mRNA_P-wetherbeei_contig5218.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5218.1.1
Unique NamemRNA_P-wetherbeei_contig5218.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig5218.1.1 vs. uniprot
Match: A0A836CC35_9STRA (Formyl transferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CC35_9STRA)

HSP 1 Score: 54.7 bits (130), Expect = 7.420e-6
Identity = 23/28 (82.14%), Postives = 25/28 (89.29%), Query Frame = 2 
Query:    2 EMFGIPFKHLPIPAKTDGGKRVQELQIE 85
            +MFGIPF+HLPIP K DGGKR QELQIE
Sbjct:   92 DMFGIPFRHLPIPPKADGGKRAQELQIE 119
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BLAST of mRNA_P-wetherbeei_contig5218.1.1 vs. uniprot
Match: D8LH40_ECTSI (ACT domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH40_ECTSI)

HSP 1 Score: 53.9 bits (128), Expect = 1.920e-5
Identity = 22/30 (73.33%), Postives = 26/30 (86.67%), Query Frame = 2 
Query:    2 EMFGIPFKHLPIPAKTDGGKRVQELQIEEV 91
            +MFG+PF HLPIP K  GGKRVQE+QIEE+
Sbjct:  183 DMFGVPFVHLPIPPKDQGGKRVQEIQIEEI 212
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5218.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A836CC35_9STRA7.420e-682.14Formyl transferase n=1 Tax=Tribonema minus TaxID=3... [more]
D8LH40_ECTSI1.920e-573.33ACT domain-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5218contigP-wetherbeei_contig5218:145..646 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LH40
PFAMsACT,Formyl_trans_N
Model size502
Max annot lvl2759|Eukaryota
KEGG rclassRC00026,RC00111
KEGG koko:K01433
KEGG ReactionR00944
KEGG Pathwayko00630,ko00670,map00630,map00670
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0006082,GO:0006575,GO:0006725,GO:0006732,GO:0006760,GO:0006807,GO:0008150,GO:0008152,GO:0009853,GO:0009987,GO:0019752,GO:0034641,GO:0042558,GO:0043094,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0043603,GO:0044237,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0046653,GO:0051186,GO:0071704,GO:1901360,GO:1901564
Exons1
Evalue3.39e-06
EggNOG OGsCOG0299@1|root,KOG3076@2759|Eukaryota
EC3.5.1.10
Descriptionphosphoribosylglycinamide formyltransferase activity
Cds size399
COG categoryF
BRITEko00000,ko00001,ko01000
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186782.5615692-UTR-P-wetherbeei_contig5218:144..2431683186782.5615692-UTR-P-wetherbeei_contig5218:144..243Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5218 145..243 -
1683186782.597662-UTR-P-wetherbeei_contig5218:642..6461683186782.597662-UTR-P-wetherbeei_contig5218:642..646Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5218 643..646 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186782.583961-CDS-P-wetherbeei_contig5218:243..6421683186782.583961-CDS-P-wetherbeei_contig5218:243..642Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5218 244..642 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5218.1.1prot_P-wetherbeei_contig5218.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5218 244..642 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5218.1.1

>prot_P-wetherbeei_contig5218.1.1 ID=prot_P-wetherbeei_contig5218.1.1|Name=mRNA_P-wetherbeei_contig5218.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=133bp
MFGIPFKHLPIPAKTDGGKRVQELQIEEVRTERPASFVFHRALDAVSAFR
HRRRLIPPPAAGALPPPVAWRRHQLAGLHTLPCRCRPPLPMLLVHRSLLL
LRRSFTIATARRWRWLVPSTALSPFLLRCRRA*
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mRNA from alignment at P-wetherbeei_contig5218:145..646-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5218.1.1 ID=mRNA_P-wetherbeei_contig5218.1.1|Name=mRNA_P-wetherbeei_contig5218.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=502bp|location=Sequence derived from alignment at P-wetherbeei_contig5218:145..646- (Phaeothamnion wetherbeei SAG_119_79)
GGAGATGTTTGGGATCCCATTCAAGCACCTTCCCATCCCGGCGAAGACCG
ATGGCGGAAAGCGCGTCCAGGAGCTCCAGATTGAGGAAGTGAGGACCGAG
CGTCCGGCTTCCTTTGTTTTTCACCGAGCTTTGGATGCGGTTTCCGCCTT
TCGTCACCGCCGCCGTTTGATACCGCCGCCCGCAGCCGGTGCGCTTCCAC
CGCCAGTTGCGTGGCGCCGCCACCAGCTGGCCGGCCTCCACACTCTACCG
TGTCGCTGCCGGCCACCGTTGCCGATGTTGCTGGTGCACCGGTCCTTGTT
GCTGTTGCGTCGGTCCTTTACCATTGCCACCGCACGTCGCTGGCGCTGGC
TGGTGCCATCGACGGCCCTGTCGCCCTTCTTACTTCGTTGCCGCCGCGCT
TAAGAACAGTGTTGCCAGACCGCGCTACCGGTTTCCTGCACCCGTGTCTT
ACCGACGGTCCTTCCAATCCCCGTTCGGCGCTCCGACAGCACATGCGTGA
GG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5218:145..646-

>mRNA_P-wetherbeei_contig5218.1.1 ID=mRNA_P-wetherbeei_contig5218.1.1|Name=mRNA_P-wetherbeei_contig5218.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=399bp|location=Sequence derived from alignment at P-wetherbeei_contig5218:145..646- (Phaeothamnion wetherbeei SAG_119_79)
ATGTTTGGGATCCCATTCAAGCACCTTCCCATCCCGGCGAAGACCGATGG
CGGAAAGCGCGTCCAGGAGCTCCAGATTGAGGAAGTGAGGACCGAGCGTC
CGGCTTCCTTTGTTTTTCACCGAGCTTTGGATGCGGTTTCCGCCTTTCGT
CACCGCCGCCGTTTGATACCGCCGCCCGCAGCCGGTGCGCTTCCACCGCC
AGTTGCGTGGCGCCGCCACCAGCTGGCCGGCCTCCACACTCTACCGTGTC
GCTGCCGGCCACCGTTGCCGATGTTGCTGGTGCACCGGTCCTTGTTGCTG
TTGCGTCGGTCCTTTACCATTGCCACCGCACGTCGCTGGCGCTGGCTGGT
GCCATCGACGGCCCTGTCGCCCTTCTTACTTCGTTGCCGCCGCGCTTAA
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