mRNA_P-wetherbeei_contig52201.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig52201.1.1
Unique NamemRNA_P-wetherbeei_contig52201.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig52201.1.1 vs. uniprot
Match: UPI0019C2B914 (Uncharacterized protein n=1 Tax=Prolixibacteraceae bacterium TaxID=2053594 RepID=UPI0019C2B914)

HSP 1 Score: 147 bits (371), Expect = 1.430e-44
Identity = 72/82 (87.80%), Postives = 78/82 (95.12%), Query Frame = 1 
Query:    4 PLDPLRDLAAQIYIELVCRNVVVTEQAAQIKSNPENLARISFKLAETFQKVDGELKAPSLPKNQEFDMKAASLPGWQAGKAE 249
            P DP+RDLAA+IY ELVCRNVVVTE AAQIKSNPENLARISFKLAETFQ+VD ELKAPS+PKNQEFDMKAASLPGW+AGK+E
Sbjct:    9 PADPVRDLAAKIYTELVCRNVVVTESAAQIKSNPENLARISFKLAETFQRVDVELKAPSMPKNQEFDMKAASLPGWEAGKSE 90
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BLAST of mRNA_P-wetherbeei_contig52201.1.1 vs. uniprot
Match: A0A6M4H1F2_9PROT (Uncharacterized protein n=1 Tax=Usitatibacter rugosus TaxID=2732067 RepID=A0A6M4H1F2_9PROT)

HSP 1 Score: 66.6 bits (161), Expect = 1.170e-12
Identity = 34/75 (45.33%), Postives = 51/75 (68.00%), Query Frame = 1 
Query:   10 DP-LRDLAAQIYIELVCRNVVVTEQAAQIKSNPENLARISFKLAETFQKVDGELKAPSLPKNQEFDMKAASLPGW 231
            DP +RDLA  IY +LV + + +T  +A+IKS+P  LAR++FKL+ +F   + EL A +LPKNQ+F +    + GW
Sbjct:    7 DPRVRDLAQNIYRDLVSKALQLTATSAEIKSDPAALARVAFKLSASFFTAEDELNAANLPKNQDFKVGLDDIAGW 81
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BLAST of mRNA_P-wetherbeei_contig52201.1.1 vs. uniprot
Match: A0A536SV20_9PROT (Uncharacterized protein n=2 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A536SV20_9PROT)

HSP 1 Score: 61.2 bits (147), Expect = 1.630e-10
Identity = 30/71 (42.25%), Postives = 48/71 (67.61%), Query Frame = 1 
Query:   22 DLAAQIYIELVCRNVVVTEQAAQIKSNPENLARISFKLAETFQKVDGELKAPSLPKNQEFDMKAASLPGWQ 234
            +LAA IY+ELV R  + T+ AA +K  PE L ++SF+LA  F+KV+   +A + P+N  +D++ + L GW+
Sbjct:   15 ELAAAIYVELVGRAFLRTDNAAVVKPEPEVLVKLSFELAAAFKKVERAYQAAAGPQNVGYDVQLSDLSGWK 85
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BLAST of mRNA_P-wetherbeei_contig52201.1.1 vs. uniprot
Match: A0A521XRK2_9PROT (Uncharacterized protein n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A521XRK2_9PROT)

HSP 1 Score: 55.8 bits (133), Expect = 2.090e-8
Identity = 27/73 (36.99%), Postives = 48/73 (65.75%), Query Frame = 1 
Query:   16 LRDLAAQIYIELVCRNVVVTEQAAQIKSNPENLARISFKLAETFQKVDGELKAPSLPKNQEFDMKAASLPGWQ 234
            +R+LAA+IY+ELV R ++ TEQ    K NP +LA+  +KLAE F+ ++ + +  ++ K  ++D+K   +  W+
Sbjct:   15 VRELAARIYVELVGRVMLTTEQT---KPNPVDLAKFCYKLAEAFRSIEVDAQKDAVAKMAKYDVKVDDMTSWK 84
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BLAST of mRNA_P-wetherbeei_contig52201.1.1 vs. uniprot
Match: A0A1F3XAH3_9PROT (Uncharacterized protein n=3 Tax=unclassified Betaproteobacteria TaxID=33809 RepID=A0A1F3XAH3_9PROT)

HSP 1 Score: 54.3 bits (129), Expect = 8.590e-8
Identity = 28/76 (36.84%), Postives = 44/76 (57.89%), Query Frame = 1 
Query:    4 PLDPLRDLAAQIYIELVCRNVVVTEQAAQIKSNPENLARISFKLAETFQKVDGELKAPSLPKNQEFDMKAASLPGW 231
            P    + L+  IY+EL+ R  + TE AA  K +P  LA++S +LAE F +V+  + A   PKN  +++KA  +  W
Sbjct:    8 PAPSAQTLSELIYVELLGRAFLRTENAASFKPDPAQLAKLSLQLAEVFNQVEKRMLAELGPKNVGYEVKADDIGSW 83
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig52201.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
UPI0019C2B9141.430e-4487.80Uncharacterized protein n=1 Tax=Prolixibacteraceae... [more]
A0A6M4H1F2_9PROT1.170e-1245.33Uncharacterized protein n=1 Tax=Usitatibacter rugo... [more]
A0A536SV20_9PROT1.630e-1042.25Uncharacterized protein n=2 Tax=Betaproteobacteria... [more]
A0A521XRK2_9PROT2.090e-836.99Uncharacterized protein n=1 Tax=Betaproteobacteria... [more]
A0A1F3XAH3_9PROT8.590e-836.84Uncharacterized protein n=3 Tax=unclassified Betap... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig52201contigP-wetherbeei_contig52201:71..322 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size252
Hectar predicted targeting categoryother localisation
Exons1
Cds size252
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186782.9801614-CDS-P-wetherbeei_contig52201:70..3221683186782.9801614-CDS-P-wetherbeei_contig52201:70..322Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig52201 71..322 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig52201.1.1prot_P-wetherbeei_contig52201.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig52201 71..322 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig52201.1.1

>prot_P-wetherbeei_contig52201.1.1 ID=prot_P-wetherbeei_contig52201.1.1|Name=mRNA_P-wetherbeei_contig52201.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=84bp
MPLDPLRDLAAQIYIELVCRNVVVTEQAAQIKSNPENLARISFKLAETFQ
KVDGELKAPSLPKNQEFDMKAASLPGWQAGKAE*
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mRNA from alignment at P-wetherbeei_contig52201:71..322+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig52201.1.1 ID=mRNA_P-wetherbeei_contig52201.1.1|Name=mRNA_P-wetherbeei_contig52201.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=252bp|location=Sequence derived from alignment at P-wetherbeei_contig52201:71..322+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCCCCTGGATCCATTGCGCGATCTGGCCGCCCAGATTTACATCGAACT
GGTCTGCCGTAATGTTGTGGTCACGGAACAAGCGGCACAGATCAAGTCCA
ATCCCGAGAACCTCGCCCGGATCAGCTTCAAGCTGGCCGAAACCTTTCAG
AAGGTGGACGGCGAACTCAAGGCCCCTTCGCTGCCGAAGAACCAGGAATT
CGACATGAAGGCCGCCAGCCTGCCCGGATGGCAGGCGGGCAAGGCGGAGT
AG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig52201:71..322+

>mRNA_P-wetherbeei_contig52201.1.1 ID=mRNA_P-wetherbeei_contig52201.1.1|Name=mRNA_P-wetherbeei_contig52201.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=252bp|location=Sequence derived from alignment at P-wetherbeei_contig52201:71..322+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCCCCTGGATCCATTGCGCGATCTGGCCGCCCAGATTTACATCGAACT
GGTCTGCCGTAATGTTGTGGTCACGGAACAAGCGGCACAGATCAAGTCCA
ATCCCGAGAACCTCGCCCGGATCAGCTTCAAGCTGGCCGAAACCTTTCAG
AAGGTGGACGGCGAACTCAAGGCCCCTTCGCTGCCGAAGAACCAGGAATT
CGACATGAAGGCCGCCAGCCTGCCCGGATGGCAGGCGGGCAAGGCGGAGT
AG
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