mRNA_P-wetherbeei_contig5225.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5225.1.1
Unique NamemRNA_P-wetherbeei_contig5225.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig5225.1.1 vs. uniprot
Match: D7FQA0_ECTSI (PPM-type phosphatase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQA0_ECTSI)

HSP 1 Score: 265 bits (678), Expect = 3.300e-83
Identity = 147/289 (50.87%), Postives = 187/289 (64.71%), Query Frame = 1
Query:    1 PPGYRSFVTSSHSDDSPFIDSMHPTNEDTLIAVDDIVERFMFAPAFAQYAPLTGIFAVFDGHGGRGCSQYLKDHLTRAIVTNENFESIDMPSEEALILCVEDALLNMEEGFCRIARKKPDRSGACACVVVVRGSMLCAANVGDCQAILVEHDGNVVQLSRPHRATDPAEVARIEAKGGTVINGRVMGALEPSRSIGDIDLKSGLAPAVIPTPHVTTRSLPYRRGQGPSVLVVASDGVWDTLAVQAVVDIVRTETDLMDPKKMRLAARRLVRRAREAGSTDDVTCVVAFL 867
            PPGY    +S+ S  SPF+   HPTNED  +  DD+V     AP   +  PL  +F VFDGHGG G S+++ +HL   I  +  +ESID P++EAL   VE+ + ++E+ +   +++  D SG CACVV +RGS+LCAANVGDCQAIL+   G +V LSRPHRA D  E ARI + GG V+ GRVMG LEPSR IGD D+K      VI  P+V  RSLPY RGQ PS+LVVASDGVWD +  QA V  + TE  +   K  R  ++ LV  AREAGS DD+T V+A L
Sbjct:   52 PPGYPCVRSSTFSSASPFLCPEHPTNEDRALVFDDMVSVLKLAPTGTR-GPLACLFGVFDGHGGDGASKFVANHLHHLIGRSAFYESIDYPADEALASAVEEGVASVEQAYTDWSKRSGDTSGCCACVVAIRGSVLCAANVGDCQAILITDKGAIVSLSRPHRAVDLDEKARIRSNGGKVVQGRVMGVLEPSRVIGDYDIKRTWPGCVIAEPYVLVRSLPYTRGQEPSILVVASDGVWDFMT-QASVSKLVTEA-IRKQKDPRQVSKELVAAAREAGSGDDITVVIAKL 337          
BLAST of mRNA_P-wetherbeei_contig5225.1.1 vs. uniprot
Match: A0A836CMW2_9STRA (Phosphatase 2C-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMW2_9STRA)

HSP 1 Score: 142 bits (357), Expect = 2.300e-36
Identity = 94/245 (38.37%), Postives = 129/245 (52.65%), Query Frame = 1
Query:  166 FAVFDGHGGRGCSQYLKDHLTRAIVTNENFESIDMPSEEALILCVEDALLNMEEGFCRIARKKPDRSGACACVVVVRGSMLCAANVGDCQAIL-VEHDGNVVQLSRPHRATDPAEVARIEAKGGTVINGRVMGALEPSRSIGDIDLKSGLAPAVIPTPHVTTRSLP--YRRGQGPS----------VLVVASDGVWDTLAVQAVVDIVRTETDLMDPKKMRL-AARRLVRRAREAGSTDDVTCVV 858
            FAVFDGHGG  CSQ+L D+L   +   +++    +   + L   +  AL   E  +  +A K+ D SGAC  V +     +C ANVGDC A+L +    + V LS  HR+  P E  RIEA GG VIN R  G LEPSRSIGD+DLK     AV   P++    +P   +  +G +           L+ ASDG+WD +A   VVD+ +    +   K  +   AR+LVR A   G+ DD T +V
Sbjct:    9 FAVFDGHGGSRCSQWLADNLEEDLRCADSWRQEGLTLPKRLKGALVQALKRAEYKYLDLAFKESDHSGACVVVGLYCEGHVCVANVGDCLAVLYLPGADSHVDLSVAHRSRQPEEARRIEAAGGLVINNRAFGVLEPSRSIGDLDLKRHCRGAVTADPYIREVVIPPPQQPAEGAAKKKPALQEAPFLLFASDGLWDVVAAPVVVDLTKKSLKVWRKKPAKSNPARQLVRAAIRHGTMDDTTAIV 253          
BLAST of mRNA_P-wetherbeei_contig5225.1.1 vs. uniprot
Match: A0A2V3J3C2_9FLOR (Protein kinase and PP2C-like domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J3C2_9FLOR)

HSP 1 Score: 135 bits (339), Expect = 2.730e-31
Identity = 91/235 (38.72%), Postives = 130/235 (55.32%), Query Frame = 1
Query:  163 IFAVFDGHGGRGCSQYLKDHLTRAIVTNENFESIDMPSEEALILCVEDALLNMEEGFCRIARKKPDRSGACACVVVVRGSMLCAANVGDCQAILVEHDGNVVQLSRPHRATDPAEVARIEAKGGTV-INGRVMGALEPSRSIGDIDLKSGLAPAVIPTPHVTTRSLPYRRGQGPSVLVVASDGVWDTLAVQAVVDIVRTETDLMDPKKMRLAARRLVRRAREAGSTDDVTCVVAF 864
            +FAVFDGHGG+ CS++   H   A+    + E  D   E ALI   ED    ++  F + +  + + SG  A   +V  S L  AN GDC+ IL   DG V+ LS+ H ATDPAE AR+ A+GG+V ++GRVMG L  SRS+GD   K  ++     TP V    L          +++ASDG+WD + +     +VR+   + D     LAA+RL  +A E GS D+++ +VAF
Sbjct:  421 LFAVFDGHGGQACSEFAATHFPGALFRAWSNE--DSTPESALIHAFED----VDYAFLKDSSME-ENSGCTALSALVVDSTLFVANAGDCRCILSRKDGTVLSLSKDHLATDPAEQARVLARGGSVSVSGRVMGCLMVSRSLGDRPFKRYISS----TPDVVKHHLT----NDDDFIILASDGLWDVVPIDEAAALVRSTVRVPD-----LAAKRLALKAVELGSDDNISVIVAF 635          
BLAST of mRNA_P-wetherbeei_contig5225.1.1 vs. uniprot
Match: A0A0H5R981_9EUKA (PPM-type phosphatase domain-containing protein (Fragment) n=1 Tax=Spongospora subterranea TaxID=70186 RepID=A0A0H5R981_9EUKA)

HSP 1 Score: 126 bits (317), Expect = 1.320e-29
Identity = 84/240 (35.00%), Postives = 121/240 (50.42%), Query Frame = 1
Query:  166 FAVFDGHGGRGCSQYLKDHLT----RAIVTNENFESIDMPSEEALI-LCVEDALLNMEEGFCRIARKKPDRSGACACVVVVRGSMLCAANVGDCQAILVEHDGNVVQLSRPHRATDPAEVARIEAKGGTVINGRVMGALEPSRSIGDIDLKSGLAPAVIPTPHVTTRSLPYRRG--QGPSVLVVASDGVWDTLAVQAVVDIVRTETDLM--DPKKMRLAARRLVRRAREAGSTDDVTCVV 858
            F V DGH G   S +  DHLT    RA+   E+     +P     I   +  A    +  FC+ AR+    SGAC     +RG  L  AN GDC  +  +++     + + H A D  E  R+   GG +   RVMG L PSR  GD D++     ++IP P + +  +P  +   Q P  +V+ SDGV+DTL++ A+V IV+    L    P +  +AAR+LVR+   A S DDVT +V
Sbjct:  122 FMVSDGHDGAEASSFAHDHLTWNVHRALQVLED----TLPDGICTIDHALHHAFFTTDNQFCQKARRSSCTSGACVLAATIRGRHLALANAGDCGVVYHDNEAQHGLVCKRHSAADIDEANRVRLAGGFIRGARVMGILSPSRGFGDTDVRDSCPGSIIPDPDIRSIVIPLIKDTEQSPVFIVMGSDGVFDTLSLDAIVSIVKRSLLLHRNKPNRAEIAARKLVRQC-AASSDDDVTAIV 356          
BLAST of mRNA_P-wetherbeei_contig5225.1.1 vs. uniprot
Match: A0A067C0L6_SAPPC (PPM-type phosphatase domain-containing protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067C0L6_SAPPC)

HSP 1 Score: 121 bits (303), Expect = 6.610e-28
Identity = 88/242 (36.36%), Postives = 122/242 (50.41%), Query Frame = 1
Query:  163 IFAVFDGHGGRGCSQYLKDHLTRAIVTNENFESIDMPSEEALILCVEDALLNMEEGFCRIARKKPDRSGAC--ACVVVVRGS-MLCAANVGDCQAILVE-----HDGNVVQ-LSRPHRATDPAEVARIEAKGGTVINGRVMGALEPSRSIGDIDLKS-GLAPAVIPTPHVTTRSLPYRRGQGPSVLVVASDGVWDTLAVQAVVDIVRTETDLMDPKKMRLAARRLVRRAREAGSTDDVTCVV 858
            +FAV DGHGG   S+Y+K HL   I          +          E A+  +E  F +IA    D SGAC  A +V+  GS      N+GDC+   +E     H    V  LS  H+A+ P E  RI   GG+V+ GRV G L PSRSIGDID+K+ G+   V+  P ++   +        S+ V+A+DGVWD L+   V+DI     D    K  + A+  + + A E GS DD+T +V
Sbjct:   95 LFAVMDGHGGALASEYVKTHLVSVIDEQSEITKASL----------ETAVATLEARFNQIAADASDYSGACFVALLVLQDGSHRRFVMNLGDCRIAALEVSPQAHPKRQVHALSTDHKASCPLEKRRILVAGGSVVGGRVAGVLAPSRSIGDIDMKAKGMEGWVVAVPEISEGKIARN-----SIYVLATDGVWDVLSNDEVLDIAEDVLDDEYEKNCQRASDAIAKEAVERGSRDDITAIV 321          
BLAST of mRNA_P-wetherbeei_contig5225.1.1 vs. uniprot
Match: A0A813BZ42_9DINO (PTC1 protein (Fragment) n=1 Tax=Symbiodinium necroappetens TaxID=1628268 RepID=A0A813BZ42_9DINO)

HSP 1 Score: 123 bits (308), Expect = 3.700e-27
Identity = 99/273 (36.26%), Postives = 140/273 (51.28%), Query Frame = 1
Query:   79 EDTLIAVDDIVERFMFAPAFAQYAPLTGIFAVFDGHGGRGCSQYLKDHLTRAIVTNENFESIDMPSEEALILCVEDALLNMEEGFCRIARK-KPDRSGACACVVVV-------RGSMLCAANVGDCQAILVEHDGNVVQLSRPHRATDPAEVARIEAKGGTVINGRVMGALEPSRSIGDIDLKSGLAPAVIPTPHVTTRSLPYRRGQGPSVLVVASDGVWDTLA---VQAVVDIVRTETDLMDPKKMRLAARRLVRRAREAGSTDDVTCVVAF 864
            ED+ + +D ++          Q   L G FAV+DGHGGR    + +  L   +V +E      M  E      V + L      F R+  + K   +  C C   V        G  L +ANVGD +AI++E  G+  +L+R HR TDPAE+ R+EA+GG V  GRV+G L  SR++GD  LKS     V   PH+ TR +P       +VLV+ASDG+WD ++    +AVVD  R   + +  K    A   L++ A  AGSTD+ T +VAF
Sbjct:  311 EDSSVIIDPLLAE--------QDGELWGYFAVYDGHGGRQAVDFCETKL-HGLVLDELLNVTRMAGEPVADEVVGEVL---SRAFRRVDEQLKLLGTWRCGCTATVVLAHRTASGLRLHSANVGDSRAIVLE-SGSECRLTRDHRPTDPAEIQRVEAEGGFVARGRVVGQLGVSRALGDHSLKSV---GVTWHPHICTREVPQ-----DAVLVIASDGLWDVMSDGDARAVVD--RNVAERLQDK----APEFLIKAALRAGSTDNTTALVAF 556          
BLAST of mRNA_P-wetherbeei_contig5225.1.1 vs. uniprot
Match: A0A1Q9DEE4_SYMMI (Protein phosphatase 2C-like 1 n=3 Tax=Symbiodinium TaxID=2949 RepID=A0A1Q9DEE4_SYMMI)

HSP 1 Score: 123 bits (308), Expect = 5.000e-27
Identity = 99/273 (36.26%), Postives = 140/273 (51.28%), Query Frame = 1
Query:   79 EDTLIAVDDIVERFMFAPAFAQYAPLTGIFAVFDGHGGRGCSQYLKDHLTRAIVTNENFESIDMPSEEALILCVEDALLNMEEGFCRIARK-KPDRSGACACVVVV-------RGSMLCAANVGDCQAILVEHDGNVVQLSRPHRATDPAEVARIEAKGGTVINGRVMGALEPSRSIGDIDLKSGLAPAVIPTPHVTTRSLPYRRGQGPSVLVVASDGVWDTLA---VQAVVDIVRTETDLMDPKKMRLAARRLVRRAREAGSTDDVTCVVAF 864
            ED+ + +D ++          Q   L G FAV+DGHGGR    + +  L   +V +E      M  E      V + L      F R+  + K   +  C C   V        G  L +ANVGD +AI++E  G+  +L+R HR TDPAE+ R+EA+GG V  GRV+G L  SR++GD  LKS     V   PH+ TR +P       +VLV+ASDG+WD ++    +AVVD  R   + +  K    A   L++ A  AGSTD+ T +VAF
Sbjct:  575 EDSSVIIDPLLAE--------QDGELWGYFAVYDGHGGRQAVDFCETKL-HGLVLDELLNVTRMAGEPVADEVVGEVL---SRAFRRVDEQLKLLGTWRCGCTATVVLAHRTASGLRLHSANVGDSRAIVLE-SGSECRLTRDHRPTDPAEIQRVEAEGGFVARGRVVGQLGVSRALGDHSLKSV---GVTWHPHICTREVPQ-----DAVLVIASDGLWDVMSDGDARAVVD--RNVAERLQDK----APEFLIKAALRAGSTDNTTALVAF 820          
BLAST of mRNA_P-wetherbeei_contig5225.1.1 vs. uniprot
Match: A0A812V1K3_SYMPI (PTC1 protein n=1 Tax=Symbiodinium pilosum TaxID=2952 RepID=A0A812V1K3_SYMPI)

HSP 1 Score: 120 bits (300), Expect = 9.630e-27
Identity = 99/273 (36.26%), Postives = 140/273 (51.28%), Query Frame = 1
Query:   79 EDTLIAVDDIVERFMFAPAFAQYAPLTGIFAVFDGHGGRGCSQYLKDHLTRAIVTNENFESIDMPSEEALILCVEDALLNMEEGFCRIARK-KPDRSGACACVVVV-------RGSMLCAANVGDCQAILVEHDGNVVQLSRPHRATDPAEVARIEAKGGTVINGRVMGALEPSRSIGDIDLKSGLAPAVIPTPHVTTRSLPYRRGQGPSVLVVASDGVWDTLA---VQAVVDIVRTETDLMDPKKMRLAARRLVRRAREAGSTDDVTCVVAF 864
            ED+ +A+D ++          Q   + G FAV+DGHGGR    + +  L   +V +E      M  E      V + L      F R+  + K   +  C C   V        G  L AANVGD +AI+++  G+  +L+R HR TDPAE+ R+EA+GG V  GRV+G L  SR++GD  LKS     V   PHV TR +        + LV+ASDG+WD +A    +AVV+  R+  + M  K   L    L++ A  AGSTD+ T +VAF
Sbjct:  163 EDSSVAIDPLLVE--------QDGEVWGYFAVYDGHGGRQAVDFCEAKL-HGLVLDELLNVTRMAGETVADDVVAEVL---SRAFRRVDEQLKLLGTWRCGCTATVVLAHRTLTGLRLHAANVGDSRAIVID-SGSESRLTRDHRPTDPAEIQRVEAEGGFVARGRVVGQLGVSRALGDHSLKSV---GVTWHPHVCTREVAQ-----DAALVIASDGLWDVMADGDARAVVE--RSVAERMYDKAPEL----LIKAALRAGSTDNTTALVAF 408          
BLAST of mRNA_P-wetherbeei_contig5225.1.1 vs. uniprot
Match: A0A7S3PJ58_9STRA (Hypothetical protein n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3PJ58_9STRA)

HSP 1 Score: 115 bits (288), Expect = 3.200e-26
Identity = 90/275 (32.73%), Postives = 129/275 (46.91%), Query Frame = 1
Query:   73 TNEDTLIAVDDIVERFMFAPAFAQYAPLTGIFAVFDGHGGRGCSQYLKDHLTRAIVTNENFESIDMPSEEALILCVEDALL-----NMEEGFCRIARKKPD---RSGACACVVVVRGSMLCAANVGDCQAILVEHDGNVVQLSRPHRATDPAEVARIEAKGGTVINGRVMGALEPSRSIGDIDLKSGLAPAVIPTPHVTTRSLPYRRGQGPSVLVVASDGVWDTLAVQAVVDIVRTETDLMDPKKM--RLAARRLVRRAREAGSTDDVTCVVAFL 867
            T ED  +A+D+   R           P  G+FAVFDGHGGRG   YL  +    + T   ++  +    E    C+  A L       +EG             R+  C     +R    CA NVGD +A+L    G   +L+  H+A+DP+E+ RIE  GG ++  RV+G L  SRS GD  +K      V+  P  TT  L          L+VA DG+WD    +  V  V    +++D +K+    AARRLV+ A   GS D+VT ++ +L
Sbjct:   27 TMEDAHVAIDNFAGR-----------PGQGLFAVFDGHGGRGIVDYLSKNFCNVLETELGYDGGNRSINE----CLTSAYLITDIQTSQEGLMSSGSTAASCLIRTEECGDANELRRVCYCA-NVGDTRAVLCRRGGTAQRLTFDHKASDPSEIKRIEEAGGFILRKRVLGILSVSRSFGDHAMKK----FVVARPFTTTTMLT----DTDRFLIVACDGIWDVFTDEEAVTYV---CEILDEEKVPENEAARRLVQEAINRGSQDNVTVLIVYL 274          
BLAST of mRNA_P-wetherbeei_contig5225.1.1 vs. uniprot
Match: A0A1V9ZR45_9STRA (PPM-type phosphatase domain-containing protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZR45_9STRA)

HSP 1 Score: 116 bits (290), Expect = 4.280e-26
Identity = 92/249 (36.95%), Postives = 129/249 (51.81%), Query Frame = 1
Query:  163 IFAVFDGHGGRGCSQYLKDHLTRAIVTNENFESIDMPSEEALILCVEDALLNMEEGFCRIARKKPDRSGAC--ACVVVVRGSML-CAANVGDCQAILVE-----HDGNVVQ-LSRPHRATDPAEVARIEAKGGTVINGRVMGALEPSRSIGDIDLK-SGLAPAVIPTPHVTTRSLPYRRGQGPSVLVVASDGVWDTLAVQAVVDIVRT---ETDLMDPKKMRLAARR----LVRRAREAGSTDDVTCVV 858
            +FAV DGHGG   S+Y+K++L R +          + +          A+  +E  F ++A    D SGAC  A +VV  GS      NVGDC+   +E     H    +  LS  H+A+DP E  RI   GG+V++GRV G L PSRSIGDID+K  G+   VI  P ++  +L        S+ V+A+DGVWD L+   V+DI      ETD  D + +  A +R    + + A   GS DD+T VV
Sbjct:   86 VFAVMDGHGGDLASEYVKNNLVRVLDEQPELTKSSIAA----------AVATLETIFNKLASTARDYSGACFVALIVVEDGSARRFVVNVGDCRISALEVSARGHPKRTIHALSNDHKASDPNEKRRILVAGGSVVSGRVAGVLAPSRSIGDIDMKVPGMEGWVIAEPEISEGTL-----CADSIYVLATDGVWDVLSDDEVLDIAEETLRETD--DGEAIDDACQRACDAIAKEAIMRGSRDDITAVV 317          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5225.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FQA0_ECTSI3.300e-8350.87PPM-type phosphatase domain-containing protein n=2... [more]
A0A836CMW2_9STRA2.300e-3638.37Phosphatase 2C-like domain-containing protein n=1 ... [more]
A0A2V3J3C2_9FLOR2.730e-3138.72Protein kinase and PP2C-like domain-containing pro... [more]
A0A0H5R981_9EUKA1.320e-2935.00PPM-type phosphatase domain-containing protein (Fr... [more]
A0A067C0L6_SAPPC6.610e-2836.36PPM-type phosphatase domain-containing protein n=2... [more]
A0A813BZ42_9DINO3.700e-2736.26PTC1 protein (Fragment) n=1 Tax=Symbiodinium necro... [more]
A0A1Q9DEE4_SYMMI5.000e-2736.26Protein phosphatase 2C-like 1 n=3 Tax=Symbiodinium... [more]
A0A812V1K3_SYMPI9.630e-2736.26PTC1 protein n=1 Tax=Symbiodinium pilosum TaxID=29... [more]
A0A7S3PJ58_9STRA3.200e-2632.73Hypothetical protein n=1 Tax=Aplanochytrium stocch... [more]
A0A1V9ZR45_9STRA4.280e-2636.95PPM-type phosphatase domain-containing protein n=1... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5225contigP-wetherbeei_contig5225:1613..3840 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FQA0
PFAMsPP2C
Model size1102
Max annot lvl2759|Eukaryota
KEGG koko:K14803,ko:K17499,ko:K17506
Hectar predicted targeting categoryother localisation
Exons3
Evalue6.33e-81
EggNOG OGsCOG0631@1|root,KOG0698@2759|Eukaryota
EC3.1.3.16
Descriptionprotein serine/threonine phosphatase activity
Cds size810
COG categoryT
BRITEko00000,ko01000,ko01009,ko03009
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186783.5541654-UTR-P-wetherbeei_contig5225:1612..16751683186783.5541654-UTR-P-wetherbeei_contig5225:1612..1675Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5225 1613..1675 +
1683186783.58652-UTR-P-wetherbeei_contig5225:3611..38401683186783.58652-UTR-P-wetherbeei_contig5225:3611..3840Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5225 3612..3840 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186783.563447-CDS-P-wetherbeei_contig5225:1675..18461683186783.563447-CDS-P-wetherbeei_contig5225:1675..1846Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5225 1676..1846 +
1683186783.5710828-CDS-P-wetherbeei_contig5225:2528..28311683186783.5710828-CDS-P-wetherbeei_contig5225:2528..2831Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5225 2529..2831 +
1683186783.5788465-CDS-P-wetherbeei_contig5225:3275..36111683186783.5788465-CDS-P-wetherbeei_contig5225:3275..3611Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5225 3276..3611 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5225.1.1prot_P-wetherbeei_contig5225.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5225 1676..3611 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5225.1.1

>prot_P-wetherbeei_contig5225.1.1 ID=prot_P-wetherbeei_contig5225.1.1|Name=mRNA_P-wetherbeei_contig5225.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=270bp
MHPTNEDTLIAVDDIVERFMFAPAFAQYAPLTGIFAVFDGHGGRGCSQYL
KDHLTRAIVTNENFESIDMPSEEALILCVEDALLNMEEGFCRIARKKPDR
SGACACVVVVRGSMLCAANVGDCQAILVEHDGNVVQLSRPHRATDPAEVA
RIEAKGGTVINGRVMGALEPSRSIGDIDLKSGLAPAVIPTPHVTTRSLPY
RRGQGPSVLVVASDGVWDTLAVQAVVDIVRTETDLMDPKKMRLAARRLVR
RAREAGSTDDVTCVVAFLR*
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mRNA from alignment at P-wetherbeei_contig5225:1613..3840+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5225.1.1 ID=mRNA_P-wetherbeei_contig5225.1.1|Name=mRNA_P-wetherbeei_contig5225.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2228bp|location=Sequence derived from alignment at P-wetherbeei_contig5225:1613..3840+ (Phaeothamnion wetherbeei SAG_119_79)
CCCCCAGGATATCGCTCGTTTGTGACGAGCTCTCACTCCGATGACTCTCC CTTCATCGACTCGATGCATCCGACGAACGAAGACACGCTGATTGCCGTGG ACGATATTGTCGAGAGGTTCATGTTCGCGCCGGCGTTCGCGCAGTATGCG CCTCTCACCGGAATATTCGCCGTCTTTGACGGCCACGGAGGTCGCGGCTG CAGCCAATACCTGAAAGACCACCTTACGCGAGCTGTGAGTCGTGAGATCG GAAATTGACGACTGCGGAGTTTTGCTCTTGCCTTCGCGATCGTCTCGTTC CGGAGCCTTTGTCGTAGTCCCTAATGGCAAGCTACAAAGTCGTTGGCGAA TTTGCCAAATTGGGCCGGCTCTGCGTCGGGAACCCGTTCAGCATGCTTTG GCGGGAAAAGGAGAATTTGGGGAGGAGGGTGGTAGCTTTAGAAAGAAAAG TGGGGCAAGAAAAAGAAACGGGAGTAAGACATGGAAAAAGAAAAGGATGC AAGTGTGCGCGGGTGCATCGAAGCCCGAAGGACGGCACCCCCCCCAAGAG GGCGGCGCCCTGCCTTTAGAAGGCTCTGTTGCCGAAGCGGCATTATATCG GCGGGGGCACAAACATGAGAGCGCACTGCATTTGTCGTGCCCCCTTGTCA GGGGTCACGTTGCCATCTCTTTTTGGGGAGGCCCCTGGCGACGCACACGT CAACACACTTGTGCCACCGGCGGAAATTAGTGGTGCCGATGGCAAGCATG GTAGCTCAAGAGTTAATTTGCTGTTTTTTGGTTTTCTTCCATTTATTTAC AATTTAGGCTGTGTCGGGTTACGAAAAACTGTGCCTTCCTCGCAAATGCT GTCGCGAATAACTGCCAATCCACATGCCCGCATACAACGGCGCCTTTGCT TCTTTTTCCTGACCAGATCGTCACGAACGAGAACTTTGAGTCCATCGACA TGCCGTCCGAAGAGGCGCTCATCCTATGCGTGGAGGATGCGCTGCTGAAT ATGGAGGAGGGATTCTGCCGCATCGCCCGCAAGAAACCCGACCGCTCCGG CGCCTGCGCCTGCGTGGTGGTGGTGCGCGGCTCGATGTTGTGTGCGGCCA ACGTAGGCGACTGCCAGGCCATCCTCGTTGAACATGACGGCAACGTGGTG CAGCTCTCGCGGCCGCACCGCGCCACCGACCCGGCCGAGGTGGCGCGCAT CGAAGCCAAGGGCGGGACGGTGAGTCAATTATCCAGACGTGTCAAGTCAA GTGGTCGCGTCAGGCTGCCTGCCGATTGCTTGTTTTCTTTTGTCTTTCTG GCTTGGCTAATTCAGTTTTCTCTTGTGTTTCGCCGGAGGAAGCTGGGAGG GAATCTTACTTTTCTGCGGCGTCTCTTCAACGGTGGCGAAGAGGCATAGC AATCGTTGTTTTGCAGGTTTTCTCTGAGTTTAGGGACAGGCAAAAGTAGA CGAGATGATTGATGCTTCACGGCGGCGCGAGAAGGAATGATCTTTACAAG ATGTGCGCCTTGAAATATTGGGGCGTTACTGTTGAGACAACGATGCAGGC CTGCCCAGTTGTTCTGGTATGCTTCATCCTCTGGTGTTTCGAACCATTGC CTGAAAGTACTCATCCATATGTGCTCCGGGCCGCTCACCGCTCCTGGGCG AAATGGAAAACAGGTGATCAACGGGCGTGTCATGGGCGCGCTGGAGCCGT CGCGCTCCATCGGCGACATCGACCTCAAGAGCGGCCTGGCGCCCGCCGTC ATTCCCACGCCGCACGTCACCACGCGCTCCCTGCCCTACAGGCGCGGCCA GGGCCCCAGCGTTCTCGTGGTGGCGTCGGACGGCGTTTGGGACACGCTCG CGGTGCAGGCCGTTGTGGACATTGTGCGGACCGAGACGGACCTGATGGAT CCCAAGAAGATGCGGCTGGCGGCGCGCCGGCTCGTGCGGCGGGCGCGCGA GGCCGGCAGCACCGACGACGTCACGTGCGTCGTCGCCTTCCTGCGATAGC GGCGGGCCCGGCCCTTTGTAAGCGTAGGAGGGACGTTGTTCTGACAGAAA GATTTGTCTTGCTTATCGCGGGCGTTGCCCTTCGTGCGCCGGCTCTCCAC GTAGCAGAAGTGTGGCCAGCAGCCCTGTTTCTGGTGCAACTTTTTTCCAA ATGGCGCGGCTCGATGGTTGTGTTTCGTGGCAGCTGCTCGTTGTTGGAAT GGTGTACATGGTTGGCGGGCAACATCTA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5225:1613..3840+

>mRNA_P-wetherbeei_contig5225.1.1 ID=mRNA_P-wetherbeei_contig5225.1.1|Name=mRNA_P-wetherbeei_contig5225.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=810bp|location=Sequence derived from alignment at P-wetherbeei_contig5225:1613..3840+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCATCCGACGAACGAAGACACGCTGATTGCCGTGGACGATATTGTCGA
GAGGTTCATGTTCGCGCCGGCGTTCGCGCAGTATGCGCCTCTCACCGGAA
TATTCGCCGTCTTTGACGGCCACGGAGGTCGCGGCTGCAGCCAATACCTG
AAAGACCACCTTACGCGAGCTATCGTCACGAACGAGAACTTTGAGTCCAT
CGACATGCCGTCCGAAGAGGCGCTCATCCTATGCGTGGAGGATGCGCTGC
TGAATATGGAGGAGGGATTCTGCCGCATCGCCCGCAAGAAACCCGACCGC
TCCGGCGCCTGCGCCTGCGTGGTGGTGGTGCGCGGCTCGATGTTGTGTGC
GGCCAACGTAGGCGACTGCCAGGCCATCCTCGTTGAACATGACGGCAACG
TGGTGCAGCTCTCGCGGCCGCACCGCGCCACCGACCCGGCCGAGGTGGCG
CGCATCGAAGCCAAGGGCGGGACGGTGATCAACGGGCGTGTCATGGGCGC
GCTGGAGCCGTCGCGCTCCATCGGCGACATCGACCTCAAGAGCGGCCTGG
CGCCCGCCGTCATTCCCACGCCGCACGTCACCACGCGCTCCCTGCCCTAC
AGGCGCGGCCAGGGCCCCAGCGTTCTCGTGGTGGCGTCGGACGGCGTTTG
GGACACGCTCGCGGTGCAGGCCGTTGTGGACATTGTGCGGACCGAGACGG
ACCTGATGGATCCCAAGAAGATGCGGCTGGCGGCGCGCCGGCTCGTGCGG
CGGGCGCGCGAGGCCGGCAGCACCGACGACGTCACGTGCGTCGTCGCCTT
CCTGCGATAG
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