mRNA_P-wetherbeei_contig52278.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig52278.1.1
Unique NamemRNA_P-wetherbeei_contig52278.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig52278.1.1 vs. uniprot
Match: A0A0X8CIX2_9BRAD (Uncharacterized protein n=41 Tax=Bradyrhizobiaceae TaxID=41294 RepID=A0A0X8CIX2_9BRAD)

HSP 1 Score: 63.5 bits (153), Expect = 1.430e-10
Identity = 53/60 (88.33%), Postives = 58/60 (96.67%), Query Frame = 1 
Query:    1 MKVMKISAIAAALLASTALAIAQSSSTVGTGGSSAGGGTSNXXXXXXXXXXXXSGSGSAS 180
            M+++K+SA AAALLA TALA+AQSSSTVGTGGSSAGGGTSNXXXXXXXXXXXXSGSGSAS
Sbjct:    1 MRILKLSAAAAALLAGTALAVAQSSSTVGTGGSSAGGGTSNXXXXXXXXXXXXSGSGSAS 60
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BLAST of mRNA_P-wetherbeei_contig52278.1.1 vs. uniprot
Match: UPI00055B21BB (hypothetical protein n=2 Tax=Bradyrhizobium TaxID=374 RepID=UPI00055B21BB)

HSP 1 Score: 60.8 bits (146), Expect = 5.360e-10
Identity = 52/60 (86.67%), Postives = 57/60 (95.00%), Query Frame = 1 
Query:    1 MKVMKISAIAAALLASTALAIAQSSSTVGTGGSSAGGGTSNXXXXXXXXXXXXSGSGSAS 180
            M+++K+SA AAALLA TALA+AQSSSTVGTGGSSAGGGTS XXXXXXXXXXXXSGSGSAS
Sbjct:    1 MRILKLSAAAAALLAGTALAVAQSSSTVGTGGSSAGGGTSXXXXXXXXXXXXXSGSGSAS 60
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BLAST of mRNA_P-wetherbeei_contig52278.1.1 vs. uniprot
Match: A0A0R3CNH3_9BRAD (Uncharacterized protein n=9 Tax=Bradyrhizobiaceae TaxID=41294 RepID=A0A0R3CNH3_9BRAD)

HSP 1 Score: 60.8 bits (146), Expect = 1.280e-9
Identity = 52/60 (86.67%), Postives = 57/60 (95.00%), Query Frame = 1 
Query:    1 MKVMKISAIAAALLASTALAIAQSSSTVGTGGSSAGGGTSNXXXXXXXXXXXXSGSGSAS 180
            M+++K+SA AAALLA TALA+AQSSSTVGTGGSSAGGGTS XXXXXXXXXXXXSGSGSAS
Sbjct:    1 MRILKLSAAAAALLAGTALAVAQSSSTVGTGGSSAGGGTSXXXXXXXXXXXXXSGSGSAS 60
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BLAST of mRNA_P-wetherbeei_contig52278.1.1 vs. uniprot
Match: A0A7S7W9V6_9BRAD (Uncharacterized protein n=14 Tax=Bradyrhizobiaceae TaxID=41294 RepID=A0A7S7W9V6_9BRAD)

HSP 1 Score: 60.8 bits (146), Expect = 1.540e-9
Identity = 52/60 (86.67%), Postives = 57/60 (95.00%), Query Frame = 1 
Query:    1 MKVMKISAIAAALLASTALAIAQSSSTVGTGGSSAGGGTSNXXXXXXXXXXXXSGSGSAS 180
            M+++K+SA AAALLA TALA+AQSSSTVGTGGSSAGGGTS XXXXXXXXXXXXSGSGSAS
Sbjct:    1 MRILKLSAAAAALLAGTALAVAQSSSTVGTGGSSAGGGTSXXXXXXXXXXXXXSGSGSAS 60
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BLAST of mRNA_P-wetherbeei_contig52278.1.1 vs. uniprot
Match: I2QPI2_9BRAD (Uncharacterized protein n=1 Tax=Bradyrhizobium sp. WSM1253 TaxID=319003 RepID=I2QPI2_9BRAD)

HSP 1 Score: 57.4 bits (137), Expect = 9.260e-9
Identity = 52/60 (86.67%), Postives = 57/60 (95.00%), Query Frame = 1 
Query:    1 MKVMKISAIAAALLASTALAIAQSSSTVGTGGSSAGGGTSNXXXXXXXXXXXX-SGSGSA 177
            M+++K+SA AAALLA TALA+AQSSSTVGTGGSSAGGGTSNXXXXXXXXXXXX SGSGSA
Sbjct:    1 MRILKLSAAAAALLAGTALAVAQSSSTVGTGGSSAGGGTSNXXXXXXXXXXXXXSGSGSA 60
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BLAST of mRNA_P-wetherbeei_contig52278.1.1 vs. uniprot
Match: UPI001009287F (hypothetical protein n=1 Tax=Bradyrhizobium guangxiense TaxID=1325115 RepID=UPI001009287F)

HSP 1 Score: 56.6 bits (135), Expect = 5.560e-8
Identity = 34/41 (82.93%), Postives = 39/41 (95.12%), Query Frame = 1 
Query:    1 MKVMKISAIAAALLASTALAIAQSSSTVGTGGSSAGGGTSN 123
            M+++K+SA AAALLA TALA+AQSSSTVGTGGSSAGGGTSN
Sbjct:    1 MRILKLSAAAAALLAGTALAVAQSSSTVGTGGSSAGGGTSN 41
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BLAST of mRNA_P-wetherbeei_contig52278.1.1 vs. uniprot
Match: H5YK49_9BRAD (Uncharacterized protein n=4 Tax=Bradyrhizobium TaxID=374 RepID=H5YK49_9BRAD)

HSP 1 Score: 56.6 bits (135), Expect = 6.460e-8
Identity = 52/60 (86.67%), Postives = 57/60 (95.00%), Query Frame = 1 
Query:    1 MKVMKISAIAAALLASTALAIAQSSSTVGTGGSSAGGGTSNXXXXXXXXXXXX-SGSGSA 177
            M+++K+SA AAALLA TALA+AQSSSTVGTGGSSAGGGTSNXXXXXXXXXXXX SGSGSA
Sbjct:    1 MRILKLSAAAAALLAGTALAMAQSSSTVGTGGSSAGGGTSNXXXXXXXXXXXXXSGSGSA 60
[Close]
BLAST of mRNA_P-wetherbeei_contig52278.1.1 vs. uniprot
Match: A0A2U8QIG7_9BRAD (Uncharacterized protein n=1 Tax=Bradyrhizobium symbiodeficiens TaxID=1404367 RepID=A0A2U8QIG7_9BRAD)

HSP 1 Score: 54.7 bits (130), Expect = 1.860e-7
Identity = 33/40 (82.50%), Postives = 38/40 (95.00%), Query Frame = 1 
Query:    1 MKVMKISAIAAALLASTALAIAQSSSTVGTGGSSAGGGTS 120
            M+++K+SA AAALLA TALA+AQSSSTVGTGGSSAGGGTS
Sbjct:    1 MRILKLSAAAAALLAGTALAVAQSSSTVGTGGSSAGGGTS 40
[Close]
BLAST of mRNA_P-wetherbeei_contig52278.1.1 vs. uniprot
Match: UPI00190C9358 (hypothetical protein n=2 Tax=Bradyrhizobium TaxID=374 RepID=UPI00190C9358)

HSP 1 Score: 55.1 bits (131), Expect = 2.480e-7
Identity = 50/60 (83.33%), Postives = 57/60 (95.00%), Query Frame = 1 
Query:    1 MKVMKISAIAAALLASTALAIAQSSSTVGTGGSSAGGGTSNXXXXXXXXXXXX-SGSGSA 177
            M+++K++A AAAL+A TALA+AQSSSTVGTGGSSAGGGTSNXXXXXXXXXXXX SGSGSA
Sbjct:    1 MRILKLTAAAAALVAGTALAVAQSSSTVGTGGSSAGGGTSNXXXXXXXXXXXXXSGSGSA 60
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig52278.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
A0A0X8CIX2_9BRAD1.430e-1088.33Uncharacterized protein n=41 Tax=Bradyrhizobiaceae... [more]
UPI00055B21BB5.360e-1086.67hypothetical protein n=2 Tax=Bradyrhizobium TaxID=... [more]
A0A0R3CNH3_9BRAD1.280e-986.67Uncharacterized protein n=9 Tax=Bradyrhizobiaceae ... [more]
A0A7S7W9V6_9BRAD1.540e-986.67Uncharacterized protein n=14 Tax=Bradyrhizobiaceae... [more]
I2QPI2_9BRAD9.260e-986.67Uncharacterized protein n=1 Tax=Bradyrhizobium sp.... [more]
UPI001009287F5.560e-882.93hypothetical protein n=1 Tax=Bradyrhizobium guangx... [more]
H5YK49_9BRAD6.460e-886.67Uncharacterized protein n=4 Tax=Bradyrhizobium Tax... [more]
A0A2U8QIG7_9BRAD1.860e-782.50Uncharacterized protein n=1 Tax=Bradyrhizobium sym... [more]
UPI00190C93582.480e-783.33hypothetical protein n=2 Tax=Bradyrhizobium TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig52278contigP-wetherbeei_contig52278:295..546 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog1304878.AUGD01000001_gene635
Model size252
Max annot lvl28211|Alphaproteobacteria
Hectar predicted targeting categorychloroplast
Exons1
Evalue2.35e-11
EggNOG OGs2F4JX@1|root,33X9M@2|Bacteria,1N3E1@1224|Proteobacteria,2UCVJ@28211|Alphaproteobacteria,3K0JI@41294|Bradyrhizobiaceae
Cds size252
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186783.8965406-CDS-P-wetherbeei_contig52278:294..5461683186783.8965406-CDS-P-wetherbeei_contig52278:294..546Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig52278 295..546 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig52278.1.1prot_P-wetherbeei_contig52278.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig52278 295..546 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig52278.1.1

>prot_P-wetherbeei_contig52278.1.1 ID=prot_P-wetherbeei_contig52278.1.1|Name=mRNA_P-wetherbeei_contig52278.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=84bp
MKVMKISAIAAALLASTALAIAQSSSTVGTGGSSAGGGTSNSTVGTGGSS
AGGSGSGSASTLGTGGTSAGGGTSSSSVGTGGSA
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mRNA from alignment at P-wetherbeei_contig52278:295..546+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig52278.1.1 ID=mRNA_P-wetherbeei_contig52278.1.1|Name=mRNA_P-wetherbeei_contig52278.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=252bp|location=Sequence derived from alignment at P-wetherbeei_contig52278:295..546+ (Phaeothamnion wetherbeei SAG_119_79)
ATGAAGGTCATGAAGATTTCCGCGATCGCCGCGGCATTGTTGGCGAGTAC
TGCGCTTGCCATCGCACAGTCGAGTTCGACTGTCGGAACGGGTGGATCTT
CCGCGGGCGGCGGCACCAGCAATTCCACCGTTGGAACGGGCGGCTCGTCC
GCGGGTGGTTCTGGCAGCGGTTCAGCGTCGACGCTCGGGACCGGCGGCAC
GTCGGCCGGCGGAGGTACGAGCAGTTCGAGCGTAGGGACCGGTGGCTCCG
CC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig52278:295..546+

>mRNA_P-wetherbeei_contig52278.1.1 ID=mRNA_P-wetherbeei_contig52278.1.1|Name=mRNA_P-wetherbeei_contig52278.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=252bp|location=Sequence derived from alignment at P-wetherbeei_contig52278:295..546+ (Phaeothamnion wetherbeei SAG_119_79)
ATGAAGGTCATGAAGATTTCCGCGATCGCCGCGGCATTGTTGGCGAGTAC
TGCGCTTGCCATCGCACAGTCGAGTTCGACTGTCGGAACGGGTGGATCTT
CCGCGGGCGGCGGCACCAGCAATTCCACCGTTGGAACGGGCGGCTCGTCC
GCGGGTGGTTCTGGCAGCGGTTCAGCGTCGACGCTCGGGACCGGCGGCAC
GTCGGCCGGCGGAGGTACGAGCAGTTCGAGCGTAGGGACCGGTGGCTCCG
CC
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