mRNA_P-wetherbeei_contig52160.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
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Overview
Homology
BLAST of mRNA_P-wetherbeei_contig52160.1.1 vs. uniprot
Match: A0A6L6AQA0_9ACTN (GAF domain-containing protein n=5 Tax=root TaxID=1 RepID=A0A6L6AQA0_9ACTN) HSP 1 Score: 303 bits (775), Expect = 8.920e-100 Identity = 154/156 (98.72%), Postives = 155/156 (99.36%), Query Frame = 1
Query: 79 MGDDVGSSHRARDRALTDDTATAARPEISASWRRVRAGGLAPGAEPEVAPLSEAEVVSRRSTSTLAPLLPSITASLEPVVDDGLLMVVTDSDGRVLWRRGRTGVRRLADRLGFVSGSAWTEANVGTNAIGTCLVLGEPVHIRGPEHYVESHTRWSC 546
MGDDV SSHRARDRALT+DTATAARPEISASWRRVRAGGLAPGAEPEVAPLSEAEVVSRRSTSTLAPLLPSITASLEPVVDDGLLMVVTDSDGRVLWRRGRTGVRRLADRLGFVSGSAWTEANVGTNAIGTCLVLGEPVHIRGPEHYVESHTRWSC
Sbjct: 1 MGDDVRSSHRARDRALTNDTATAARPEISASWRRVRAGGLAPGAEPEVAPLSEAEVVSRRSTSTLAPLLPSITASLEPVVDDGLLMVVTDSDGRVLWRRGRTGVRRLADRLGFVSGSAWTEANVGTNAIGTCLVLGEPVHIRGPEHYVESHTRWSC 156
BLAST of mRNA_P-wetherbeei_contig52160.1.1 vs. uniprot
Match: A0A4Q2RQ87_9ACTN (GAF domain-containing protein n=2 Tax=Nocardioides glacieisoli TaxID=1168730 RepID=A0A4Q2RQ87_9ACTN) HSP 1 Score: 270 bits (689), Expect = 2.000e-86 Identity = 139/182 (76.37%), Postives = 151/182 (82.97%), Query Frame = 1
Query: 1 HDTPGRRIGGRVAGGCNAGEARPGGTMGDDVGSSHRARDRALTDDTATAARPEISASWRRVRAGGLAPGAEPEVAPLSEAEVVSRRSTSTLAPLLPSITASLEPVVDDGLLMVVTDSDGRVLWRRGRTGVRRLADRLGFVSGSAWTEANVGTNAIGTCLVLGEPVHIRGPEHYVESHTRWSC 546
HDTP RIGGRVA GC R G MG D ++ RD+AL AARPEISASWRRVRAGGLAPGAEP VAPLSEAE+ +RR++S LAPL+PSITASLEPVVDDGLL+V+TD DGRVLW+RGR GVRRLAD LGFV GSAWTE NVGTNAIGTCLV+GEPVHIRGPEHYVESHTRWSC
Sbjct: 13 HDTPASRIGGRVARGCK----RTGVDMGADARAARPTRDQALAGRPDAAARPEISASWRRVRAGGLAPGAEPAVAPLSEAEIATRRTSSALAPLMPSITASLEPVVDDGLLLVLTDVDGRVLWQRGRAGVRRLADTLGFVPGSAWTEVNVGTNAIGTCLVVGEPVHIRGPEHYVESHTRWSC 190
BLAST of mRNA_P-wetherbeei_contig52160.1.1 vs. uniprot
Match: A0A4V1RPY0_9ACTN (GAF domain-containing protein n=2 Tax=Nocardioides zhouii TaxID=1168729 RepID=A0A4V1RPY0_9ACTN) HSP 1 Score: 265 bits (677), Expect = 3.840e-85 Identity = 134/157 (85.35%), Postives = 147/157 (93.63%), Query Frame = 1
Query: 79 MGDDVGSSHRARDRALT-DDTATAARPEISASWRRVRAGGLAPGAEPEVAPLSEAEVVSRRSTSTLAPLLPSITASLEPVVDDGLLMVVTDSDGRVLWRRGRTGVRRLADRLGFVSGSAWTEANVGTNAIGTCLVLGEPVHIRGPEHYVESHTRWSC 546
MG+DV ++ AR++AL D+ATAARPEISASWRRVRAGGLAPGAEPEVAPLSE E+ SRR+ S LAPLLPSITASLEPVVDDGLL+VVTD+DGRVLW+RGRTGVRRLADRLGFV+GSAWTEANVGTNAIGTCLV+GEPVHIRGPEHYVESHTRWSC
Sbjct: 1 MGEDVRTARLAREQALGGSDSATAARPEISASWRRVRAGGLAPGAEPEVAPLSEVEIESRRTASELAPLLPSITASLEPVVDDGLLLVVTDTDGRVLWQRGRTGVRRLADRLGFVAGSAWTEANVGTNAIGTCLVVGEPVHIRGPEHYVESHTRWSC 157
BLAST of mRNA_P-wetherbeei_contig52160.1.1 vs. uniprot
Match: A0A1I1B269_9ACTN (GAF domain-containing protein n=1 Tax=Nocardioides alpinus TaxID=748909 RepID=A0A1I1B269_9ACTN) HSP 1 Score: 265 bits (676), Expect = 5.270e-85 Identity = 133/156 (85.26%), Postives = 142/156 (91.03%), Query Frame = 1
Query: 79 MGDDVGSSHRARDRALTDDTATAARPEISASWRRVRAGGLAPGAEPEVAPLSEAEVVSRRSTSTLAPLLPSITASLEPVVDDGLLMVVTDSDGRVLWRRGRTGVRRLADRLGFVSGSAWTEANVGTNAIGTCLVLGEPVHIRGPEHYVESHTRWSC 546
MG+DV +SHRAR+RAL + PEISASWRRVRAGGLAPGAEPEVAPLSE EV SRR++S LAPLL SITASLEPVVDDGLL+VVTD+DGRVLWRRGRTGVRRLADRLGFV GSAWTEANVGTNAIGTCLV+GEPVHIRGPEHYVESHTRWSC
Sbjct: 1 MGEDVRTSHRARERALATGIPVESSPEISASWRRVRAGGLAPGAEPEVAPLSEVEVESRRTSSALAPLLASITASLEPVVDDGLLLVVTDTDGRVLWRRGRTGVRRLADRLGFVPGSAWTEANVGTNAIGTCLVVGEPVHIRGPEHYVESHTRWSC 156
BLAST of mRNA_P-wetherbeei_contig52160.1.1 vs. uniprot
Match: UPI000D30759D (GAF domain-containing protein n=1 Tax=Nocardioides sediminis TaxID=433648 RepID=UPI000D30759D) HSP 1 Score: 246 bits (629), Expect = 7.500e-78 Identity = 129/161 (80.12%), Postives = 139/161 (86.34%), Query Frame = 1
Query: 79 MGDDVGSSHRA----RDRALTDD-TATAARPEISASWRRVRAGGLAPGAEPEVAPLSEAEVVSRRSTSTLAPLLPSITASLEPVVDDGLLMVVTDSDGRVLWRRGRTGVRRLADRLGFVSGSAWTEANVGTNAIGTCLVLGEPVHIRGPEHYVESHTRWSC 546
MG D G RA R+RAL+ TA AARPEISASWRRVRAGGLAPGAEP V PLSE EV +RR++S LAPLLPSIT SL PVVDDGLL+VVTD+DGRVLWRRGR+GV+RLADRLGFV GSAWTEANVGTNAIGTCLV+GEPVHI GPEHYVESHTRWSC
Sbjct: 1 MGRDEGQHERAARLTRERALSGTGTAEAARPEISASWRRVRAGGLAPGAEPAVPPLSEGEVEARRASSALAPLLPSITTSLSPVVDDGLLVVVTDTDGRVLWRRGRSGVQRLADRLGFVRGSAWTEANVGTNAIGTCLVVGEPVHIHGPEHYVESHTRWSC 161
BLAST of mRNA_P-wetherbeei_contig52160.1.1 vs. uniprot
Match: A0A0Q9Q9D2_9ACTN (GAF domain-containing protein n=2 Tax=Nocardioides TaxID=1839 RepID=A0A0Q9Q9D2_9ACTN) HSP 1 Score: 246 bits (628), Expect = 1.060e-77 Identity = 128/161 (79.50%), Postives = 138/161 (85.71%), Query Frame = 1
Query: 79 MGDDVGSSHRA----RDRALTDDTATA-ARPEISASWRRVRAGGLAPGAEPEVAPLSEAEVVSRRSTSTLAPLLPSITASLEPVVDDGLLMVVTDSDGRVLWRRGRTGVRRLADRLGFVSGSAWTEANVGTNAIGTCLVLGEPVHIRGPEHYVESHTRWSC 546
MG+D RA R+R L+ AT ARPEISASWRRVRAGGLAPGAEP VAPL+E EV SRR++S L+PLLPSITASL PVVDDGLL+VVTD+DGRVLWRRGR GVRRLADRLGFV GSAWTEANVGTNAIGTCLV+GEPVHI GPEHYVESHTRWSC
Sbjct: 1 MGEDRRQGERAARLTRERVLSGGAATGVARPEISASWRRVRAGGLAPGAEPAVAPLTEGEVESRRASSALSPLLPSITASLSPVVDDGLLVVVTDTDGRVLWRRGRAGVRRLADRLGFVQGSAWTEANVGTNAIGTCLVVGEPVHIHGPEHYVESHTRWSC 161
BLAST of mRNA_P-wetherbeei_contig52160.1.1 vs. uniprot
Match: A0A0Q9T466_9ACTN (GAF domain-containing protein n=1 Tax=Nocardioides sp. Soil805 TaxID=1736416 RepID=A0A0Q9T466_9ACTN) HSP 1 Score: 242 bits (618), Expect = 2.880e-76 Identity = 122/146 (83.56%), Postives = 130/146 (89.04%), Query Frame = 1
Query: 112 RDRALTDDTATA-ARPEISASWRRVRAGGLAPGAEPEVAPLSEAEVVSRRSTSTLAPLLPSITASLEPVVDDGLLMVVTDSDGRVLWRRGRTGVRRLADRLGFVSGSAWTEANVGTNAIGTCLVLGEPVHIRGPEHYVESHTRWSC 546
RDR L+ ARPEISASWRRVRAGGLAPGAEP VAPLSE EV SRR++S L PLLPSIT+SL PVVDDGLL+VVTD+DGRVLWRRGR+GVRRLADRLGFV GSAWTEANVGTNAIGTCLV+GEPVHI GPEHYVESHTRWSC
Sbjct: 16 RDRVLSGGAPVEEARPEISASWRRVRAGGLAPGAEPAVAPLSEGEVESRRASSALGPLLPSITSSLSPVVDDGLLVVVTDTDGRVLWRRGRSGVRRLADRLGFVQGSAWTEANVGTNAIGTCLVVGEPVHIHGPEHYVESHTRWSC 161
BLAST of mRNA_P-wetherbeei_contig52160.1.1 vs. uniprot
Match: A0A2R7YUW1_9ACTN (Diguanylate cyclase n=1 Tax=Nocardioides currus TaxID=2133958 RepID=A0A2R7YUW1_9ACTN) HSP 1 Score: 236 bits (603), Expect = 8.830e-74 Identity = 119/148 (80.41%), Postives = 133/148 (89.86%), Query Frame = 1
Query: 106 RARDRALTDDTATAA-RPEISASWRRVRAGGLAPGAEPEVAPLSEAEVVSRRSTSTLAPLLPSITASLEPVVDDGLLMVVTDSDGRVLWRRGRTGVRRLADRLGFVSGSAWTEANVGTNAIGTCLVLGEPVHIRGPEHYVESHTRWSC 546
R+RDR L+ + RPEISASWRRVRAGGLAPGAEPEVAPL+E EV SRRSTS LAPLLPSIT+SL PVVDDGLL+VVTD++GRVLWR+G +GVRRLADRLGFV GSAWTE+NVGTNAIGT LV+GEPVHI+GPEHYV+SHTRWSC
Sbjct: 9 RSRDRVLSGGAPSPGIRPEISASWRRVRAGGLAPGAEPEVAPLTEGEVESRRSTSALAPLLPSITSSLAPVVDDGLLVVVTDTEGRVLWRQGSSGVRRLADRLGFVPGSAWTESNVGTNAIGTSLVVGEPVHIQGPEHYVDSHTRWSC 156
BLAST of mRNA_P-wetherbeei_contig52160.1.1 vs. uniprot
Match: R7XVY8_9ACTN (Transcriptional regulator n=2 Tax=Nocardioides TaxID=1839 RepID=R7XVY8_9ACTN) HSP 1 Score: 234 bits (596), Expect = 6.090e-73 Identity = 117/148 (79.05%), Postives = 129/148 (87.16%), Query Frame = 1
Query: 106 RARDRALTDD-TATAARPEISASWRRVRAGGLAPGAEPEVAPLSEAEVVSRRSTSTLAPLLPSITASLEPVVDDGLLMVVTDSDGRVLWRRGRTGVRRLADRLGFVSGSAWTEANVGTNAIGTCLVLGEPVHIRGPEHYVESHTRWSC 546
RAR+R L+ D + RPEISASWRRVRA GLAPGAEP VAPL+E+EV SRRSTS + PLLP IT SL P VDDGLL+VVTD+DGRVLWRRG +GVRRLAD LGFV GSAWTEANVGTNAIGTCLVLG+PVHI+GPEHYV+SHTRWSC
Sbjct: 9 RARERVLSGDGSPQEVRPEISASWRRVRASGLAPGAEPAVAPLTESEVESRRSTSAMVPLLPGITGSLSPAVDDGLLVVVTDTDGRVLWRRGGSGVRRLADGLGFVPGSAWTEANVGTNAIGTCLVLGQPVHIQGPEHYVQSHTRWSC 156
BLAST of mRNA_P-wetherbeei_contig52160.1.1 vs. uniprot
Match: A0A0K1JHW9_9MICO (GAF domain-containing protein n=1 Tax=Luteipulveratus mongoliensis TaxID=571913 RepID=A0A0K1JHW9_9MICO) HSP 1 Score: 201 bits (511), Expect = 4.200e-60 Identity = 100/156 (64.10%), Postives = 120/156 (76.92%), Query Frame = 1
Query: 79 MGDDVGSSHRARDRALTDDTATAARPEISASWRRVRAGGLAPGAEPEVAPLSEAEVVSRRSTSTLAPLLPSITASLEPVVDDGLLMVVTDSDGRVLWRRGRTGVRRLADRLGFVSGSAWTEANVGTNAIGTCLVLGEPVHIRGPEHYVESHTRWSC 546
M D + R R+R L+ AARPEI+ASWRR+RA GL PG+ PEVAPL +++ RR+TS L PLLP +T++L+ VVD G L+V+TD +GRVLWR+G + VRR ADRLGFVSGSAWTE NVGTNAIGTCLVL PV IRG EHYVESHT+W C
Sbjct: 1 MDDQDRAQRRTRERVLSGGHGAAARPEIAASWRRLRASGLDPGSNPEVAPLDRSDIEERRTTSGLLPLLPHLTSALKSVVDAGQLVVITDREGRVLWRQGGSQVRRFADRLGFVSGSAWTEGNVGTNAIGTCLVLNAPVQIRGGEHYVESHTQWGC 156 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig52160.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig52160.1.1 >prot_P-wetherbeei_contig52160.1.1 ID=prot_P-wetherbeei_contig52160.1.1|Name=mRNA_P-wetherbeei_contig52160.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=182bp HDTPGRRIGGRVAGGCNAGEARPGGTMGDDVGSSHRARDRALTDDTATAAback to top mRNA from alignment at P-wetherbeei_contig52160:2..547+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig52160.1.1 ID=mRNA_P-wetherbeei_contig52160.1.1|Name=mRNA_P-wetherbeei_contig52160.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=546bp|location=Sequence derived from alignment at P-wetherbeei_contig52160:2..547+ (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig52160:2..547+ >mRNA_P-wetherbeei_contig52160.1.1 ID=mRNA_P-wetherbeei_contig52160.1.1|Name=mRNA_P-wetherbeei_contig52160.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=546bp|location=Sequence derived from alignment at P-wetherbeei_contig52160:2..547+ (Phaeothamnion wetherbeei SAG_119_79)back to top |