ZY05_9RALS)

HSP 1 Score: 82.0 bits (201), Expect = 4.480e-19
Identity = 37/57 (64.91%), Postives = 44/57 (77.19%), Query Frame = 1
Query:    1 IKLTVYGRTYCHLCDDMIAGLRTLQAGDRFELEVIDVDSDPLLEARYGELVPVLIGG 171
            I+LT+YGRTYCHLCDDM   L  L+    F+L  +DVDSDP LEAR+GELVPVL+ G
Sbjct:    2 IELTLYGRTYCHLCDDMKVALEPLRRDFSFQLHEVDVDSDPALEARFGELVPVLMAG 58          
BLAST of mRNA_P-wetherbeei_contig52386.1.1 vs. uniprot
Match: A0A431LTG8_9RHOO (Glutaredoxin family protein n=1 Tax=Rhodocyclaceae bacterium TaxID=1898103 RepID=A0A431LTG8_9RHOO)

HSP 1 Score: 81.6 bits (200), Expect = 5.570e-19
Identity = 36/59 (61.02%), Postives = 46/59 (77.97%), Query Frame = 1
Query:    4 KLTVYGRTYCHLCDDMIAGLRTLQAGDRFELEVIDVDSDPLLEARYGELVPVLIGGDGE 180
            +LT+Y RTYCHLCDDM+A L TL++   F + V+DVD+DP LEA+Y ELVPVL+  D E
Sbjct:   10 QLTLYSRTYCHLCDDMLAALETLRSEFSFTVAVVDVDADPALEAKYDELVPVLVAEDQE 68          
BLAST of mRNA_P-wetherbeei_contig52386.1.1 vs. uniprot
Match: A0A3N5X5V2_9PROT (Glutaredoxin family protein n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A3N5X5V2_9PROT)

HSP 1 Score: 80.9 bits (198), Expect = 1.090e-18
Identity = 35/60 (58.33%), Postives = 48/60 (80.00%), Query Frame = 1
Query:    1 IKLTVYGRTYCHLCDDMIAGLRTLQAGDRFELEVIDVDSDPLLEARYGELVPVLIGGDGE 180
            + LT+Y R +CHLC++M+AGL+ LQA   FELEV+D+D+ P LE R+GE+VPVL+ GD E
Sbjct:    7 LVLTLYSRAWCHLCEEMLAGLQELQARRPFELEVVDIDTRPALELRFGEIVPVLMHGDRE 66          
BLAST of mRNA_P-wetherbeei_contig52386.1.1 vs. uniprot
Match: UPI000664A04E (glutaredoxin family protein n=1 Tax=Ralstonia insidiosa TaxID=190721 RepID=UPI000664A04E)

HSP 1 Score: 80.9 bits (198), Expect = 1.280e-18
Identity = 37/57 (64.91%), Postives = 43/57 (75.44%), Query Frame = 1
Query:    1 IKLTVYGRTYCHLCDDMIAGLRTLQAGDRFELEVIDVDSDPLLEARYGELVPVLIGG 171
            I+LT+YGR+YCHLCDDM   L   Q G  F L  +DVDSDP LEAR+GELVPVL+ G
Sbjct:    2 IELTLYGRSYCHLCDDMKVALEPFQRGFSFVLHEVDVDSDPALEARFGELVPVLMTG 58          
BLAST of mRNA_P-wetherbeei_contig52386.1.1 vs. uniprot
Match: A0A3N5N8Q1_9PROT (Glutaredoxin family protein n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A3N5N8Q1_9PROT)

HSP 1 Score: 80.5 bits (197), Expect = 1.320e-18
Identity = 36/58 (62.07%), Postives = 45/58 (77.59%), Query Frame = 1
Query:    1 IKLTVYGRTYCHLCDDMIAGLRTLQAGDRFELEVIDVDSDPLLEARYGELVPVLIGGD 174
            ++LT+YGR YCHLC+DM+A L  + A   FE++V+DVD DP LEARYGE VPVL  GD
Sbjct:    1 MRLTLYGRGYCHLCEDMLAALEPIGARLGFEVDVVDVDRDPALEARYGERVPVLAHGD 58          
BLAST of mRNA_P-wetherbeei_contig52386.1.1 vs. uniprot
Match: A0A401K0G7_9RALS (Thioredoxin family protein n=1 Tax=Ralstonia sp. SET104 TaxID=2448774 RepID=A0A401K0G7_9RALS)

HSP 1 Score: 80.5 bits (197), Expect = 1.820e-18
Identity = 37/57 (64.91%), Postives = 44/57 (77.19%), Query Frame = 1
Query:    1 IKLTVYGRTYCHLCDDMIAGLRTLQAGDRFELEVIDVDSDPLLEARYGELVPVLIGG 171
            I+LT+YGRTYCHLCDDM + L  L+ G  F L  +DVDSDP LE R+GELVPVL+ G
Sbjct:    2 IELTLYGRTYCHLCDDMKSALEPLRRGFSFVLHEVDVDSDPALEDRFGELVPVLMTG 58          
BLAST of mRNA_P-wetherbeei_contig52386.1.1 vs. uniprot
Match: A0A353HWJ7_9BURK (Thioredoxin family protein n=2 Tax=Massilia sp. TaxID=1882437 RepID=A0A353HWJ7_9BURK)

HSP 1 Score: 79.7 bits (195), Expect = 3.210e-18
Identity = 36/57 (63.16%), Postives = 46/57 (80.70%), Query Frame = 1
Query:    1 IKLTVYGRTYCHLCDDMIAGLRTL-QAGDRFELEVIDVDSDPLLEARYGELVPVLIG 168
            ++ T+Y R++CHLC+DM+A LR L Q G  FE+EVIDVD+DP LEAR+ ELVPVL G
Sbjct:    1 MRFTLYSRSWCHLCEDMLAALRALEQPGQSFEIEVIDVDADPALEARFNELVPVLYG 57          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig52386.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1F4DG05_9PROT1.620e-2066.10Uncharacterized protein n=1 Tax=Betaproteobacteria... [more]
A0A1F3ZXF7_9PROT6.600e-2067.24Uncharacterized protein n=1 Tax=Betaproteobacteria... [more]
A0A518U6W1_9PROT2.620e-1965.52Thioredoxin family protein n=1 Tax=Denitratisoma s... [more]
A0A191ZY05_9RALS4.480e-1964.91Glutaredoxin n=4 Tax=Ralstonia TaxID=48736 RepID=A... [more]
A0A431LTG8_9RHOO5.570e-1961.02Glutaredoxin family protein n=1 Tax=Rhodocyclaceae... [more]
A0A3N5X5V2_9PROT1.090e-1858.33Glutaredoxin family protein n=1 Tax=Betaproteobact... [more]
UPI000664A04E1.280e-1864.91glutaredoxin family protein n=1 Tax=Ralstonia insi... [more]
A0A3N5N8Q1_9PROT1.320e-1862.07Glutaredoxin family protein n=1 Tax=Betaproteobact... [more]
A0A401K0G7_9RALS1.820e-1864.91Thioredoxin family protein n=1 Tax=Ralstonia sp. S... [more]
A0A353HWJ7_9BURK3.210e-1863.16Thioredoxin family protein n=2 Tax=Massilia sp. Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig52386contigP-wetherbeei_contig52386:3..182 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog1235457.C404_15165
PFAMsDUF836
Model size180
Max annot lvl28216|Betaproteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue7.35e-20
EggNOG OGsCOG0695@1|root,COG0695@2|Bacteria,1N82H@1224|Proteobacteria,2VWG7@28216|Betaproteobacteria,1K9F5@119060|Burkholderiaceae
DescriptionPFAM glutaredoxin 2
Cds size180
COG categoryO
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186784.9186978-CDS-P-wetherbeei_contig52386:2..1821683186784.9186978-CDS-P-wetherbeei_contig52386:2..182Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig52386 3..182 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig52386.1.1prot_P-wetherbeei_contig52386.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig52386 3..182 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig52386.1.1

>prot_P-wetherbeei_contig52386.1.1 ID=prot_P-wetherbeei_contig52386.1.1|Name=mRNA_P-wetherbeei_contig52386.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=60bp
IKLTVYGRTYCHLCDDMIAGLRTLQAGDRFELEVIDVDSDPLLEARYGEL
VPVLIGGDGE
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mRNA from alignment at P-wetherbeei_contig52386:3..182-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig52386.1.1 ID=mRNA_P-wetherbeei_contig52386.1.1|Name=mRNA_P-wetherbeei_contig52386.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=180bp|location=Sequence derived from alignment at P-wetherbeei_contig52386:3..182- (Phaeothamnion wetherbeei SAG_119_79)
ATCAAGCTCACCGTTTACGGGCGGACGTACTGTCATCTTTGCGACGACAT GATCGCGGGCTTGCGCACGCTGCAGGCTGGCGATCGTTTTGAGCTGGAAG TCATCGACGTAGACAGCGATCCGCTGCTCGAAGCGCGGTATGGCGAGCTG GTGCCGGTGCTGATCGGCGGCGATGGCGAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig52386:3..182-

>mRNA_P-wetherbeei_contig52386.1.1 ID=mRNA_P-wetherbeei_contig52386.1.1|Name=mRNA_P-wetherbeei_contig52386.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=180bp|location=Sequence derived from alignment at P-wetherbeei_contig52386:3..182- (Phaeothamnion wetherbeei SAG_119_79)
ATCAAGCTCACCGTTTACGGGCGGACGTACTGTCATCTTTGCGACGACAT
GATCGCGGGCTTGCGCACGCTGCAGGCTGGCGATCGTTTTGAGCTGGAAG
TCATCGACGTAGACAGCGATCCGCTGCTCGAAGCGCGGTATGGCGAGCTG
GTGCCGGTGCTGATCGGCGGCGATGGCGAG
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