mRNA_P-wetherbeei_contig5232.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5232.1.1
Unique NamemRNA_P-wetherbeei_contig5232.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5232.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5232contigP-wetherbeei_contig5232:74..304 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog35720.XP_003652913.1
PFAMsAAA_16,Ank_2,Ank_4,NACHT,SPRY
Model size231
Max annot lvl4751|Fungi
Hectar predicted targeting categoryother localisation
Exons1
Evalue9.89e-06
EggNOG OGsCOG0666@1|root,KOG1477@1|root,KOG1477@2759|Eukaryota,KOG4177@2759|Eukaryota,39YJF@33154|Opisthokonta,3NU6I@4751|Fungi,3QN90@4890|Ascomycota,21JCR@147550|Sordariomycetes,3UB0X@5139|Sordariales,3HFXN@35718|Chaetomiaceae
DescriptionAnkyrin repeat
Cds size231
COG categoryM
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186784.2842317-CDS-P-wetherbeei_contig5232:73..3041683186784.2842317-CDS-P-wetherbeei_contig5232:73..304Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5232 74..304 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5232.1.1prot_P-wetherbeei_contig5232.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5232 74..304 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5232.1.1

>prot_P-wetherbeei_contig5232.1.1 ID=prot_P-wetherbeei_contig5232.1.1|Name=mRNA_P-wetherbeei_contig5232.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=77bp
GGGDEVPRNLPLREGDVIGCGVSASDGRVFFTRNGALLPASAVASSLPRL
RPMVVVSGHCETVEANFGPFFAYRGDE
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mRNA from alignment at P-wetherbeei_contig5232:74..304+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5232.1.1 ID=mRNA_P-wetherbeei_contig5232.1.1|Name=mRNA_P-wetherbeei_contig5232.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=231bp|location=Sequence derived from alignment at P-wetherbeei_contig5232:74..304+ (Phaeothamnion wetherbeei SAG_119_79)
GGCGGCGGTGATGAGGTGCCTCGCAACCTCCCCCTCCGGGAGGGAGACGT
CATCGGCTGCGGCGTCTCCGCTTCGGACGGGCGCGTGTTCTTCACGCGGA
ACGGCGCCCTGCTGCCCGCGTCAGCGGTGGCGTCGTCGCTGCCCCGCCTG
CGGCCGATGGTGGTGGTGTCGGGCCACTGCGAAACGGTCGAAGCCAACTT
CGGGCCCTTCTTTGCCTACCGCGGCGATGAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5232:74..304+

>mRNA_P-wetherbeei_contig5232.1.1 ID=mRNA_P-wetherbeei_contig5232.1.1|Name=mRNA_P-wetherbeei_contig5232.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=231bp|location=Sequence derived from alignment at P-wetherbeei_contig5232:74..304+ (Phaeothamnion wetherbeei SAG_119_79)
GGCGGCGGTGATGAGGTGCCTCGCAACCTCCCCCTCCGGGAGGGAGACGT
CATCGGCTGCGGCGTCTCCGCTTCGGACGGGCGCGTGTTCTTCACGCGGA
ACGGCGCCCTGCTGCCCGCGTCAGCGGTGGCGTCGTCGCTGCCCCGCCTG
CGGCCGATGGTGGTGGTGTCGGGCCACTGCGAAACGGTCGAAGCCAACTT
CGGGCCCTTCTTTGCCTACCGCGGCGATGAG
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