mRNA_P-wetherbeei_contig52326.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig52326.1.1
Unique NamemRNA_P-wetherbeei_contig52326.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig52326.1.1 vs. uniprot
Match: UPI001C6334E9 (MFS transporter n=1 Tax=Iamia sp. SCSIO 61187 TaxID=2722752 RepID=UPI001C6334E9)

HSP 1 Score: 92.4 bits (228), Expect = 1.990e-20
Identity = 44/64 (68.75%), Postives = 51/64 (79.69%), Query Frame = 1
Query:    1 FGWGMMPIGTALGGVIVAVMEHVTDRETALRSPWVVSAALGLLLMLYAVPRLTTERMDRARAEA 192
            FGWGMMPIGTALGG++V   E +  RE ALR+PW V+AA+GL L  YAVPRLT+ERMD ARA A
Sbjct:  379 FGWGMMPIGTALGGLVVVAGEPLWGREAALRAPWFVAAAVGLALCAYAVPRLTSERMDSARAAA 442          
BLAST of mRNA_P-wetherbeei_contig52326.1.1 vs. uniprot
Match: A0A7V9C7N5_9ACTN (MFS transporter n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A7V9C7N5_9ACTN)

HSP 1 Score: 84.3 bits (207), Expect = 7.320e-18
Identity = 40/66 (60.61%), Postives = 51/66 (77.27%), Query Frame = 1
Query:    1 FGWGMMPIGTALGGVIVAVMEHVTDRETALRSPWVVSAALGLLLMLYAVPRLTTERMDRARAEALA 198
            FGWGMMP+G A+GG +V + E V DR+ ALR PW+V+AA  L LM YAVPRLTT +++ ARAE +A
Sbjct:  219 FGWGMMPVGFAVGGALVWLGELVGDRQFALRLPWLVAAAAYLALMFYAVPRLTTAKVEAARAEGIA 284          
BLAST of mRNA_P-wetherbeei_contig52326.1.1 vs. uniprot
Match: A0A7Y1Y9W8_9ACTN (Uncharacterized protein n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A7Y1Y9W8_9ACTN)

HSP 1 Score: 79.0 bits (193), Expect = 1.410e-17
Identity = 36/66 (54.55%), Postives = 48/66 (72.73%), Query Frame = 1
Query:    1 FGWGMMPIGTALGGVIVAVMEHVTDRETALRSPWVVSAALGLLLMLYAVPRLTTERMDRARAEALA 198
            F WGMMPIG+A+GG +V   E   DRE +LR PW V+AA  +LL+LYA P+LTTE+++ AR   +A
Sbjct:    5 FAWGMMPIGSAIGGALVVGSELFFDRELSLRMPWFVAAAAYVLLLLYAAPKLTTEKIESARTAGVA 70          
BLAST of mRNA_P-wetherbeei_contig52326.1.1 vs. uniprot
Match: A0A7W1LSE4_9ACTN (MFS transporter n=2 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A7W1LSE4_9ACTN)

HSP 1 Score: 83.6 bits (205), Expect = 3.080e-17
Identity = 39/67 (58.21%), Postives = 49/67 (73.13%), Query Frame = 1
Query:    1 FGWGMMPIGTALGGVIVAVMEHVTDRETALRSPWVVSAALGLLLMLYAVPRLTTERMDRARAEALAR 201
            FGWGM+PIG  +GG++VAV +    RETALR PW V+A    LL++YA PRLT+  +D ARAEA AR
Sbjct:  364 FGWGMIPIGALIGGLVVAVTDGAASRETALRMPWFVAAGGLALLLVYAAPRLTSRAIDEARAEAAAR 430          
BLAST of mRNA_P-wetherbeei_contig52326.1.1 vs. uniprot
Match: A0A7Y2IUS1_9ACTN (MFS transporter n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A7Y2IUS1_9ACTN)

HSP 1 Score: 83.6 bits (205), Expect = 3.160e-17
Identity = 39/65 (60.00%), Postives = 48/65 (73.85%), Query Frame = 1
Query:    1 FGWGMMPIGTALGGVIVAVMEHVTDRETALRSPWVVSAALGLLLMLYAVPRLTTERMDRARAEAL 195
            FGWGMMPIG+ALGG+++ + E + DR   LR P+ V A   LLL LYA PRLTTE+M+ ARAE L
Sbjct:  399 FGWGMMPIGSALGGLVMVIGESIVDRPFGLRLPYFVVAGAQLLLFLYAAPRLTTEKMEAARAEGL 463          
BLAST of mRNA_P-wetherbeei_contig52326.1.1 vs. uniprot
Match: A0A7Y1TSG6_9ACTN (MFS transporter n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A7Y1TSG6_9ACTN)

HSP 1 Score: 82.4 bits (202), Expect = 8.210e-17
Identity = 39/66 (59.09%), Postives = 49/66 (74.24%), Query Frame = 1
Query:    1 FGWGMMPIGTALGGVIVAVMEHVTDRETALRSPWVVSAALGLLLMLYAVPRLTTERMDRARAEALA 198
            FGWGMMPIG+ALGG+++ V E + DR   LR P+ V A   LLL LYA PRLTT++M+ ARAE +A
Sbjct:  404 FGWGMMPIGSALGGLVMVVGEAIWDRPIGLRLPYFVVAVSQLLLFLYAAPRLTTQKMEAARAEGIA 469          
BLAST of mRNA_P-wetherbeei_contig52326.1.1 vs. uniprot
Match: A0A7Y2IJY6_9ACTN (MFS transporter n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A7Y2IJY6_9ACTN)

HSP 1 Score: 80.5 bits (197), Expect = 4.060e-16
Identity = 38/67 (56.72%), Postives = 49/67 (73.13%), Query Frame = 1
Query:    1 FGWGMMPIGTALGGVIVAVMEHVTDRETALRSPWVVSAALGLLLMLYAVPRLTTERMDRARAEALAR 201
            FGWGM+PIG+A+GG IVA+   +  R  ALR P+ +     +LL+ YA+PRLTTERMD ARAE +AR
Sbjct:  406 FGWGMIPIGSAIGGGIVALATPIVGRSMALRWPYFIVVVAYILLLFYALPRLTTERMDAARAEGVAR 472          
BLAST of mRNA_P-wetherbeei_contig52326.1.1 vs. uniprot
Match: UPI000E340F0C (MFS transporter n=1 Tax=Desertimonas flava TaxID=2064846 RepID=UPI000E340F0C)

HSP 1 Score: 79.3 bits (194), Expect = 1.010e-15
Identity = 39/66 (59.09%), Postives = 51/66 (77.27%), Query Frame = 1
Query:    1 FGWGMMPIGTALGGVIVAVMEHVTDRETALRSPWVVSAALGLLLML--YAVPRLTTERMDRARAEA 192
            F WGM+PIGTA+GG+IV + E +T RETALR PW ++   G L++L  YA+PRLTT  ++RARAEA
Sbjct:  395 FAWGMIPIGTAVGGLIVVLTERLTSRETALRMPWWIAGG-GYLVLLGAYALPRLTTANIERARAEA 459          
BLAST of mRNA_P-wetherbeei_contig52326.1.1 vs. uniprot
Match: A0A0R2PFC1_9ACTN (MFS transporter n=1 Tax=Actinobacteria bacterium BACL15 MAG-120619-bin91 TaxID=1655562 RepID=A0A0R2PFC1_9ACTN)

HSP 1 Score: 78.6 bits (192), Expect = 1.800e-15
Identity = 33/66 (50.00%), Postives = 50/66 (75.76%), Query Frame = 1
Query:    1 FGWGMMPIGTALGGVIVAVMEHVTDRETALRSPWVVSAALGLLLMLYAVPRLTTERMDRARAEALA 198
            F WG +PIG   GG +V ++E +T RE ALR+P+++ A LGLL+ ++A PRLTT  +++ARAEA++
Sbjct:  370 FAWGSIPIGMFAGGAVVTLLESMTSREVALRAPYLLGAVLGLLIFIFAAPRLTTAALNKARAEAIS 435          
BLAST of mRNA_P-wetherbeei_contig52326.1.1 vs. uniprot
Match: A0A6I3HDI4_9ACTN (MFS transporter n=4 Tax=root TaxID=1 RepID=A0A6I3HDI4_9ACTN)

HSP 1 Score: 77.8 bits (190), Expect = 3.370e-15
Identity = 37/63 (58.73%), Postives = 45/63 (71.43%), Query Frame = 1
Query:    1 FGWGMMPIGTALGGVIVAVMEHVTDRETALRSPWVVSAALGLLLMLYAVPRLTTERMDRARAE 189
            F WG +PIG  LGG +VAVM H   RE+ALRSP+ VSA LGLLL   A PRLTT +++ AR +
Sbjct:  371 FAWGSIPIGMGLGGGLVAVMTHFVSRESALRSPYFVSAVLGLLLWAIAAPRLTTAKIEAARTQ 433          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig52326.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI001C6334E91.990e-2068.75MFS transporter n=1 Tax=Iamia sp. SCSIO 61187 TaxI... [more]
A0A7V9C7N5_9ACTN7.320e-1860.61MFS transporter n=1 Tax=Acidimicrobiia bacterium T... [more]
A0A7Y1Y9W8_9ACTN1.410e-1754.55Uncharacterized protein n=1 Tax=Acidimicrobiia bac... [more]
A0A7W1LSE4_9ACTN3.080e-1758.21MFS transporter n=2 Tax=Acidimicrobiia bacterium T... [more]
A0A7Y2IUS1_9ACTN3.160e-1760.00MFS transporter n=1 Tax=Acidimicrobiia bacterium T... [more]
A0A7Y1TSG6_9ACTN8.210e-1759.09MFS transporter n=1 Tax=Acidimicrobiia bacterium T... [more]
A0A7Y2IJY6_9ACTN4.060e-1656.72MFS transporter n=1 Tax=Acidimicrobiia bacterium T... [more]
UPI000E340F0C1.010e-1559.09MFS transporter n=1 Tax=Desertimonas flava TaxID=2... [more]
A0A0R2PFC1_9ACTN1.800e-1550.00MFS transporter n=1 Tax=Actinobacteria bacterium B... [more]
A0A6I3HDI4_9ACTN3.370e-1558.73MFS transporter n=4 Tax=root TaxID=1 RepID=A0A6I3H... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig52326contigP-wetherbeei_contig52326:2..205 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1123065.ATWL01000003_gene659
PFAMsMFS_3
Model size204
Max annot lvl201174|Actinobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.8e-07
EggNOG OGsCOG2270@1|root,COG2270@2|Bacteria,2I6N9@201174|Actinobacteria
DescriptionTransmembrane secretion effector
Cds size192
COG categoryS
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186784.3477697-UTR-P-wetherbeei_contig52326:1..131683186784.3477697-UTR-P-wetherbeei_contig52326:1..13Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig52326 2..13 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186784.3583333-CDS-P-wetherbeei_contig52326:13..2051683186784.3583333-CDS-P-wetherbeei_contig52326:13..205Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig52326 14..205 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig52326.1.1prot_P-wetherbeei_contig52326.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig52326 14..205 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig52326.1.1

>prot_P-wetherbeei_contig52326.1.1 ID=prot_P-wetherbeei_contig52326.1.1|Name=mRNA_P-wetherbeei_contig52326.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=64bp
MMPIGTALGGVIVAVMEHVTDRETALRSPWVVSAALGLLLMLYAVPRLTT
ERMDRARAEALAR*
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mRNA from alignment at P-wetherbeei_contig52326:2..205+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig52326.1.1 ID=mRNA_P-wetherbeei_contig52326.1.1|Name=mRNA_P-wetherbeei_contig52326.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=204bp|location=Sequence derived from alignment at P-wetherbeei_contig52326:2..205+ (Phaeothamnion wetherbeei SAG_119_79)
TTCGGCTGGGGGATGATGCCGATCGGCACCGCACTTGGCGGCGTGATCGT GGCCGTGATGGAGCACGTCACCGACCGCGAGACCGCACTGCGTTCACCGT GGGTGGTCTCGGCCGCCCTCGGACTGCTGCTGATGCTGTACGCCGTGCCT CGCCTGACCACCGAGCGCATGGACCGGGCGAGAGCCGAAGCCCTGGCCCG CTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig52326:2..205+

>mRNA_P-wetherbeei_contig52326.1.1 ID=mRNA_P-wetherbeei_contig52326.1.1|Name=mRNA_P-wetherbeei_contig52326.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=192bp|location=Sequence derived from alignment at P-wetherbeei_contig52326:2..205+ (Phaeothamnion wetherbeei SAG_119_79)
ATGATGCCGATCGGCACCGCACTTGGCGGCGTGATCGTGGCCGTGATGGA
GCACGTCACCGACCGCGAGACCGCACTGCGTTCACCGTGGGTGGTCTCGG
CCGCCCTCGGACTGCTGCTGATGCTGTACGCCGTGCCTCGCCTGACCACC
GAGCGCATGGACCGGGCGAGAGCCGAAGCCCTGGCCCGCTGA
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