mRNA_P-wetherbeei_contig5219.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5219.1.1
Unique NamemRNA_P-wetherbeei_contig5219.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig5219.1.1 vs. uniprot
Match: A0A6H5KX34_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KX34_9PHAE)

HSP 1 Score: 102 bits (254), Expect = 1.890e-20
Identity = 49/92 (53.26%), Postives = 64/92 (69.57%), Query Frame = 3 
Query:  654 MDRHGHHLDRELEENEELRCFARLREWLDAAAKQQRCKLGLHRPITADQARPFQTFFDRPACGGFRTYVAARMHFLVEKVLTRNLLRFHDAQ 929
            MD++GH+L++EL+ NE L  FA L+ WLD    QQRC LGLH PI+A+Q   F TFF RP CGGFR +  A++H +V+KVLT+  L   D Q
Sbjct:    1 MDKYGHNLEQELDTNESLLEFATLKTWLDEVVAQQRCALGLHTPISAEQGSKFSTFFARPECGGFRQHTPAKIHNMVKKVLTKQFLALLDMQ 92
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BLAST of mRNA_P-wetherbeei_contig5219.1.1 vs. uniprot
Match: A0A836C9T3_9STRA (Ankyrin repeat-containing domain protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9T3_9STRA)

HSP 1 Score: 59.7 bits (143), Expect = 3.200e-6
Identity = 23/73 (31.51%), Postives = 42/73 (57.53%), Query Frame = 3 
Query:  720 RLREWLDAAAKQQRCKLGLHRPITADQARPFQTFFDRPACGGFRTYVAARMHFLVEKVLTRNLLRFHDAQQRF 938
            +++ W+    +Q RCKLG+H+P+T  Q RPF +F+  P CGG++ +    +  +++  L+R        Q+ F
Sbjct:   12 KMKAWVQQVMEQMRCKLGVHKPLTPHQVRPFTSFYGGPECGGYKAFTPTAVVKMLKSFLSRQFAVLVSMQEAF 84
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5219.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KX34_9PHAE1.890e-2053.26Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836C9T3_9STRA3.200e-631.51Ankyrin repeat-containing domain protein n=1 Tax=T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5219contigP-wetherbeei_contig5219:1144..2574 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FNU0
PFAMsAnk_2,Ank_3,Ank_4
Model size944
Max annot lvl2759|Eukaryota
KEGG koko:K15503
Hectar predicted targeting categoryother localisation
Exons3
Evalue3.14e-27
EggNOG OGsCOG0666@1|root,KOG4177@2759|Eukaryota
Ec32 ortholog descriptionAnkyrin repeat
Ec32 orthologEc-12_003390.1
Descriptionspectrin binding
Cds size711
COG categoryI
BRITEko00000,ko01009,ko03400
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186782.7259388-UTR-P-wetherbeei_contig5219:1143..13761683186782.7259388-UTR-P-wetherbeei_contig5219:1143..1376Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5219 1144..1376 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186782.7400074-CDS-P-wetherbeei_contig5219:1376..18441683186782.7400074-CDS-P-wetherbeei_contig5219:1376..1844Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5219 1377..1844 +
1683186782.7579374-CDS-P-wetherbeei_contig5219:2036..21351683186782.7579374-CDS-P-wetherbeei_contig5219:2036..2135Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5219 2037..2135 +
1683186782.7679017-CDS-P-wetherbeei_contig5219:2430..25741683186782.7679017-CDS-P-wetherbeei_contig5219:2430..2574Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5219 2431..2574 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5219.1.1prot_P-wetherbeei_contig5219.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5219 1377..2574 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5219.1.1

>prot_P-wetherbeei_contig5219.1.1 ID=prot_P-wetherbeei_contig5219.1.1|Name=mRNA_P-wetherbeei_contig5219.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=237bp
MGAIALPTDPAKVEELFLLALRRWRAYSGPRPAEERIVAIAAVLRQAKKG
DYDASRQAGQEMSDFEAMVIEKWRGLRGYDTAAMQRRFLALVGTVDARLL
RREDFVEVPWHFPTVDEGTGRGPERICPYANSVRGCPHRLMDRHGHHLDR
ELEENEELRCFARLREWLDAAAKQQRCKLGLHRPITADQARPFQTFFDRP
ACGGFRTYVAARMHFLVEKVLTRNLLRFHDAQQRFAA
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mRNA from alignment at P-wetherbeei_contig5219:1144..2574+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5219.1.1 ID=mRNA_P-wetherbeei_contig5219.1.1|Name=mRNA_P-wetherbeei_contig5219.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1431bp|location=Sequence derived from alignment at P-wetherbeei_contig5219:1144..2574+ (Phaeothamnion wetherbeei SAG_119_79)
AAGTGGGGAAGCCATCCTCCATTCTCATGTTGGGAAGTAGTTTTAACGAT
AGCTAACGTTTGATTCGAGGCGTCTCGGCGGGTGCGGTCTCAGATCTGTC
TAAAATCCATACACGCAACATTTGACCACGCGCTTTTCCTTCCCCCTTCC
AAAAGAGACCCTGGTCCTCTGAGAACTCCCAAGTGTATGCAGCGAATGCG
GATTGCTTGACAATAGTTTAACATATCGAAGGAATGGGAGCAATCGCGCT
GCCGACCGATCCAGCAAAGGTGGAGGAGCTCTTTCTTCTCGCACTGCGAC
GATGGCGCGCTTATTCCGGCCCCAGGCCGGCCGAGGAACGGATTGTCGCG
ATCGCCGCAGTCTTGCGGCAAGCTAAGAAGGGCGACTACGATGCCAGCAG
ACAAGCCGGCCAAGAGATGTCAGACTTCGAAGCCATGGTGATCGAAAAAT
GGCGTGGATTGCGAGGCTACGACACCGCGGCCATGCAGCGCCGCTTCCTC
GCGCTTGTGGGCACCGTTGACGCGAGGCTGCTTCGACGCGAAGACTTTGT
GGAGGTTCCGTGGCACTTTCCGACCGTCGACGAGGGAACTGGCCGTGGAC
CCGAACGTATCTGCCCTTACGCCAACTCCGTCCGCGGGTGTCCCCATCGG
CTGATGGATCGCCACGGCCACCATCTCGATCGAGAGCTCGAGGAAAACGA
GGTGAGAAGAAGGGGATTCGGGACAGCGAAGTTTTGGCAATGCGCTTAGC
GGTATTTTTCAGGAGGCACCAGCCGGCAGGAGCTGACTTAATCCGATTTC
TTCCAGAAAAGTGTGTAAAAAGACGGTGGCGCAAAAGGACACATTGTTCA
CCGCTCTTTGGCTGCTGCCTCTCTCCCCTCTATTGATACGCAGGAGCTGC
GCTGCTTTGCACGGCTGCGGGAGTGGCTGGATGCGGCGGCGAAGCAGCAG
CGCTGCAAGCTAGGCCTGCACCGGCCCATCACCGCCGACCAGGCACGTCT
GTCCCGAGACCAAATCACTCCATCTGTGAAAGCAGAACCGTAAAAGATTC
CTTTACGGTCATCTAAATGCATGTGTCCTTTCTCTCCCCCCACATCTTCG
CTTCCCTACTTCTAGCATCGAGCTGTAAATTTTCCGTGCGCGTCTAGGGA
TTAATTTAAGTTACTCTATAATGGCACGGTTCACGCGCTGCTAAAGCGCA
AGGCATTACGGAATCAGCTAATAGTTTCGCTGTCGCCCACTGCATCCTCC
CGCACGCCTCATACTCTCTCTGAAAATCGAATTCCAGGCGCGGCCCTTCC
AGACGTTTTTCGACCGCCCGGCCTGCGGCGGCTTCCGCACGTACGTCGCC
GCGCGCATGCACTTCCTTGTCGAAAAAGTGCTGACGCGCAACCTGCTTCG
GTTTCATGATGCCCAGCAGCGCTTCGCCGCC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5219:1144..2574+

>mRNA_P-wetherbeei_contig5219.1.1 ID=mRNA_P-wetherbeei_contig5219.1.1|Name=mRNA_P-wetherbeei_contig5219.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=711bp|location=Sequence derived from alignment at P-wetherbeei_contig5219:1144..2574+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGGAGCAATCGCGCTGCCGACCGATCCAGCAAAGGTGGAGGAGCTCTT
TCTTCTCGCACTGCGACGATGGCGCGCTTATTCCGGCCCCAGGCCGGCCG
AGGAACGGATTGTCGCGATCGCCGCAGTCTTGCGGCAAGCTAAGAAGGGC
GACTACGATGCCAGCAGACAAGCCGGCCAAGAGATGTCAGACTTCGAAGC
CATGGTGATCGAAAAATGGCGTGGATTGCGAGGCTACGACACCGCGGCCA
TGCAGCGCCGCTTCCTCGCGCTTGTGGGCACCGTTGACGCGAGGCTGCTT
CGACGCGAAGACTTTGTGGAGGTTCCGTGGCACTTTCCGACCGTCGACGA
GGGAACTGGCCGTGGACCCGAACGTATCTGCCCTTACGCCAACTCCGTCC
GCGGGTGTCCCCATCGGCTGATGGATCGCCACGGCCACCATCTCGATCGA
GAGCTCGAGGAAAACGAGGAGCTGCGCTGCTTTGCACGGCTGCGGGAGTG
GCTGGATGCGGCGGCGAAGCAGCAGCGCTGCAAGCTAGGCCTGCACCGGC
CCATCACCGCCGACCAGGCGCGGCCCTTCCAGACGTTTTTCGACCGCCCG
GCCTGCGGCGGCTTCCGCACGTACGTCGCCGCGCGCATGCACTTCCTTGT
CGAAAAAGTGCTGACGCGCAACCTGCTTCGGTTTCATGATGCCCAGCAGC
GCTTCGCCGCC
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