mRNA_P-wetherbeei_contig52231.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig52231.1.1
Unique NamemRNA_P-wetherbeei_contig52231.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig52231.1.1 vs. uniprot
Match: UPI00083A90E3 (sigma-70 family RNA polymerase sigma factor n=1 Tax=Phenylobacterium sp. CCH9-H3 TaxID=1768774 RepID=UPI00083A90E3)

HSP 1 Score: 51.6 bits (122), Expect = 1.670e-6
Identity = 22/41 (53.66%), Postives = 30/41 (73.17%), Query Frame = 1 
Query:   49 DKGLDLLYRRYSGWLTGMLRRRFGASIGDSADDLVQETYVR 171
            +  LD LYR Y+GWL   L RRFG ++ ++A+DLVQE Y+R
Sbjct:   12 EASLDGLYRLYAGWLRRALHRRFGRAVAETAEDLVQEAYLR 52
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BLAST of mRNA_P-wetherbeei_contig52231.1.1 vs. uniprot
Match: UPI0018E2B3F1 (RNA polymerase sigma factor n=2 Tax=Caulobacter hibisci TaxID=2035993 RepID=UPI0018E2B3F1)

HSP 1 Score: 51.2 bits (121), Expect = 2.340e-6
Identity = 23/50 (46.00%), Postives = 34/50 (68.00%), Query Frame = 1 
Query:   22 PIASPQPGEDKGLDLLYRRYSGWLTGMLRRRFGASIGDSADDLVQETYVR 171
            P   P P     LD ++RRY GWL+ MLR+R+GA+   +A+DL Q+T++R
Sbjct:    6 PAFEPSPKLSAALDRVFRRYHGWLSTMLRKRYGAA---AAEDLAQDTFLR 52
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BLAST of mRNA_P-wetherbeei_contig52231.1.1 vs. uniprot
Match: UPI0018F8768E (RNA polymerase sigma factor n=1 Tax=Allosphingosinicella vermicomposti TaxID=614671 RepID=UPI0018F8768E)

HSP 1 Score: 50.8 bits (120), Expect = 3.570e-6
Identity = 29/56 (51.79%), Postives = 36/56 (64.29%), Query Frame = 1 
Query:    7 RTQRRPIASP-QPGEDKGLDLLYRRYSGWLTGMLRRRFGASIGDSADDLVQETYVR 171
            R +R+  A+P QP     +DLLYRRYSGWL  ML  R   +  +  DD+VQETYVR
Sbjct:    4 RDERKARAAPLQPEAVSAVDLLYRRYSGWLNRMLSLRLRTTSVE-VDDIVQETYVR 58
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BLAST of mRNA_P-wetherbeei_contig52231.1.1 vs. uniprot
Match: A0A840A1Y4_9CAUL (RNA polymerase sigma-70 factor (ECF subfamily) n=1 Tax=Phenylobacterium haematophilum TaxID=98513 RepID=A0A840A1Y4_9CAUL)

HSP 1 Score: 50.4 bits (119), Expect = 4.870e-6
Identity = 23/40 (57.50%), Postives = 29/40 (72.50%), Query Frame = 1 
Query:   52 KGLDLLYRRYSGWLTGMLRRRFGASIGDSADDLVQETYVR 171
            + L +LYRRYSGWL  MLRRR+G       +D+VQETY+R
Sbjct:   24 ESLSVLYRRYSGWLKAMLRRRYGID----GEDVVQETYIR 59
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BLAST of mRNA_P-wetherbeei_contig52231.1.1 vs. uniprot
Match: UPI001F5B0045 (RNA polymerase sigma factor n=1 Tax=Sphingobium sp. Sx8-8 TaxID=2933617 RepID=UPI001F5B0045)

HSP 1 Score: 48.1 bits (113), Expect = 2.860e-5
Identity = 22/38 (57.89%), Postives = 29/38 (76.32%), Query Frame = 1 
Query:   58 LDLLYRRYSGWLTGMLRRRFGASIGDSADDLVQETYVR 171
            +D LYR +SGWL GML+RRF A +G   +DLV +TY+R
Sbjct:    2 IDRLYRNHSGWLLGMLQRRF-AGMGLEPEDLVHDTYIR 38
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BLAST of mRNA_P-wetherbeei_contig52231.1.1 vs. uniprot
Match: A0A2W6XCI1_9CAUL (RNA polymerase subunit sigma-70 n=3 Tax=unclassified Brevundimonas TaxID=2622653 RepID=A0A2W6XCI1_9CAUL)

HSP 1 Score: 47.4 bits (111), Expect = 7.700e-5
Identity = 23/41 (56.10%), Postives = 27/41 (65.85%), Query Frame = 1 
Query:   49 DKGLDLLYRRYSGWLTGMLRRRFGASIGDSADDLVQETYVR 171
            D GL  LYR YSGWL G LR+RFG    D  +DL QE ++R
Sbjct:   33 DAGLHDLYRAYSGWLKGRLRKRFG----DETEDLAQEAWLR 69
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig52231.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
UPI00083A90E31.670e-653.66sigma-70 family RNA polymerase sigma factor n=1 Ta... [more]
UPI0018E2B3F12.340e-646.00RNA polymerase sigma factor n=2 Tax=Caulobacter hi... [more]
UPI0018F8768E3.570e-651.79RNA polymerase sigma factor n=1 Tax=Allosphingosin... [more]
A0A840A1Y4_9CAUL4.870e-657.50RNA polymerase sigma-70 factor (ECF subfamily) n=1... [more]
UPI001F5B00452.860e-557.89RNA polymerase sigma factor n=1 Tax=Sphingobium sp... [more]
A0A2W6XCI1_9CAUL7.700e-556.10RNA polymerase subunit sigma-70 n=3 Tax=unclassifi... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig52231contigP-wetherbeei_contig52231:3..173 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog1449049.JONW01000006_gene3137
PFAMsSigma70_r2,Sigma70_r4_2
Model size171
Max annot lvl204458|Caulobacterales
KEGG koko:K03088
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue4.96e-09
EggNOG OGsCOG1595@1|root,COG1595@2|Bacteria,1RFMB@1224|Proteobacteria,2UFCA@28211|Alphaproteobacteria,2KJ3Q@204458|Caulobacterales
DescriptionRNA polymerase sigma factor, sigma-70 family
Cds size171
COG categoryK
BRITEko00000,ko03021
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186783.3477433-CDS-P-wetherbeei_contig52231:2..1731683186783.3477433-CDS-P-wetherbeei_contig52231:2..173Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig52231 3..173 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig52231.1.1prot_P-wetherbeei_contig52231.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig52231 3..173 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig52231.1.1

>prot_P-wetherbeei_contig52231.1.1 ID=prot_P-wetherbeei_contig52231.1.1|Name=mRNA_P-wetherbeei_contig52231.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=57bp
MRRTQRRPIASPQPGEDKGLDLLYRRYSGWLTGMLRRRFGASIGDSADDL
VQETYVR
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mRNA from alignment at P-wetherbeei_contig52231:3..173-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig52231.1.1 ID=mRNA_P-wetherbeei_contig52231.1.1|Name=mRNA_P-wetherbeei_contig52231.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=171bp|location=Sequence derived from alignment at P-wetherbeei_contig52231:3..173- (Phaeothamnion wetherbeei SAG_119_79)
ATGCGGCGAACGCAGCGACGACCGATAGCCTCGCCACAGCCGGGCGAGGA
CAAAGGCCTGGACCTTCTCTATCGCCGCTATTCCGGTTGGCTGACCGGCA
TGCTCCGGCGACGGTTCGGCGCCAGCATCGGCGACAGCGCCGACGACCTG
GTTCAGGAAACCTACGTACGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig52231:3..173-

>mRNA_P-wetherbeei_contig52231.1.1 ID=mRNA_P-wetherbeei_contig52231.1.1|Name=mRNA_P-wetherbeei_contig52231.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=171bp|location=Sequence derived from alignment at P-wetherbeei_contig52231:3..173- (Phaeothamnion wetherbeei SAG_119_79)
ATGCGGCGAACGCAGCGACGACCGATAGCCTCGCCACAGCCGGGCGAGGA
CAAAGGCCTGGACCTTCTCTATCGCCGCTATTCCGGTTGGCTGACCGGCA
TGCTCCGGCGACGGTTCGGCGCCAGCATCGGCGACAGCGCCGACGACCTG
GTTCAGGAAACCTACGTACGG
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