mRNA_P-wetherbeei_contig52163.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig52163.1.1
Unique NamemRNA_P-wetherbeei_contig52163.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig52163.1.1 vs. uniprot
Match: A0A835YP24_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YP24_9STRA)

HSP 1 Score: 76.6 bits (187), Expect = 6.350e-16
Identity = 37/86 (43.02%), Postives = 51/86 (59.30%), Query Frame = 1
Query:   31 GFVGGTVGVIGTILSIEAKKQKVKERVSCPYCQGSGNIVCGSCCGSGTLSIRNVVSGAQITMXXXXXXXXXXXXXXXXXXDGRSVP 288
            G +GG+VGVIGT+L IE KK  V++   C YC+GSG++VCG C G+G L++ N V+   I++                  DGRSVP
Sbjct:   20 GILGGSVGVIGTLLGIEWKKYNVRQASECCYCRGSGHLVCGQCLGTGELTLVNAVTNKSISLGCPTCSGMTYITCINCKGDGRSVP 105          
BLAST of mRNA_P-wetherbeei_contig52163.1.1 vs. uniprot
Match: A0A0M0JEK3_9EUKA (Cysteine-rich domain-containing protein n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JEK3_9EUKA)

HSP 1 Score: 75.1 bits (183), Expect = 1.960e-14
Identity = 31/53 (58.49%), Postives = 44/53 (83.02%), Query Frame = 1
Query:   25 LNGFVGGTVGVIGTILSIEAKKQKVKERVSCPYCQGSGNIVCGSCCGSGTLSI 183
            +NGF+GG+VGV+GT++S   KK++VK+R+ C YC+GSG I+CG C  SGTLS+
Sbjct:   92 VNGFIGGSVGVVGTVVSTMLKKKEVKDRLKCSYCEGSGQILCGHCLXSGTLSV 144          
BLAST of mRNA_P-wetherbeei_contig52163.1.1 vs. uniprot
Match: A0A7S2BTZ5_9EUKA (Hypothetical protein n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2BTZ5_9EUKA)

HSP 1 Score: 72.8 bits (177), Expect = 2.000e-13
Identity = 33/63 (52.38%), Postives = 43/63 (68.25%), Query Frame = 1
Query:   25 LNGFVGGTVGVIGTILSIEAKKQKVKERVSCPYCQGSGNIVCGSCCGSGTLSIRNVVSGAQIT 213
            +NGF+GG+VGVIGT++S   KK +VK+R+ C YC G+G I+CG C G GTL  R      Q T
Sbjct:  100 VNGFIGGSVGVIGTLISTVIKKDEVKDRLKCTYCDGTGQIMCGHCFGPGTLLTRAADGSMQST 162          
BLAST of mRNA_P-wetherbeei_contig52163.1.1 vs. uniprot
Match: A0A7S2SCF0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SCF0_9STRA)

HSP 1 Score: 70.5 bits (171), Expect = 5.450e-13
Identity = 28/49 (57.14%), Postives = 41/49 (83.67%), Query Frame = 1
Query:   31 GFVGGTVGVIGTILSIEAKKQKVKERVSCPYCQGSGNIVCGSCCGSGTL 177
            GF+GGTVGV+GT+++ E K+ K+K+R+ CPYC+G G I CG+C GSG++
Sbjct:  130 GFLGGTVGVLGTLITYETKRFKMKQRILCPYCEGGGVITCGACLGSGSV 178          
BLAST of mRNA_P-wetherbeei_contig52163.1.1 vs. uniprot
Match: A0A835YW14_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YW14_9STRA)

HSP 1 Score: 69.3 bits (168), Expect = 2.410e-12
Identity = 50/90 (55.56%), Postives = 62/90 (68.89%), Query Frame = 1
Query:   25 LNGFVGGTVGVIGTILSIEAKKQKVKERVSCPYCQGSGNIVCGSCCGSGTLSIRNVVSGAQ--ITMXXXXXXXXXXXXXXXXXXDGRSVP 288
            ++GF GGTVGV+GT++ +E KKQ V +R  CPYCQG+G + C  C G G L  R    GA   +++    XXXXXXXXXXXXXXDG SVP
Sbjct:   83 MSGFAGGTVGVMGTLIGLELKKQNVVKRSVCPYCQGAGTLTCARCYGVGILLARRRSDGAAAPLSVPCGCXXXXXXXXXXXXXXDGASVP 172          
BLAST of mRNA_P-wetherbeei_contig52163.1.1 vs. uniprot
Match: D8LRQ7_ECTSI (DnaJ Cysteine-Rich Domain-Containing Protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LRQ7_ECTSI)

HSP 1 Score: 69.3 bits (168), Expect = 3.510e-12
Identity = 32/86 (37.21%), Postives = 48/86 (55.81%), Query Frame = 1
Query:   31 GFVGGTVGVIGTILSIEAKKQKVKERVSCPYCQGSGNIVCGSCCGSGTLSIRNVVSGAQITMXXXXXXXXXXXXXXXXXXDGRSVP 288
            G  GG+VGV+GT++ +E K++K+K R +CPYC GSG +VC  C  +GT +++   S    T+                  DGR+VP
Sbjct:  123 GVAGGSVGVLGTLIQLELKQEKLKTRRNCPYCDGSGKLVCAVCFSAGTFTVKLPGSDTYSTLPCPGCAGNKYITCLNCRGDGRAVP 208          
BLAST of mRNA_P-wetherbeei_contig52163.1.1 vs. uniprot
Match: A0A7S3EVL4_9EUKA (Hypothetical protein n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3EVL4_9EUKA)

HSP 1 Score: 69.3 bits (168), Expect = 3.830e-12
Identity = 30/59 (50.85%), Postives = 43/59 (72.88%), Query Frame = 1
Query:   25 LNGFVGGTVGVIGTILSIEAKKQKVKERVSCPYCQGSGNIVCGSCCGSGTLSIRNVVSG 201
            +NGF+GG+VGV+GT+L+   KK +VK+R+ C YC G+G I CG C G  TLS+ +  +G
Sbjct:   89 INGFIGGSVGVMGTVLATVVKKGQVKDRLKCSYCDGTGQIGCGHCLGLATLSMMDADTG 147          
BLAST of mRNA_P-wetherbeei_contig52163.1.1 vs. uniprot
Match: A0A7S4IFN7_9EUKA (Hypothetical protein n=1 Tax=Prymnesium polylepis TaxID=72548 RepID=A0A7S4IFN7_9EUKA)

HSP 1 Score: 67.0 bits (162), Expect = 8.040e-12
Identity = 29/56 (51.79%), Postives = 40/56 (71.43%), Query Frame = 1
Query:   22 RLNGFVGGTVGVIGTILSIEAKKQKVKERVSCPYCQGSGNIVCGSCCGSGTLSIRN 189
            R +GF+GG+VGV+GT+++   KK +VKER+ C YC G+G IVCG C   GT+   N
Sbjct:    2 RASGFIGGSVGVVGTVVATLIKKSQVKERLKCTYCNGTGEIVCGVCLRRGTVQSLN 57          
BLAST of mRNA_P-wetherbeei_contig52163.1.1 vs. uniprot
Match: A0A7S4MKC5_9EUKA (Hypothetical protein n=1 Tax=Prymnesium polylepis TaxID=72548 RepID=A0A7S4MKC5_9EUKA)

HSP 1 Score: 67.8 bits (164), Expect = 1.190e-11
Identity = 29/55 (52.73%), Postives = 40/55 (72.73%), Query Frame = 1
Query:   25 LNGFVGGTVGVIGTILSIEAKKQKVKERVSCPYCQGSGNIVCGSCCGSGTLSIRN 189
            +NGF+GG+VGV+GT+++   KK +VKER+ C YC G+G IVCG C   GT+   N
Sbjct:   67 VNGFIGGSVGVVGTVVATLIKKSQVKERLKCTYCNGTGEIVCGVCLRRGTVQSLN 121          
BLAST of mRNA_P-wetherbeei_contig52163.1.1 vs. uniprot
Match: A0A6V1KEG1_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1KEG1_HETAK)

HSP 1 Score: 64.7 bits (156), Expect = 8.240e-11
Identity = 27/54 (50.00%), Postives = 37/54 (68.52%), Query Frame = 1
Query:   16 RVRLNGFVGGTVGVIGTILSIEAKKQKVKERVSCPYCQGSGNIVCGSCCGSGTL 177
            R  + GFVGG +GV GT++++++KK KV ER  CPYC G G + C  C G+G L
Sbjct:   69 RDTVTGFVGGAIGVTGTLIALDSKKVKVAERAKCPYCTGDGRLTCVRCLGAGML 122          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig52163.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 24
Match NameE-valueIdentityDescription
A0A835YP24_9STRA6.350e-1643.02Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A0M0JEK3_9EUKA1.960e-1458.49Cysteine-rich domain-containing protein n=1 Tax=Ch... [more]
A0A7S2BTZ5_9EUKA2.000e-1352.38Hypothetical protein n=1 Tax=Haptolina brevifila T... [more]
A0A7S2SCF0_9STRA5.450e-1357.14Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A835YW14_9STRA2.410e-1255.56Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
D8LRQ7_ECTSI3.510e-1237.21DnaJ Cysteine-Rich Domain-Containing Protein n=2 T... [more]
A0A7S3EVL4_9EUKA3.830e-1250.85Hypothetical protein n=1 Tax=Haptolina ericina Tax... [more]
A0A7S4IFN7_9EUKA8.040e-1251.79Hypothetical protein n=1 Tax=Prymnesium polylepis ... [more]
A0A7S4MKC5_9EUKA1.190e-1152.73Hypothetical protein n=1 Tax=Prymnesium polylepis ... [more]
A0A6V1KEG1_HETAK8.240e-1150.00Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig52163contigP-wetherbeei_contig52163:214..504 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog4006.Lus10021316
Model size291
Max annot lvl35493|Streptophyta
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0008150,GO:0009507,GO:0009526,GO:0009536,GO:0009889,GO:0009891,GO:0009893,GO:0009941,GO:0016020,GO:0019216,GO:0019222,GO:0019747,GO:0031090,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031647,GO:0031967,GO:0031969,GO:0031975,GO:0042170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0045828,GO:0045834,GO:0046889,GO:0046890,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0050821,GO:0065007,GO:0065008,GO:0080090,GO:1904143
Exons1
Evalue4.89e-06
EggNOG OGs28NS1@1|root,2QSP0@2759|Eukaryota,37HRX@33090|Viridiplantae,3GEYX@35493|Streptophyta,4JGI4@91835|fabids
Descriptionchaperone protein
Cds size291
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186782.427089-CDS-P-wetherbeei_contig52163:213..5041683186782.427089-CDS-P-wetherbeei_contig52163:213..504Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig52163 214..504 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig52163.1.1prot_P-wetherbeei_contig52163.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig52163 214..504 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig52163.1.1

>prot_P-wetherbeei_contig52163.1.1 ID=prot_P-wetherbeei_contig52163.1.1|Name=mRNA_P-wetherbeei_contig52163.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=97bp
MHCVRRVRLNGFVGGTVGVIGTILSIEAKKQKVKERVSCPYCQGSGNIVC
GSCCGSGTLSIRNVVSGAQITMSCPVCSGRTCIVCAICHGDGRSVPF
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mRNA from alignment at P-wetherbeei_contig52163:214..504+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig52163.1.1 ID=mRNA_P-wetherbeei_contig52163.1.1|Name=mRNA_P-wetherbeei_contig52163.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=291bp|location=Sequence derived from alignment at P-wetherbeei_contig52163:214..504+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCACTGCGTGCGCCGCGTCAGGCTAAATGGCTTTGTCGGTGGGACTGT GGGCGTCATCGGCACTATATTGTCCATCGAGGCCAAGAAGCAGAAGGTCA AGGAGCGCGTCAGCTGCCCGTACTGCCAAGGGAGCGGAAACATCGTCTGC GGATCCTGTTGCGGCTCGGGGACGCTGTCGATCCGAAACGTCGTCTCCGG CGCCCAGATTACGATGAGCTGCCCTGTCTGCAGTGGCAGGACATGCATCG TGTGCGCAATTTGCCATGGCGACGGAAGGAGCGTGCCTTTC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig52163:214..504+

>mRNA_P-wetherbeei_contig52163.1.1 ID=mRNA_P-wetherbeei_contig52163.1.1|Name=mRNA_P-wetherbeei_contig52163.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=291bp|location=Sequence derived from alignment at P-wetherbeei_contig52163:214..504+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCACTGCGTGCGCCGCGTCAGGCTAAATGGCTTTGTCGGTGGGACTGT
GGGCGTCATCGGCACTATATTGTCCATCGAGGCCAAGAAGCAGAAGGTCA
AGGAGCGCGTCAGCTGCCCGTACTGCCAAGGGAGCGGAAACATCGTCTGC
GGATCCTGTTGCGGCTCGGGGACGCTGTCGATCCGAAACGTCGTCTCCGG
CGCCCAGATTACGATGAGCTGCCCTGTCTGCAGTGGCAGGACATGCATCG
TGTGCGCAATTTGCCATGGCGACGGAAGGAGCGTGCCTTTC
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