mRNA_P-wetherbeei_contig52315.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig52315.1.1
Unique NamemRNA_P-wetherbeei_contig52315.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig52315.1.1 vs. uniprot
Match: A0A7S2DZB6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DZB6_9STRA)

HSP 1 Score: 64.7 bits (156), Expect = 1.500e-10
Identity = 38/71 (53.52%), Postives = 50/71 (70.42%), Query Frame = 1 
Query:    1 CENPGQSAVYCLCVAMVLITYMQICLPCILGVLMVPVLCXXXXXXIRLLNSIADHDRQKGAPRAVIERLQL 213
            C  P QS +Y LC+AMV+  Y+ ICLPCI+ +LM+PVLC XXXXXI +L  + D +  KGA  A I++L L
Sbjct:  192 CVRPTQSPIYNLCLAMVVFNYIHICLPCIVAILMIPVLCFXXXXXIHMLRWMRDPEEGKGASEAAIKKLPL 262
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BLAST of mRNA_P-wetherbeei_contig52315.1.1 vs. uniprot
Match: W7TC48_9STRA (E3 ubiquitin-protein ligase n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TC48_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 2.650e-10
Identity = 37/71 (52.11%), Postives = 50/71 (70.42%), Query Frame = 1 
Query:    1 CENPGQSAVYCLCVAMVLITYMQICLPCILGVLMVPVLCXXXXXXIRLLNSIADHDRQKGAPRAVIERLQL 213
            C +P +S VY LCVA V I Y Q+CLPC++ ++M+PVLC XXXX IR+L  I D  R KGA  ++I +L +
Sbjct:   58 CPHPNRSPVYSLCVAFVFINYAQLCLPCVVVIIMLPVLCFXXXXLIRILARIQDPMRGKGATPSMINKLPM 128
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BLAST of mRNA_P-wetherbeei_contig52315.1.1 vs. uniprot
Match: K8YR69_NANGC (Uncharacterized protein n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8YR69_NANGC)

HSP 1 Score: 63.9 bits (154), Expect = 3.070e-10
Identity = 37/71 (52.11%), Postives = 50/71 (70.42%), Query Frame = 1 
Query:    1 CENPGQSAVYCLCVAMVLITYMQICLPCILGVLMVPVLCXXXXXXIRLLNSIADHDRQKGAPRAVIERLQL 213
            C +P +S VY LCVA V I Y Q+CLPC++ ++M+PVLC XXXX IR+L  I D  R KGA  ++I +L +
Sbjct:  134 CPHPNRSPVYSLCVAFVFINYAQLCLPCVVVIIMLPVLCFXXXXLIRILARIQDPMRGKGATPSMINKLPM 204
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BLAST of mRNA_P-wetherbeei_contig52315.1.1 vs. uniprot
Match: W7TVD9_9STRA (E3 ubiquitin-protein ligase n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TVD9_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 3.090e-10
Identity = 37/71 (52.11%), Postives = 50/71 (70.42%), Query Frame = 1 
Query:    1 CENPGQSAVYCLCVAMVLITYMQICLPCILGVLMVPVLCXXXXXXIRLLNSIADHDRQKGAPRAVIERLQL 213
            C +P +S VY LCVA V I Y Q+CLPC++ ++M+PVLC XXXX IR+L  I D  R KGA  ++I +L +
Sbjct:   58 CPHPNRSPVYSLCVAFVFINYAQLCLPCVVVIIMLPVLCFXXXXLIRILARIQDPMRGKGATPSMINKLPM 128
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BLAST of mRNA_P-wetherbeei_contig52315.1.1 vs. uniprot
Match: A0A4D9DBP5_9STRA (RING-type domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DBP5_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 3.120e-10
Identity = 37/71 (52.11%), Postives = 50/71 (70.42%), Query Frame = 1 
Query:    1 CENPGQSAVYCLCVAMVLITYMQICLPCILGVLMVPVLCXXXXXXIRLLNSIADHDRQKGAPRAVIERLQL 213
            C +P +S VY LCVA V I Y Q+CLPC++ ++M+PVLC XXXX IR+L  I D  R KGA  ++I +L +
Sbjct:  173 CPHPNRSPVYSLCVAFVFINYAQLCLPCVVVIIMLPVLCFXXXXLIRILARIQDPMRGKGATPSMINKLPM 243
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BLAST of mRNA_P-wetherbeei_contig52315.1.1 vs. uniprot
Match: A0A835Z0W6_9STRA (RING-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0W6_9STRA)

HSP 1 Score: 58.5 bits (140), Expect = 2.040e-8
Identity = 35/71 (49.30%), Postives = 51/71 (71.83%), Query Frame = 1 
Query:    1 CENPGQSAVYCLCVAMVLITYMQICLPCILGVLMVPVLCXXXXXXIRLLNSIADHDRQKGAPRAVIERLQL 213
            C++   SA+Y LC+ ++++ Y+QICLPC+L VLMVPVLCXXXXXX R+L+   D    +GA +  I+ L +
Sbjct:  102 CQDASSSAIYQLCLVLIVVLYVQICLPCLLAVLMVPVLCXXXXXXXRVLSYFHDPMAGRGASQCAIDALPI 172
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BLAST of mRNA_P-wetherbeei_contig52315.1.1 vs. uniprot
Match: A0A7S2V5V5_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V5V5_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 4.500e-8
Identity = 37/70 (52.86%), Postives = 49/70 (70.00%), Query Frame = 1 
Query:    1 CENPGQSAVYCLCVAMVLITYMQICLPCILGVLMVPVLCXXXXXXIRLLNSIADHDRQKGAPRAVIERLQ 210
            C+NPG S +Y LCVAM+LITY+ ICLPC++         XXXXXX R+L+ + D  R KGA +A I+RL+
Sbjct:  203 CDNPGSSPIYQLCVAMLLITYIHICLPCLIXXXXXXXXXXXXXXXXRVLSRLQDPMRGKGANQAAIDRLE 272
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BLAST of mRNA_P-wetherbeei_contig52315.1.1 vs. uniprot
Match: A0A6H5JPD9_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPD9_9PHAE)

HSP 1 Score: 57.4 bits (137), Expect = 6.350e-8
Identity = 37/69 (53.62%), Postives = 49/69 (71.01%), Query Frame = 1 
Query:    1 CENPGQSAVYCLCVAMVLITYMQICLPCILGVLMVPVLCXXXXXXIRLLNSIADHDRQKGAPRAVIERL 207
            C+NP  S +Y LC+  ++ITY+ ICLPCIL +L+VPV  XXXXXXIRL+  +    R KGA +  IE+L
Sbjct:  279 CDNPRDSPIYQLCLVYIIITYIHICLPCILLMLLVPVXXXXXXXXIRLMGMLQGPQRLKGARQDEIEKL 347
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BLAST of mRNA_P-wetherbeei_contig52315.1.1 vs. uniprot
Match: A0A6S8S1Z2_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A6S8S1Z2_9STRA)

HSP 1 Score: 56.2 bits (134), Expect = 1.500e-7
Identity = 31/69 (44.93%), Postives = 42/69 (60.87%), Query Frame = 1 
Query:    1 CENPGQSAVYCLCVAMVLITYMQICLPCILGVLMVPVLCXXXXXXIRLLNSIADHDRQKGAPRAVIERL 207
            C + G+S VY   VAM++I Y QICLPC+  V MVPV C      IRLL ++ D    +GA R  +++L
Sbjct:  168 CHDAGRSPVYVTDVAMLVIQYAQICLPCLFAVAMVPVFCFCLPCVIRLLAALHDPQHGRGATRRDLDKL 236
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BLAST of mRNA_P-wetherbeei_contig52315.1.1 vs. uniprot
Match: A0A7S2F7Z0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2F7Z0_9STRA)

HSP 1 Score: 56.2 bits (134), Expect = 1.620e-7
Identity = 33/74 (44.59%), Postives = 44/74 (59.46%), Query Frame = 1 
Query:    4 ENPG----QSAVYCLCVAMVLITYMQICLPCILGVLMVPVLCXXXXXXIRLLNSIADHDRQKGAPRAVIERLQL 213
             NP     +S VY LC AM+   Y QICLPCI+ V++VPV C      +RL+ +I D  + KGA  + IE+L L
Sbjct:  237 SNPNASCPRSTVYWLCCAMIAAQYAQICLPCIMAVMLVPVFCFCLPCFVRLVATIHDPMQGKGADMSAIEQLPL 310
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig52315.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
A0A7S2DZB6_9STRA1.500e-1053.52Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
W7TC48_9STRA2.650e-1052.11E3 ubiquitin-protein ligase n=1 Tax=Nannochloropsi... [more]
K8YR69_NANGC3.070e-1052.11Uncharacterized protein n=1 Tax=Nannochloropsis ga... [more]
W7TVD9_9STRA3.090e-1052.11E3 ubiquitin-protein ligase n=1 Tax=Nannochloropsi... [more]
A0A4D9DBP5_9STRA3.120e-1052.11RING-type domain-containing protein n=1 Tax=Nannoc... [more]
A0A835Z0W6_9STRA2.040e-849.30RING-type domain-containing protein n=1 Tax=Tribon... [more]
A0A7S2V5V5_9STRA4.500e-852.86Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A6H5JPD9_9PHAE6.350e-853.62RING-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6S8S1Z2_9STRA1.500e-744.93Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S2F7Z0_9STRA1.620e-744.59Hypothetical protein (Fragment) n=1 Tax=Florenciel... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig52315contigP-wetherbeei_contig52315:108..320 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog44056.XP_009034871.1
PFAMszf-RING_2
Model size213
Max annot lvl2759|Eukaryota
KEGG koko:K13148,ko:K19041
Hectar predicted targeting categorysignal anchor
GOsGO:0000003,GO:0003006,GO:0003674,GO:0003824,GO:0004842,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005774,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0007275,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009790,GO:0009791,GO:0009793,GO:0009987,GO:0010154,GO:0010498,GO:0016020,GO:0016567,GO:0016740,GO:0019538,GO:0019787,GO:0019941,GO:0022414,GO:0030163,GO:0031090,GO:0032182,GO:0032183,GO:0032184,GO:0032446,GO:0032501,GO:0032502,GO:0036211,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0048316,GO:0048608,GO:0048731,GO:0048856,GO:0051603,GO:0061458,GO:0061630,GO:0061659,GO:0070647,GO:0071704,GO:0098588,GO:0098805,GO:0140096,GO:1901564,GO:1901565,GO:1901575
Exons1
Evalue1.54e-06
EggNOG OGsKOG0800@1|root,KOG0800@2759|Eukaryota
EC2.3.2.27
Descriptionubiquitin-protein transferase activity
Cds size213
COG categoryO
BRITEko00000,ko01000,ko03041,ko04121
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186784.2469966-CDS-P-wetherbeei_contig52315:107..3201683186784.2469966-CDS-P-wetherbeei_contig52315:107..320Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig52315 108..320 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig52315.1.1prot_P-wetherbeei_contig52315.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig52315 108..320 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig52315.1.1

>prot_P-wetherbeei_contig52315.1.1 ID=prot_P-wetherbeei_contig52315.1.1|Name=mRNA_P-wetherbeei_contig52315.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=71bp
CENPGQSAVYCLCVAMVLITYMQICLPCILGVLMVPVLCFCLPCVIRLLN
SIADHDRQKGAPRAVIERLQL
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mRNA from alignment at P-wetherbeei_contig52315:108..320-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig52315.1.1 ID=mRNA_P-wetherbeei_contig52315.1.1|Name=mRNA_P-wetherbeei_contig52315.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=213bp|location=Sequence derived from alignment at P-wetherbeei_contig52315:108..320- (Phaeothamnion wetherbeei SAG_119_79)
TGTGAGAACCCGGGCCAGTCGGCGGTGTACTGCCTCTGCGTGGCGATGGT
ACTCATCACCTATATGCAGATCTGCCTGCCGTGCATCTTGGGTGTGCTCA
TGGTGCCGGTGCTGTGCTTCTGCCTGCCATGCGTCATCCGCCTCCTCAAC
TCCATCGCCGACCACGACCGCCAGAAGGGCGCGCCGCGGGCCGTCATCGA
GCGGCTGCAGCTC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig52315:108..320-

>mRNA_P-wetherbeei_contig52315.1.1 ID=mRNA_P-wetherbeei_contig52315.1.1|Name=mRNA_P-wetherbeei_contig52315.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=213bp|location=Sequence derived from alignment at P-wetherbeei_contig52315:108..320- (Phaeothamnion wetherbeei SAG_119_79)
TGTGAGAACCCGGGCCAGTCGGCGGTGTACTGCCTCTGCGTGGCGATGGT
ACTCATCACCTATATGCAGATCTGCCTGCCGTGCATCTTGGGTGTGCTCA
TGGTGCCGGTGCTGTGCTTCTGCCTGCCATGCGTCATCCGCCTCCTCAAC
TCCATCGCCGACCACGACCGCCAGAAGGGCGCGCCGCGGGCCGTCATCGA
GCGGCTGCAGCTC
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