mRNA_P-wetherbeei_contig52152.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig52152.1.1
Unique NamemRNA_P-wetherbeei_contig52152.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig52152.1.1 vs. uniprot
Match: A0A0R3M182_9BRAD (HTH luxR-type domain-containing protein n=1 Tax=Bradyrhizobium valentinum TaxID=1518501 RepID=A0A0R3M182_9BRAD)

HSP 1 Score: 50.1 bits (118), Expect = 9.880e-6
Identity = 25/52 (48.08%), Postives = 36/52 (69.23%), Query Frame = 1 
Query:   16 TALAGGLIALDAGGQVVWMDDATRQAVNGGLKNLTEAIALQSRAGVRCILTT 171
            +AL GGLI +DA GQ+VW+DD TR+ VNGGL++L   I   +   + C +T+
Sbjct:   20 SALRGGLIIVDAKGQIVWIDDNTRRRVNGGLQDLELPIDKSNATVIDCFVTS 71
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig52152.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A0R3M182_9BRAD9.880e-648.08HTH luxR-type domain-containing protein n=1 Tax=Br... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig52152contigP-wetherbeei_contig52152:23..193 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size171
Hectar predicted targeting categorysignal peptide
Exons1
Cds size171
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186782.1819487-CDS-P-wetherbeei_contig52152:22..1931683186782.1819487-CDS-P-wetherbeei_contig52152:22..193Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig52152 23..193 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig52152.1.1prot_P-wetherbeei_contig52152.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig52152 23..193 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig52152.1.1

>prot_P-wetherbeei_contig52152.1.1 ID=prot_P-wetherbeei_contig52152.1.1|Name=mRNA_P-wetherbeei_contig52152.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=57bp
LAEAATALAGGLIALDAGGQVVWMDDATRQAVNGGLKNLTEAIALQSRAG
VRCILTT
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mRNA from alignment at P-wetherbeei_contig52152:23..193-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig52152.1.1 ID=mRNA_P-wetherbeei_contig52152.1.1|Name=mRNA_P-wetherbeei_contig52152.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=171bp|location=Sequence derived from alignment at P-wetherbeei_contig52152:23..193- (Phaeothamnion wetherbeei SAG_119_79)
CTCGCCGAGGCGGCCACGGCGCTCGCCGGCGGCCTGATCGCACTCGACGC
CGGCGGGCAGGTCGTGTGGATGGACGACGCGACGCGCCAGGCCGTCAATG
GCGGACTTAAAAATCTGACCGAAGCCATCGCATTACAAAGCCGAGCAGGG
GTGCGGTGCATCCTGACGACG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig52152:23..193-

>mRNA_P-wetherbeei_contig52152.1.1 ID=mRNA_P-wetherbeei_contig52152.1.1|Name=mRNA_P-wetherbeei_contig52152.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=171bp|location=Sequence derived from alignment at P-wetherbeei_contig52152:23..193- (Phaeothamnion wetherbeei SAG_119_79)
CTCGCCGAGGCGGCCACGGCGCTCGCCGGCGGCCTGATCGCACTCGACGC
CGGCGGGCAGGTCGTGTGGATGGACGACGCGACGCGCCAGGCCGTCAATG
GCGGACTTAAAAATCTGACCGAAGCCATCGCATTACAAAGCCGAGCAGGG
GTGCGGTGCATCCTGACGACG
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