mRNA_P-wetherbeei_contig52150.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
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Overview
Homology
BLAST of mRNA_P-wetherbeei_contig52150.1.1 vs. uniprot
Match: UPI001BA9FDEE (tripartite tricarboxylate transporter substrate-binding protein n=1 Tax=Bradyrhizobium sp. AUGA SZCCT0431 TaxID=2807674 RepID=UPI001BA9FDEE) HSP 1 Score: 340 bits (872), Expect = 9.070e-116 Identity = 172/182 (94.51%), Postives = 173/182 (95.05%), Query Frame = 1
Query: 1 SPALDPKLRWDPVRDFVPIGQICRAPNFFIVPATLPVKTVAEYVALAKAKPGTLNYSHPGKGSTGHLGFELFKRLAGIDVTAIGYRGYPQMVPDIASGLITSTFLSANQALAQVQSGAIRIIGAINDGRSKYFPDAPTMAEQGFAEAQVTPWFGIVASAATPQPIVERISKALETALATAEV 546
SPALD KLRWDPVRDFV IGQICRAPNFFIVP TLPVKTVAEYVALAKAKPGTLNYSHPGKGSTGHLGFELFKRLAGIDVT IGYRGYPQMVPDIASGLITSTFLSANQALAQVQSGAIRIIGAINDGRSKYFPD PTMAEQGFAEAQVTPWFGIV AATP P+VERISKALE ALATAEV
Sbjct: 101 SPALDAKLRWDPVRDFVAIGQICRAPNFFIVPTTLPVKTVAEYVALAKAKPGTLNYSHPGKGSTGHLGFELFKRLAGIDVTGIGYRGYPQMVPDIASGLITSTFLSANQALAQVQSGAIRIIGAINDGRSKYFPDVPTMAEQGFAEAQVTPWFGIVVPAATPLPVVERISKALEAALATAEV 282
BLAST of mRNA_P-wetherbeei_contig52150.1.1 vs. uniprot
Match: A0A1E3EIY4_BRAEL (Tripartite-type tricarboxylate transporter receptor subunit TctC n=24 Tax=Bradyrhizobiaceae TaxID=41294 RepID=A0A1E3EIY4_BRAEL) HSP 1 Score: 324 bits (830), Expect = 2.130e-109 Identity = 161/182 (88.46%), Postives = 171/182 (93.96%), Query Frame = 1
Query: 1 SPALDPKLRWDPVRDFVPIGQICRAPNFFIVPATLPVKTVAEYVALAKAKPGTLNYSHPGKGSTGHLGFELFKRLAGIDVTAIGYRGYPQMVPDIASGLITSTFLSANQALAQVQSGAIRIIGAINDGRSKYFPDAPTMAEQGFAEAQVTPWFGIVASAATPQPIVERISKALETALATAEV 546
SPAL+ +LRWDPVRDFVP+GQIC APNFFIVP +LPVKTVA+YVALAKAKPGTLNYSHPGKGSTGHLGFELFKRLAGIDVTAIGYRGYPQMVPDIASGLITS+FLSANQALAQVQSG+IRIIGAI+DGRSKYF D PTMAEQGFAEAQVTPWFG V A TPQP+VERIS ALETALA+ EV
Sbjct: 100 SPALNTQLRWDPVRDFVPVGQICLAPNFFIVPTSLPVKTVADYVALAKAKPGTLNYSHPGKGSTGHLGFELFKRLAGIDVTAIGYRGYPQMVPDIASGLITSSFLSANQALAQVQSGSIRIIGAISDGRSKYFADVPTMAEQGFAEAQVTPWFGFVVPAGTPQPVVERISAALETALASTEV 281
BLAST of mRNA_P-wetherbeei_contig52150.1.1 vs. uniprot
Match: UPI001BAD1D49 (tripartite tricarboxylate transporter substrate binding protein n=1 Tax=Bradyrhizobium tropiciagri TaxID=312253 RepID=UPI001BAD1D49) HSP 1 Score: 322 bits (826), Expect = 8.620e-109 Identity = 159/182 (87.36%), Postives = 171/182 (93.96%), Query Frame = 1
Query: 1 SPALDPKLRWDPVRDFVPIGQICRAPNFFIVPATLPVKTVAEYVALAKAKPGTLNYSHPGKGSTGHLGFELFKRLAGIDVTAIGYRGYPQMVPDIASGLITSTFLSANQALAQVQSGAIRIIGAINDGRSKYFPDAPTMAEQGFAEAQVTPWFGIVASAATPQPIVERISKALETALATAEV 546
SPAL +LRWDPV+DF+P+GQIC+APNFFIVP++LPVKTVAEYVALAKAKPGTLNYSHPGKGSTGHLGFELFKRLAGIDVTAIGYRGYPQMVPDIASGLITS+FLSANQALAQVQSG IRIIGAI+DGRSKYFPD PTMAEQG+AEAQVTPWFG V A TPQ +VERIS ALETALA+A V
Sbjct: 100 SPALSTQLRWDPVKDFIPVGQICQAPNFFIVPSSLPVKTVAEYVALAKAKPGTLNYSHPGKGSTGHLGFELFKRLAGIDVTAIGYRGYPQMVPDIASGLITSSFLSANQALAQVQSGTIRIIGAISDGRSKYFPDVPTMAEQGYAEAQVTPWFGFVVPAGTPQAVVERISAALETALASAAV 281
BLAST of mRNA_P-wetherbeei_contig52150.1.1 vs. uniprot
Match: A0A850HQ22_9BRAD (Tripartite tricarboxylate transporter substrate binding protein n=1 Tax=Bradyrhizobium sp. 2S1 TaxID=1404429 RepID=A0A850HQ22_9BRAD) HSP 1 Score: 318 bits (815), Expect = 1.980e-108 Identity = 156/182 (85.71%), Postives = 170/182 (93.41%), Query Frame = 1
Query: 1 SPALDPKLRWDPVRDFVPIGQICRAPNFFIVPATLPVKTVAEYVALAKAKPGTLNYSHPGKGSTGHLGFELFKRLAGIDVTAIGYRGYPQMVPDIASGLITSTFLSANQALAQVQSGAIRIIGAINDGRSKYFPDAPTMAEQGFAEAQVTPWFGIVASAATPQPIVERISKALETALATAEV 546
SPAL +LRWDPV+DF P+GQIC APNFFIVPA+LPVKTVA+YV LAKAKPGTLNYSHPGKGSTGHLGFELFKRLAGIDVTAIGYRGYPQMVPDIASGLITS+FLSANQALAQVQSG+IRIIGAI+DGRSKYFPD PT+AEQG+AEAQVTPWFG V +ATP+P+VERIS ALETAL +A V
Sbjct: 11 SPALSTQLRWDPVKDFAPVGQICLAPNFFIVPASLPVKTVADYVVLAKAKPGTLNYSHPGKGSTGHLGFELFKRLAGIDVTAIGYRGYPQMVPDIASGLITSSFLSANQALAQVQSGSIRIIGAISDGRSKYFPDVPTLAEQGYAEAQVTPWFGFVVPSATPRPVVERISAALETALTSAAV 192
BLAST of mRNA_P-wetherbeei_contig52150.1.1 vs. uniprot
Match: A0A1M7KHU7_9BRAD (Tripartite-type tricarboxylate transporter, receptor component TctC n=2 Tax=Bradyrhizobium TaxID=374 RepID=A0A1M7KHU7_9BRAD) HSP 1 Score: 319 bits (817), Expect = 2.150e-107 Identity = 157/182 (86.26%), Postives = 168/182 (92.31%), Query Frame = 1
Query: 1 SPALDPKLRWDPVRDFVPIGQICRAPNFFIVPATLPVKTVAEYVALAKAKPGTLNYSHPGKGSTGHLGFELFKRLAGIDVTAIGYRGYPQMVPDIASGLITSTFLSANQALAQVQSGAIRIIGAINDGRSKYFPDAPTMAEQGFAEAQVTPWFGIVASAATPQPIVERISKALETALATAEV 546
SP+L+ LRWDPVRDF+P+GQ+C APNFFIVP +LPVKTVAEYVALAK KPGTLNYSHPGKGSTGHLGFELFKRLA IDVT IGYRGYPQMVPDIASGLI+STFLSANQALAQVQSG+IRIIG INDGR+KYFPD PTMAEQGFAEAQVTPWFGIV ATP+PIVERISKALE ALA A+V
Sbjct: 102 SPSLNATLRWDPVRDFIPVGQVCVAPNFFIVPTSLPVKTVAEYVALAKEKPGTLNYSHPGKGSTGHLGFELFKRLAAIDVTGIGYRGYPQMVPDIASGLISSTFLSANQALAQVQSGSIRIIGTINDGRTKYFPDVPTMAEQGFAEAQVTPWFGIVLPKATPEPIVERISKALEAALAAADV 283
BLAST of mRNA_P-wetherbeei_contig52150.1.1 vs. uniprot
Match: A0A1H1NTE0_9BRAD (Tripartite-type tricarboxylate transporter, receptor component TctC n=1 Tax=Bradyrhizobium canariense TaxID=255045 RepID=A0A1H1NTE0_9BRAD) HSP 1 Score: 318 bits (816), Expect = 3.050e-107 Identity = 157/182 (86.26%), Postives = 168/182 (92.31%), Query Frame = 1
Query: 1 SPALDPKLRWDPVRDFVPIGQICRAPNFFIVPATLPVKTVAEYVALAKAKPGTLNYSHPGKGSTGHLGFELFKRLAGIDVTAIGYRGYPQMVPDIASGLITSTFLSANQALAQVQSGAIRIIGAINDGRSKYFPDAPTMAEQGFAEAQVTPWFGIVASAATPQPIVERISKALETALATAEV 546
SP+L+ L WDPVRDF+PIGQICRAPNFF+VP TLPVK VAEYVALAKAKPG LNYSHPGKGSTGHLGFELFKRLAGIDVT IGYRGYPQMV DI+SGLITSTFLSANQALAQVQ+G IRIIGAINDGRSKYFPD PTMAEQG+AEAQVTPWFGIV A TP PIV+RISKAL+TALA+A+V
Sbjct: 102 SPSLNVSLHWDPVRDFIPIGQICRAPNFFVVPTTLPVKNVAEYVALAKAKPGKLNYSHPGKGSTGHLGFELFKRLAGIDVTGIGYRGYPQMVADISSGLITSTFLSANQALAQVQTGTIRIIGAINDGRSKYFPDVPTMAEQGYAEAQVTPWFGIVVPAGTPGPIVDRISKALDTALASADV 283
BLAST of mRNA_P-wetherbeei_contig52150.1.1 vs. uniprot
Match: A0A525K1N0_BRASZ (Tripartite tricarboxylate transporter substrate binding protein n=1 Tax=Bradyrhizobium sp. TaxID=376 RepID=A0A525K1N0_BRASZ) HSP 1 Score: 318 bits (815), Expect = 4.330e-107 Identity = 159/182 (87.36%), Postives = 167/182 (91.76%), Query Frame = 1
Query: 1 SPALDPKLRWDPVRDFVPIGQICRAPNFFIVPATLPVKTVAEYVALAKAKPGTLNYSHPGKGSTGHLGFELFKRLAGIDVTAIGYRGYPQMVPDIASGLITSTFLSANQALAQVQSGAIRIIGAINDGRSKYFPDAPTMAEQGFAEAQVTPWFGIVASAATPQPIVERISKALETALATAEV 546
SP+L KLRWDPVRDF+PIGQICRAPNFFIVPA+LPVK VAEYVALAK KPG LNY HPGKGSTGHLGFELFKRLAGIDV IGYRGYPQMV DIA+G +TSTFLSANQALAQVQ+GAIRIIGAINDGRSKYFPD PTMAEQG+AEAQVTPWFGIV A TPQPIVERISKALE ALAT+EV
Sbjct: 102 SPSLFVKLRWDPVRDFIPIGQICRAPNFFIVPASLPVKNVAEYVALAKEKPGVLNYGHPGKGSTGHLGFELFKRLAGIDVPDIGYRGYPQMVSDIATGRLTSTFLSANQALAQVQTGAIRIIGAINDGRSKYFPDVPTMAEQGYAEAQVTPWFGIVVPAGTPQPIVERISKALEAALATSEV 283
BLAST of mRNA_P-wetherbeei_contig52150.1.1 vs. uniprot
Match: UPI001BAA8FDD (tripartite tricarboxylate transporter substrate binding protein n=1 Tax=Bradyrhizobium lablabi TaxID=722472 RepID=UPI001BAA8FDD) HSP 1 Score: 313 bits (803), Expect = 2.520e-105 Identity = 151/182 (82.97%), Postives = 169/182 (92.86%), Query Frame = 1
Query: 1 SPALDPKLRWDPVRDFVPIGQICRAPNFFIVPATLPVKTVAEYVALAKAKPGTLNYSHPGKGSTGHLGFELFKRLAGIDVTAIGYRGYPQMVPDIASGLITSTFLSANQALAQVQSGAIRIIGAINDGRSKYFPDAPTMAEQGFAEAQVTPWFGIVASAATPQPIVERISKALETALATAEV 546
SPAL LRWDPV+D+VP+GQICRAPNFFIVP++LPVK+V E+VALA++KPGTLNYSHPGKGSTGHLGFELFK+LAGIDVT IGYRGYPQMVPDIASGLITSTFLSANQA+AQVQ+GAIR+IGAI+DGRSKYFPD PT+AEQGFAEAQVTPWFG+V A TPQP+V +IS ALE ALAT EV
Sbjct: 98 SPALAKDLRWDPVKDYVPVGQICRAPNFFIVPSSLPVKSVGEFVALARSKPGTLNYSHPGKGSTGHLGFELFKKLAGIDVTGIGYRGYPQMVPDIASGLITSTFLSANQAIAQVQTGAIRVIGAISDGRSKYFPDVPTLAEQGFAEAQVTPWFGVVVPAGTPQPVVAKISTALEAALATPEV 279
BLAST of mRNA_P-wetherbeei_contig52150.1.1 vs. uniprot
Match: A0A525IH05_BRASZ (Tripartite tricarboxylate transporter substrate binding protein n=1 Tax=Bradyrhizobium sp. TaxID=376 RepID=A0A525IH05_BRASZ) HSP 1 Score: 309 bits (791), Expect = 1.910e-103 Identity = 151/182 (82.97%), Postives = 166/182 (91.21%), Query Frame = 1
Query: 1 SPALDPKLRWDPVRDFVPIGQICRAPNFFIVPATLPVKTVAEYVALAKAKPGTLNYSHPGKGSTGHLGFELFKRLAGIDVTAIGYRGYPQMVPDIASGLITSTFLSANQALAQVQSGAIRIIGAINDGRSKYFPDAPTMAEQGFAEAQVTPWFGIVASAATPQPIVERISKALETALATAEV 546
SP+L+ LRWDPVRDF+PIGQIC+APNFFIV +LPVK VAEYVALA+AKPG LNYSHPGKGSTGHLGFELFKRLAGI+VT +GYRGYPQMV DIASGL+ STFLSANQA+AQ+Q+GAIRII INDGRSKYFPD PTMAEQG+AEAQVTPWFGIV A TPQPIV+RIS+ALE ALATAEV
Sbjct: 102 SPSLNITLRWDPVRDFIPIGQICQAPNFFIVSTSLPVKNVAEYVALARAKPGALNYSHPGKGSTGHLGFELFKRLAGIEVTPVGYRGYPQMVADIASGLVNSTFLSANQAMAQMQTGAIRIIATINDGRSKYFPDVPTMAEQGYAEAQVTPWFGIVVPAGTPQPIVDRISRALEAALATAEV 283
BLAST of mRNA_P-wetherbeei_contig52150.1.1 vs. uniprot
Match: A0A533J7G7_9BRAD (Tripartite tricarboxylate transporter substrate binding protein n=1 Tax=Bradyrhizobium icense TaxID=1274631 RepID=A0A533J7G7_9BRAD) HSP 1 Score: 306 bits (784), Expect = 2.070e-102 Identity = 147/182 (80.77%), Postives = 166/182 (91.21%), Query Frame = 1
Query: 1 SPALDPKLRWDPVRDFVPIGQICRAPNFFIVPATLPVKTVAEYVALAKAKPGTLNYSHPGKGSTGHLGFELFKRLAGIDVTAIGYRGYPQMVPDIASGLITSTFLSANQALAQVQSGAIRIIGAINDGRSKYFPDAPTMAEQGFAEAQVTPWFGIVASAATPQPIVERISKALETALATAEV 546
SP+L LRWDPV+DF PIGQICRAPNFFIVP++LPVK+ +E+VALAK+KPGTLNYSHPGKGSTGHLGFELFKRLAGIDVT +GYRGYPQMVPDIASGLI STFLSAN +AQ+Q+GAIRIIGAI+DGRSKYFPD PT+AEQGFAEAQVTPWFG+V + TPQP+V +IS ALE ALATA+V
Sbjct: 100 SPSLAKDLRWDPVKDFAPIGQICRAPNFFIVPSSLPVKSASEFVALAKSKPGTLNYSHPGKGSTGHLGFELFKRLAGIDVTGVGYRGYPQMVPDIASGLINSTFLSANMTMAQLQTGAIRIIGAISDGRSKYFPDVPTLAEQGFAEAQVTPWFGVVVPSGTPQPLVAKISTALEAALATADV 281 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig52150.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig52150.1.1 >prot_P-wetherbeei_contig52150.1.1 ID=prot_P-wetherbeei_contig52150.1.1|Name=mRNA_P-wetherbeei_contig52150.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=182bp SPALDPKLRWDPVRDFVPIGQICRAPNFFIVPATLPVKTVAEYVALAKAKback to top mRNA from alignment at P-wetherbeei_contig52150:2..547- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig52150.1.1 ID=mRNA_P-wetherbeei_contig52150.1.1|Name=mRNA_P-wetherbeei_contig52150.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=546bp|location=Sequence derived from alignment at P-wetherbeei_contig52150:2..547- (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig52150:2..547- >mRNA_P-wetherbeei_contig52150.1.1 ID=mRNA_P-wetherbeei_contig52150.1.1|Name=mRNA_P-wetherbeei_contig52150.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=546bp|location=Sequence derived from alignment at P-wetherbeei_contig52150:2..547- (Phaeothamnion wetherbeei SAG_119_79)back to top |