mRNA_P-wetherbeei_contig5229.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5229.1.1
Unique NamemRNA_P-wetherbeei_contig5229.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig5229.1.1 vs. uniprot
Match: D7FKW1_ECTSI (Soluble NSF Attachment Protein (SNAP) Receptor (SNARE) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKW1_ECTSI)

HSP 1 Score: 90.9 bits (224), Expect = 1.090e-20
Identity = 45/67 (67.16%), Postives = 57/67 (85.07%), Query Frame = 1 
Query:   19 VRQQLARQDQDLEELGQHIDRVGEIGQVIHEELKDQHRMLSALDEDLEDAAEKMNFVMGHLAKLLKT 219
            VR QLARQD+DLEELG H++RVGE   VI+EEL+ Q+R+L+ALD+D+++A E MNFVMG L KLLKT
Sbjct:  159 VRMQLARQDEDLEELGTHVERVGETATVINEELRSQNRLLTALDDDMDEATESMNFVMGRLGKLLKT 225
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BLAST of mRNA_P-wetherbeei_contig5229.1.1 vs. uniprot
Match: A0A7S2S2P5_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S2P5_9STRA)

HSP 1 Score: 72.8 bits (177), Expect = 1.880e-14
Identity = 40/68 (58.82%), Postives = 51/68 (75.00%), Query Frame = 1 
Query:   16 QVRQQLARQDQDLEELGQHIDRVGEIGQVIHEELKDQHRMLSALDEDLEDAAEKMNFVMGHLAKLLKT 219
            Q R  + +QD+DLEELG  +DRV ++   I+ ELK Q+RML  L+ DL++A EKMNFVMG LAKLLKT
Sbjct:   69 QQRMIMEQQDEDLEELGYAVDRVNDMAVGINTELKTQNRMLKDLESDLDEATEKMNFVMGKLAKLLKT 136
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BLAST of mRNA_P-wetherbeei_contig5229.1.1 vs. uniprot
Match: A0A836CAK7_9STRA (Soluble NSF attachment protein receptor n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAK7_9STRA)

HSP 1 Score: 73.9 bits (180), Expect = 3.060e-14
Identity = 38/63 (60.32%), Postives = 48/63 (76.19%), Query Frame = 1 
Query:   31 LARQDQDLEELGQHIDRVGEIGQVIHEELKDQHRMLSALDEDLEDAAEKMNFVMGHLAKLLKT 219
            +ARQDQDLEELG+H+DRVG   + I+EEL+DQ RML  L+ED+    E M  VMG +AK+LKT
Sbjct:  161 IARQDQDLEELGEHVDRVGMHAETINEELRDQGRMLDDLNEDIVTTHESMGMVMGAMAKILKT 223
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BLAST of mRNA_P-wetherbeei_contig5229.1.1 vs. uniprot
Match: A0A7S2FMQ2_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FMQ2_9STRA)

HSP 1 Score: 73.6 bits (179), Expect = 4.110e-14
Identity = 37/63 (58.73%), Postives = 52/63 (82.54%), Query Frame = 1 
Query:   31 LARQDQDLEELGQHIDRVGEIGQVIHEELKDQHRMLSALDEDLEDAAEKMNFVMGHLAKLLKT 219
            + +QD++LEELG  +DRV ++   I+EELK Q++ML  L+ED+++AAEKMNFVMG +AKLLKT
Sbjct:  158 IRQQDEELEELGYAVDRVNDMAVGINEELKVQNQMLKTLEEDIDEAAEKMNFVMGKMAKLLKT 220
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BLAST of mRNA_P-wetherbeei_contig5229.1.1 vs. uniprot
Match: A0A7S2S2M2_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S2M2_9STRA)

HSP 1 Score: 72.8 bits (177), Expect = 8.040e-14
Identity = 40/68 (58.82%), Postives = 51/68 (75.00%), Query Frame = 1 
Query:   16 QVRQQLARQDQDLEELGQHIDRVGEIGQVIHEELKDQHRMLSALDEDLEDAAEKMNFVMGHLAKLLKT 219
            Q R  + +QD+DLEELG  +DRV ++   I+ ELK Q+RML  L+ DL++A EKMNFVMG LAKLLKT
Sbjct:  153 QQRMIMEQQDEDLEELGYAVDRVNDMAVGINTELKTQNRMLKDLESDLDEATEKMNFVMGKLAKLLKT 220
[Close]
BLAST of mRNA_P-wetherbeei_contig5229.1.1 vs. uniprot
Match: A0A812U2N4_9DINO (STX6 protein n=3 Tax=Symbiodinium TaxID=2949 RepID=A0A812U2N4_9DINO)

HSP 1 Score: 66.6 bits (161), Expect = 1.730e-11
Identity = 35/73 (47.95%), Postives = 50/73 (68.49%), Query Frame = 1 
Query:    1 DQIHKQVRQQLARQDQDLEELGQHIDRVGEIGQVIHEELKDQHRMLSALDEDLEDAAEKMNFVMGHLAKLLKT 219
            D+  +Q  Q +ARQD+DL EL     R+G   Q+++ ELK+Q ++L  LDED++  AEK+NFVM  + KLLKT
Sbjct:  151 DRQRQQQAQMMARQDEDLTELSLSAQRLGNTAQILNVELKEQQKLLEELDEDIDKEAEKLNFVMKRMGKLLKT 223
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BLAST of mRNA_P-wetherbeei_contig5229.1.1 vs. uniprot
Match: A0A7S1U751_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U751_9STRA)

HSP 1 Score: 66.2 bits (160), Expect = 2.390e-11
Identity = 36/63 (57.14%), Postives = 48/63 (76.19%), Query Frame = 1 
Query:   31 LARQDQDLEELGQHIDRVGEIGQVIHEELKDQHRMLSALDEDLEDAAEKMNFVMGHLAKLLKT 219
            L +QD+ L ELG+ +DRVG +   I+EEL DQ+RML+  + DL+ AAE+M F+MG LAKLLKT
Sbjct:  159 LRQQDETLVELGESVDRVGLMADRINEELVDQNRMLNDFEADLDRAAEEMGFMMGKLAKLLKT 221
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BLAST of mRNA_P-wetherbeei_contig5229.1.1 vs. uniprot
Match: A0A0G4G3N1_VITBC (t-SNARE coiled-coil homology domain-containing protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4G3N1_VITBC)

HSP 1 Score: 65.9 bits (159), Expect = 2.740e-11
Identity = 34/63 (53.97%), Postives = 46/63 (73.02%), Query Frame = 1 
Query:   31 LARQDQDLEELGQHIDRVGEIGQVIHEELKDQHRMLSALDEDLEDAAEKMNFVMGHLAKLLKT 219
            + +QD+ LEEL +  +R+      I+ EL+DQ RMLS LDED+++ AEKMNFVM  +AKLLKT
Sbjct:  143 MRQQDEQLEELAKSAERLNHTALTINHELEDQQRMLSELDEDVDNTAEKMNFVMKRMAKLLKT 205
[Close]
BLAST of mRNA_P-wetherbeei_contig5229.1.1 vs. uniprot
Match: A0A1Q9CKY6_SYMMI (STX6 protein n=2 Tax=Symbiodinium TaxID=2949 RepID=A0A1Q9CKY6_SYMMI)

HSP 1 Score: 65.9 bits (159), Expect = 6.930e-11
Identity = 35/73 (47.95%), Postives = 50/73 (68.49%), Query Frame = 1 
Query:    1 DQIHKQVRQQLARQDQDLEELGQHIDRVGEIGQVIHEELKDQHRMLSALDEDLEDAAEKMNFVMGHLAKLLKT 219
            D+  +Q  Q +ARQD+DL EL     R+G   Q+++ ELK+Q ++L  LDED++  AEK+NFVM  + KLLKT
Sbjct:  310 DRQRQQQAQLMARQDEDLTELSLSAQRLGNTAQILNVELKEQQKLLEELDEDIDKEAEKLNFVMKRMGKLLKT 382
[Close]
BLAST of mRNA_P-wetherbeei_contig5229.1.1 vs. uniprot
Match: A0A813C5Y5_9DINO (Serine/threonine-protein phosphatase n=2 Tax=Symbiodinium TaxID=2949 RepID=A0A813C5Y5_9DINO)

HSP 1 Score: 65.9 bits (159), Expect = 7.240e-11
Identity = 35/73 (47.95%), Postives = 50/73 (68.49%), Query Frame = 1 
Query:    1 DQIHKQVRQQLARQDQDLEELGQHIDRVGEIGQVIHEELKDQHRMLSALDEDLEDAAEKMNFVMGHLAKLLKT 219
            D+  +Q  Q +ARQD+DL EL     R+G   Q+++ ELK+Q ++L  LDED++  AEK+NFVM  + KLLKT
Sbjct:  520 DRQRQQQAQLMARQDEDLTELSLSAQRLGNTAQILNVELKEQQKLLEELDEDIDKEAEKLNFVMKRMGKLLKT 592
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5229.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FKW1_ECTSI1.090e-2067.16Soluble NSF Attachment Protein (SNAP) Receptor (SN... [more]
A0A7S2S2P5_9STRA1.880e-1458.82Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A836CAK7_9STRA3.060e-1460.32Soluble NSF attachment protein receptor n=1 Tax=Tr... [more]
A0A7S2FMQ2_9STRA4.110e-1458.73Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S2S2M2_9STRA8.040e-1458.82Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A812U2N4_9DINO1.730e-1147.95STX6 protein n=3 Tax=Symbiodinium TaxID=2949 RepID... [more]
A0A7S1U751_9STRA2.390e-1157.14Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A0G4G3N1_VITBC2.740e-1153.97t-SNARE coiled-coil homology domain-containing pro... [more]
A0A1Q9CKY6_SYMMI6.930e-1147.95STX6 protein n=2 Tax=Symbiodinium TaxID=2949 RepID... [more]
A0A813C5Y5_9DINO7.240e-1147.95Serine/threonine-protein phosphatase n=2 Tax=Symbi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5229contigP-wetherbeei_contig5229:395..613 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FKW1
Preferred nameSTX6
PFAMsSNARE,Syntaxin-6_N
Model size219
Max annot lvl2759|Eukaryota
KEGG koko:K02925,ko:K03691,ko:K08498,ko:K08499,ko:K08500
KEGG ReactionR09295
KEGG Pathwayko00514,ko03010,ko04130,map00514,map03010,map04130
KEGG ModuleM00177
Hectar predicted targeting categoryother localisation
GOsGO:0000138,GO:0000139,GO:0000149,GO:0001505,GO:0003674,GO:0003824,GO:0005484,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005768,GO:0005769,GO:0005770,GO:0005783,GO:0005794,GO:0005795,GO:0005802,GO:0005829,GO:0005886,GO:0006464,GO:0006486,GO:0006493,GO:0006807,GO:0006810,GO:0006836,GO:0006886,GO:0006887,GO:0006897,GO:0006904,GO:0006906,GO:0006996,GO:0007030,GO:0007032,GO:0007154,GO:0007267,GO:0007268,GO:0007269,GO:0008021,GO:0008104,GO:0008150,GO:0008152,GO:0008417,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009987,GO:0010008,GO:0010256,GO:0012505,GO:0012506,GO:0015031,GO:0015833,GO:0016020,GO:0016021,GO:0016043,GO:0016050,GO:0016079,GO:0016081,GO:0016192,GO:0016197,GO:0016482,GO:0016740,GO:0016757,GO:0016758,GO:0017156,GO:0019538,GO:0019905,GO:0022406,GO:0023052,GO:0023061,GO:0030133,GO:0030135,GO:0030136,GO:0030139,GO:0030285,GO:0030424,GO:0030658,GO:0030659,GO:0030672,GO:0031090,GO:0031201,GO:0031224,GO:0031300,GO:0031301,GO:0031410,GO:0031902,GO:0031974,GO:0031981,GO:0031982,GO:0031984,GO:0031985,GO:0032456,GO:0032588,GO:0032879,GO:0032880,GO:0032940,GO:0032991,GO:0033036,GO:0033267,GO:0034613,GO:0034645,GO:0036065,GO:0036066,GO:0036211,GO:0042147,GO:0042886,GO:0042995,GO:0043005,GO:0043170,GO:0043195,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043413,GO:0043679,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044306,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044431,GO:0044433,GO:0044440,GO:0044444,GO:0044446,GO:0044456,GO:0044463,GO:0044464,GO:0045055,GO:0045184,GO:0045202,GO:0045335,GO:0046903,GO:0046907,GO:0046922,GO:0048278,GO:0048284,GO:0048471,GO:0048489,GO:0050789,GO:0051179,GO:0051234,GO:0051640,GO:0051641,GO:0051648,GO:0051649,GO:0051650,GO:0051656,GO:0055037,GO:0060341,GO:0061024,GO:0061025,GO:0065007,GO:0065008,GO:0070013,GO:0070085,GO:0070382,GO:0070727,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0071944,GO:0090161,GO:0090174,GO:0097458,GO:0097479,GO:0097480,GO:0097708,GO:0098563,GO:0098588,GO:0098657,GO:0098791,GO:0098793,GO:0098796,GO:0098805,GO:0098916,GO:0099003,GO:0099501,GO:0099503,GO:0099504,GO:0099536,GO:0099537,GO:0099643,GO:0120025,GO:0120038,GO:0140029,GO:0140056,GO:0140096,GO:0150034,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576,GO:1903827
Exons1
Evalue1.79e-21
EggNOG OGsKOG3202@1|root,KOG3202@2759|Eukaryota
EC2.4.1.221
DescriptionSNAP receptor activity
Cds size219
COG categoryU
CAZyGT65,GT68
BRITEbr01610,ko00000,ko00001,ko00002,ko01000,ko01003,ko03011,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186784.0916183-CDS-P-wetherbeei_contig5229:394..6131683186784.0916183-CDS-P-wetherbeei_contig5229:394..613Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5229 395..613 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5229.1.1prot_P-wetherbeei_contig5229.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5229 395..613 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5229.1.1

>prot_P-wetherbeei_contig5229.1.1 ID=prot_P-wetherbeei_contig5229.1.1|Name=mRNA_P-wetherbeei_contig5229.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=73bp
DQIHKQVRQQLARQDQDLEELGQHIDRVGEIGQVIHEELKDQHRMLSALD
EDLEDAAEKMNFVMGHLAKLLKT
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mRNA from alignment at P-wetherbeei_contig5229:395..613+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5229.1.1 ID=mRNA_P-wetherbeei_contig5229.1.1|Name=mRNA_P-wetherbeei_contig5229.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=219bp|location=Sequence derived from alignment at P-wetherbeei_contig5229:395..613+ (Phaeothamnion wetherbeei SAG_119_79)
GATCAAATTCACAAGCAGGTGAGGCAGCAGCTGGCACGGCAGGACCAGGA
CCTGGAAGAGCTGGGGCAGCACATTGACCGCGTGGGGGAGATCGGGCAGG
TGATCCATGAGGAGCTCAAGGACCAGCACCGCATGCTGTCGGCCCTCGAC
GAAGATTTGGAGGATGCCGCTGAGAAGATGAACTTTGTCATGGGCCACCT
CGCTAAGCTCCTCAAGACC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5229:395..613+

>mRNA_P-wetherbeei_contig5229.1.1 ID=mRNA_P-wetherbeei_contig5229.1.1|Name=mRNA_P-wetherbeei_contig5229.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=219bp|location=Sequence derived from alignment at P-wetherbeei_contig5229:395..613+ (Phaeothamnion wetherbeei SAG_119_79)
GATCAAATTCACAAGCAGGTGAGGCAGCAGCTGGCACGGCAGGACCAGGA
CCTGGAAGAGCTGGGGCAGCACATTGACCGCGTGGGGGAGATCGGGCAGG
TGATCCATGAGGAGCTCAAGGACCAGCACCGCATGCTGTCGGCCCTCGAC
GAAGATTTGGAGGATGCCGCTGAGAAGATGAACTTTGTCATGGGCCACCT
CGCTAAGCTCCTCAAGACC
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