mRNA_P-wetherbeei_contig5214.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5214.1.1
Unique NamemRNA_P-wetherbeei_contig5214.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig5214.1.1 vs. uniprot
Match: A0A6H5L501_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L501_9PHAE)

HSP 1 Score: 165 bits (417), Expect = 1.500e-41
Identity = 116/335 (34.63%), Postives = 146/335 (43.58%), Query Frame = 3
Query:  906 LALKITKKALVLRRAADQGRKPGAMYGEDPCKELAVLQLLKA------------AGGHPHVEELVAALHDNDFIYKLSKFCDGGEAFAAVPMPEPDAQRLTRQLLSAVAFCHAHGVMHRDISLENCLLETR-----------------------------------------------------------------PDGKSSI-----------------RLIDFGMAIAIPRD-AFGRPLPLAPQGRCGKSSCMAPEVHLDAPFDAAAADLWSCAAVTYMCLLGVAPWRTVGDELFRVVSVDGRLAALLQHWGINGRASPAAVDLLQRMLSADP 1625
            LALK  + +++   A  Q    G + GEDP KE+A LQLL+                   VEEL+ AL D+  +YK+S +  GGE F   PM E  A+ +  Q+L AV+F H+ GV HRDISLEN L++T                                                                  P G S                   RL DFGM++ IP   A G   PL PQGRCGKS+C+APEV  D  FD  A D WS     +M LLGV PW  VGD  F+ ++    L  +LQ W +    S  AVDLLQ ML+ADP
Sbjct:   96 LALKTNRISVLKLEAQWQRCAMGELVGEDPVKEIASLQLLQGDDESTXXXXXXXXXXXXGVEELIEALADDTTLYKISPWYSGGELFDLAPMSEDVARPIFSQILDAVSFVHSKGVCHRDISLENILMDTSSVSKRACAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPSSPQGGSCTAERRKTTDVEGEWFGTPRLCDFGMSVRIPTSPATGNRAPLTPQGRCGKSTCVAPEVFYDQAFDGHAIDTWSVGTTLFMALLGVQPWEEVGDFKFQAIAEGKNLDVVLQGWKLRDAISDEAVDLLQAMLTADP 430          
BLAST of mRNA_P-wetherbeei_contig5214.1.1 vs. uniprot
Match: D8LS94_ECTSI (Stress kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS94_ECTSI)

HSP 1 Score: 154 bits (388), Expect = 1.360e-38
Identity = 96/252 (38.10%), Postives = 122/252 (48.41%), Query Frame = 3
Query:  906 LALKITKKALVLRRAADQGRKPGAMYGEDPCKELAVLQLLK------------AAGGHPHVEELVAALHDNDFIYKLSKFCDGGEAFAAVPMPEPDAQRLTRQLLSAVAFCHAHGVMHRDISLENCLLETRPDGKSSIRLIDFGMAIAIPRDAFGRPLPLAPQGRCGKSSCMAPEVHLDAPFDAAAADLWSCAAVTYMCLLGVAPWRTVGDELFRVVSVDGRLAALLQHWGINGRASPAAVDLLQRMLSADP 1625
            LALK  + +++   A  Q    G + GEDP KE+A LQLL+            A GGH  VEEL+ AL D+  +YK+S +  GGE F   PM E  A+ +  Q+L AV+F H+ G                                           PL PQGRCGKS+C+APEV  D  FD  A D WS     +M LLGV PW  VGD  F+ ++    L  +LQ W +    S  AVDLLQ ML+ADP
Sbjct:   96 LALKTNRISVLKLEAQWQRCAMGELVGEDPVKEIASLQLLQGGDELAASAAGAAGGGHDGVEELIEALADDTTLYKISPWYSGGELFDLAPMSEDVAKPIFSQILDAVSFVHSKG----------------------------------------NRAPLTPQGRCGKSTCVAPEVFYDQAFDGHAIDTWSVGTTLFMALLGVQPWEEVGDFKFQAIAEGKNLDVVLQGWKLRDAISDEAVDLLQAMLTADP 307          
BLAST of mRNA_P-wetherbeei_contig5214.1.1 vs. uniprot
Match: D7FTS8_ECTSI (SOS2 (SALT OVERLY SENSITIVE 2) kinase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FTS8_ECTSI)

HSP 1 Score: 140 bits (353), Expect = 3.090e-33
Identity = 89/223 (39.91%), Postives = 126/223 (56.50%), Query Frame = 3
Query:  987 EDPCKELAVLQLLKAAGGHPHVEELVAALHDNDFIYKLSKFCDGGEAFAAVP----MPEPDAQRLTRQLLSAVAFCHAHGVMHRDISLENCLLETRPDGKSSIRLIDFGMAIAIPRDAFGRPLPLAPQGRCGKSSCMAPEV---HLDAPFDAAAADLWSCAAVTYMCLLGVAPWRTV---GDELFRVVSVDGRLAALLQHWGINGRASPAAVDLLQRMLSADP 1625
            EDP +E+A LQ L +   HP+V     AL D+D IY ++ F  GGE F A+       E +A+ L RQ+L A+     HGV HRD+SLEN LL    D  ++++L+DFG+A+ IP+   G    L PQG CGK   +APEV    + + FD  A D+W+C  + ++ L GV P+       D+  ++V+V+ RL  LL  WGI+   SP A  L+Q  L   P
Sbjct:  152 EDPLREVAALQFLSS---HPNVLPCTEALWDSDSIYIVTPFYSGGEVFDALTDRGRYEEGEARPLFRQVLHALRHLKIHGVCHRDVSLENLLL----DEGNTVKLVDFGLALRIPQKPDGGARVLLPQGPCGKPFYIAPEVLSSSVSSGFDGFAVDVWACGVLLFVMLTGVPPFEMALPSQDQRCQIVAVEERLVDLLSAWGIS--LSPEAAGLIQSCLRHSP 365          
BLAST of mRNA_P-wetherbeei_contig5214.1.1 vs. uniprot
Match: A0A835YUI9_9STRA (Kinase-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUI9_9STRA)

HSP 1 Score: 137 bits (346), Expect = 1.290e-32
Identity = 112/329 (34.04%), Postives = 165/329 (50.15%), Query Frame = 3
Query:  666 VEPPDFPPAVVGRAKVLGTAPLVLLDLQTRKTYG-TLAGADYKDAQFDGVVVQCREVKKAADGTGHGGGDGAGWVDAGGPQLALKITKKALVLRRAADQGRKPGAMYGEDPCKELAVLQLLKAAGGHPHVEELVAALHDNDFIYKLSKFCDGGEAFAAVP----MPEPDAQRLTRQLLSAVAFCHAH--GVMHRDISLENCLLETRPDGKSSIRLIDFGMAIAIPR-DAFGRPLPLAPQGRCGKSSCMAPEVHLDAPFDAAAADLWSCAAVTYMCLLGVAP--WRTVGDELFRVVSVDGRLAALLQHWGINGRASPAAVDLLQRMLSAD 1622
            V  P FP  V   AKV+   P  L+D + +   G  L G+  K  +    +  C   +             AG+  +G  ++  +      VL R   +    G +  E+P  E+A +QL+ A GGHP +  + AAL D + IY +  FC+GG+ F  V     + E  A+ L RQL   +AF       ++HRD+SLEN L+    DG +++ ++DFGM+I +PR +  G    + PQ R GK S M+PEV  + PFDA A D+W+   + Y+ LL   P  W    D+ F++++    LA  LQ WG N   S  A DL+QR L AD
Sbjct:   15 VPAPAFPEPVFEWAKVVPHFPPGLIDEEGQLITGKVLTGSGGKRWELIRCLRDCIHGQVVL---------AAGFTLSGIDRIYEERHSVVKVLYRDRIENSAIGLL--ENPYDEIAAMQLIAARGGHPSILPITAALRDENTIYLVLPFCNGGDLFDYVNEGGGLTEEQARPLFRQLADGLAFLQREDIAILHRDMSLENVLMH---DG-AALLVMDFGMSIRLPRAEEPGVRALIPPQTRRGKRSYMSPEVFAEMPFDAKA-DVWALGVMCYVMLLRRLPYSWPHGNDQYFQLIAQRHELAVRLQQWGFN--VSAEAADLMQRCLMAD 325          
BLAST of mRNA_P-wetherbeei_contig5214.1.1 vs. uniprot
Match: A0A6U0UU60_9STRA (Hypothetical protein n=3 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A6U0UU60_9STRA)

HSP 1 Score: 137 bits (346), Expect = 1.940e-32
Identity = 106/339 (31.27%), Postives = 155/339 (45.72%), Query Frame = 3
Query:  663 PVEPPDFPPAVVGRAKV------------LGTAPLVLLDLQTRKTYGTLAGADYKDAQFDGVVVQCREVKKAADGTGHGGGDGAGWVDAGGPQLALKITKKALVLRRAAD-QGRKPGAMYGEDPCKELAVLQLLKA-AGGHPHVEELVAALHDNDFIYKLSKFCDGGEAFAAVPMP---EPD-AQRLTRQLLSAVAFCHAHGVMHRDISLENCLLETRPDGKSSIRLIDFGMAIAIPRDAFGRPLPLAPQGRCGKSSCMAPEVHLDAPFDAAAADLWSCAAVTYMCLLGVAPWRTVGDELFRVVSV-DGRLAALLQHWGINGRASPAAVDLLQRMLSAD 1622
            P+ P +FP A +G A              +G   ++LLD               +DA +  VV  CR +                  D         +  K + L++  + +GR     + E+P  E+A +  L + AGGHPHV    A       ++ +  +C GGE  + +      EP+ A+ L RQ+   V F     V HRD+SLEN LL  R + +    LIDFGMA+ IPRD  GR   ++ Q R GK   M+PE+    PFD +  D+W+   + ++ L+GV PWR       R + V  G L  LL+HWG+  R    AVDLL+R+   D
Sbjct:   23 PMSPEEFPAADIGAAVFQQKMVVDERGLDVGGGEILLLDTPNGDFQAYHLVRTLRDAIYGRVVSGCRVIPTEDP-------------DRVRLDERAMVAVKMMSLQKIEEMRGR-----HAENPFNEIACMSFLHSQAGGHPHVLMYEALCRTQSHLFMIMPYCSGGELHSVIEENGALEPERARALFRQMTQGVEFLGRASVAHRDLSLENVLLHRRIEEERIAMLIDFGMALRIPRDKDGRCHWISRQLRAGKLHYMSPEIISQRPFDGSKIDVWALGVMLFIMLVGVPPWRMADRRDQRYICVVSGELPRLLEHWGV--RVPGDAVDLLKRIFVED 341          
BLAST of mRNA_P-wetherbeei_contig5214.1.1 vs. uniprot
Match: A0A5A8DCS1_CAFRO (Uncharacterized protein n=3 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8DCS1_CAFRO)

HSP 1 Score: 140 bits (352), Expect = 1.610e-31
Identity = 94/249 (37.75%), Postives = 132/249 (53.01%), Query Frame = 3
Query:  897 GPQLALKITKKALVLRRAADQGRKPGAMYGEDPCKELAVLQLLKAAGGHPHVEELVAALHDNDFIYKLSKFCDGGEAFAAVP------MPEPDAQRLTRQLLSAVAFCHAHGVMHRDISLENCLLETRPDGKSSIRLIDFGMAIAIPRDAFGRPLPLAPQGRCGKSSCMAPEVHLDAPFDAAAADLWSCAAVTYMCLLGVAPWRTVGD---ELFRVVSVDGRLAALLQHWGINGRASPAAVDLLQRMLS 1616
            G Q ALK   K  +    +  GR+      EDP  E+  +  L     H +V  + A   D  F++   +   GG+ F AV        PE  A+R+ RQ+L  + F H HG++HRD+SLEN +L +R  G + +++ID G+ +   R A G    + PQG  GK+S MAPE +LD+ FD +  DLW  A + +M L GV P+R        LFR +   GRL  L+  WG+ G  SP A DLL+RMLS
Sbjct:   77 GEQRALKRLSKYHLEHGISLDGRR----ISEDPVLEIGAMHYLSKRPPHGNVMFMHAVYEDASFLFLELECLGGGDLFEAVQGSPGGKFPEARARRVLRQVLQGLCFMHGHGIIHRDLSLENVMLASRDPG-AEVKIIDMGLCVDRWRFAPGL---IPPQGCVGKASYMAPETYLDSEFDESV-DLWCVAVMLFMMLFGVPPYRKPHAGLCALFREIEA-GRLLDLVAKWGMGGSVSPDAQDLLRRMLS 315          
BLAST of mRNA_P-wetherbeei_contig5214.1.1 vs. uniprot
Match: A0A8K1FIF3_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FIF3_PYTOL)

HSP 1 Score: 134 bits (337), Expect = 3.080e-31
Identity = 89/247 (36.03%), Postives = 137/247 (55.47%), Query Frame = 3
Query:  903 QLALKITKKALVLRRAADQGRKPGAMYGEDPCKELAVLQLLKAAGGHPHVEELVAALHDNDFIYKLSKFCDGGEAFAAVP----MPEPDAQRLTRQLLSAVAFCHAHGVMHRDISLENCLLETRPDGKSSIRLIDFGMAIAIPRDAFGRPLPLAPQGRCGKSSCMAPEVHLD-APFDAAAADLWSCAAVTYMCLLGVAPWRTV--GDELFRVVSVDGRLAALLQHWGINGRASPAAVDLLQRMLSAD 1622
            ++A+K+  KA++     ++G        E+P  ELA  Q L A G H +V  L+  LHD+++IY +  FCDGGE F+ V     M E   +    Q+L+ +++  +  + HRD+SLEN LL    DG  S ++IDFG+AI IP D+ G    L P G  GK   M PE++ +  PF+  +AD+WS   + ++ + G  P+      D  F++++  GRL+ +L  WG+    SP+  DLL RML  D
Sbjct:  111 EVAIKVMSKAII-----EEGN-----LQENPLVELATQQHLSAPG-HENVLLLIECLHDSEYIYAVLPFCDGGELFSLVESGGAMDETQCRHWFAQVLAGLSYLQSRYICHRDMSLENVLL----DGNIS-KIIDFGLAIGIPVDSHGMTYSLPPAGAVGKIFYMPPEIYRNQVPFNGFSADIWSTGVMLFIMVTGAPPFERPDDADPRFQMIA-KGRLSDMLDSWGMF-HISPSVRDLLSRMLIVD 339          
BLAST of mRNA_P-wetherbeei_contig5214.1.1 vs. uniprot
Match: A0A7S2P167_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2P167_9STRA)

HSP 1 Score: 134 bits (337), Expect = 5.220e-31
Identity = 89/263 (33.84%), Postives = 138/263 (52.47%), Query Frame = 3
Query:  897 GPQLALKITKKALVLRRAADQGRKPGAMYGEDPCKELAVLQLLK-AAGGHPHVEELVAALHDNDFIYKLSKFCDGGEAFAAVP----MPEPDAQRLTRQLLSAVAFCHAHGVMHRDISLENCLLETRPDGKSSIRLIDFGMAIAIPRD-----------AFGRPLPLAPQGRCGKSSCMAPEVHLDA-PFDAAAADLWSCAAVTYMCLLGVAPW--RTVGDELFRVVSVDGRLAALLQHWGINGRASPAAVDLLQRMLSADPR 1628
            G  +A+KI    L+        RK   ++ E+P KE+A +Q L+      PHV   +  + D  ++Y    +C GGE F+ V      PEP A+   RQL+  +      G+ HRD+SLEN L+    DG +++ +ID GM + IP             A+     + PQG+CGK + M+PEV  ++ PFD    D+W+   + +  L+G+ PW   T  D  F+++++DG+L  +L+ WG +   SP A DLLQ +L A PR
Sbjct:  116 GKFVAVKIMDWDLI--------RKLSGVHKEEPLKEIAAMQSLRNTLDACPHVMPTLDVMTDQQYLYSFMPYCSGGELFSYVQRDGRFPEPLARFWFRQLVQGIFHLQKAGICHRDMSLENVLV----DGNNAV-VIDLGMCLRIPFSDDDTGGVTDVTAYTLRRLMPPQGQCGKPNYMSPEVLENSEPFDGFGVDVWAVGIILFTMLVGLPPWDWATKEDLRFKMIAIDGQLGEMLRQWGRS--VSPLATDLLQGILRAHPR 363          
BLAST of mRNA_P-wetherbeei_contig5214.1.1 vs. uniprot
Match: A0A397DIW4_9STRA (Protein kinase domain-containing protein n=4 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397DIW4_9STRA)

HSP 1 Score: 132 bits (332), Expect = 2.570e-30
Identity = 90/244 (36.89%), Postives = 131/244 (53.69%), Query Frame = 3
Query:  903 QLALKITKKALVLRRAADQGRKPGAMYGEDPCKELAVLQLLKAAGGHPHVEELVAALHDNDFIYKLSKFCDGGEAFAAVP----MPEPDAQRLTRQLLSAVAFCHAHGVMHRDISLENCLLETRPDGKSSIRLIDFGMAIAIPRDAFGRPLPLAPQGRCGKSSCMAPEVHLD-APFDAAAADLWSCAAVTYMCLLGVAPWRTVGD--ELFRVVSVDGRLAALLQHWGINGRASPAAVDLLQRML 1613
            ++A+K+  KA++      QG        E+P  ELA  Q L   G HPH+E     LHD +FIY +  FC GGE F+ V     M E + +R   Q+L  VA+  +  + HRD+SLEN LL    DG +S ++IDFG+ + IP DA G    L P G  GK   M PE++ +  PF+  AAD+WS   + ++ + G  P+    D    F++++  GR+  +L  WG+    S A  DLL R+L
Sbjct:  143 EVAIKVMSKAII-----QQGN-----LQENPLVELATQQYLSTPG-HPHIE----CLHDPEFIYAVLPFCRGGELFSLVETGGAMDEGECRRWFTQVLRGVAYLQSRYICHRDMSLENVLL----DGNTS-KIIDFGLCVGIPVDANGMTYALPPSGAVGKIFYMPPEIYRNQVPFNGFAADIWSMGVMLFIMVTGAPPFERPDDMDPRFQMIAT-GRMNEMLDSWGMT-HVSSAVRDLLNRLL 364          
BLAST of mRNA_P-wetherbeei_contig5214.1.1 vs. uniprot
Match: D7G0N3_ECTSI (Protein kinase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0N3_ECTSI)

HSP 1 Score: 131 bits (329), Expect = 2.890e-30
Identity = 87/265 (32.83%), Postives = 135/265 (50.94%), Query Frame = 3
Query:  927 KALVLRRAADQGRKPGAMYGEDPCKELAVLQLLKAAGGHPHVEELVAALHDNDFIYKLSKFCDGGEAFAAVPMP-------------EPDAQRLTRQLLSAVAFCHAHGVMHRDISLENCLLETRPDGKSSIRLIDFGMAIAIPRDAFGRPL---------------PLAPQGRCGKSSCMAPEVHL-DAPFDAAAADLWSCAAVTYMCLLGVAPWRT---VGDELFRVVSVDGRLAALLQHWGINGRASPAAVDLLQRMLSADP 1625
            K + L R +    +P     EDP +E+A+LQ LKA G HP+V E+V  L D ++IY +  FC+GGE ++AV  P             E  A+ + R LL+ +AF H+H + HRD+SLEN +L    +    +++IDFG+A+   R    RP                 ++P G  GK   M PEV + +  ++  A D+W+   V ++ L G+ P+       D    V++V+ RL  +++ WG+    S  AV L+Q  L  DP
Sbjct:   74 KQMSLERISSMAGRPSC---EDPLQEVAILQFLKAHGSHPNVIEVVEVLRDEEYIYVVLPFCNGGELYSAVSPPSTGLVPAARTGLNEDVARPIIRGLLAGMAFLHSHQICHRDVSLENIVLAVTGE----VKIIDFGLAL---RSGQHRPQGRMAQFDGDNQFNARSISPTGPFGKKHYMPPEVAMNEEDYNGFAVDVWALGVVMFITLAGIPPFHIPIPARDHRCHVIAVERRLLEVVRRWGLT--MSDEAVSLIQACLLFDP 326          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5214.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L501_9PHAE1.500e-4134.63Protein kinase domain-containing protein n=1 Tax=E... [more]
D8LS94_ECTSI1.360e-3838.10Stress kinase n=1 Tax=Ectocarpus siliculosus TaxID... [more]
D7FTS8_ECTSI3.090e-3339.91SOS2 (SALT OVERLY SENSITIVE 2) kinase n=2 Tax=Ecto... [more]
A0A835YUI9_9STRA1.290e-3234.04Kinase-like domain-containing protein n=1 Tax=Trib... [more]
A0A6U0UU60_9STRA1.940e-3231.27Hypothetical protein n=3 Tax=Pinguiococcus pyrenoi... [more]
A0A5A8DCS1_CAFRO1.610e-3137.75Uncharacterized protein n=3 Tax=Cafeteria roenberg... [more]
A0A8K1FIF3_PYTOL3.080e-3136.03Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A7S2P167_9STRA5.220e-3133.84Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A397DIW4_9STRA2.570e-3036.89Protein kinase domain-containing protein n=4 Tax=A... [more]
D7G0N3_ECTSI2.890e-3032.83Protein kinase domain-containing protein n=1 Tax=E... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5214contigP-wetherbeei_contig5214:1077..2891 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FTS8
PFAMsPkinase
Model size1630
Max annot lvl2759|Eukaryota
KEGG rclassRC01978
KEGG koko:K03644
KEGG ReactionR07767,R07768
KEGG Pathwayko00785,ko01100,map00785,map01100
Hectar predicted targeting categoryother localisation
Exons2
Evalue1.87e-35
EggNOG OGsKOG0583@1|root,KOG0583@2759|Eukaryota
EC2.8.1.8
Descriptionprotein serine/threonine kinase activity
Cds size1068
COG categoryG
BRITEko00000,ko00001,ko01000
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186781.9359033-UTR-P-wetherbeei_contig5214:1076..16361683186781.9359033-UTR-P-wetherbeei_contig5214:1076..1636Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5214 1077..1636 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186781.9477818-CDS-P-wetherbeei_contig5214:1636..23011683186781.9477818-CDS-P-wetherbeei_contig5214:1636..2301Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5214 1637..2301 +
1683186781.9585855-CDS-P-wetherbeei_contig5214:2488..28911683186781.9585855-CDS-P-wetherbeei_contig5214:2488..2891Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5214 2489..2891 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5214.1.1prot_P-wetherbeei_contig5214.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5214 1637..2891 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5214.1.1

>prot_P-wetherbeei_contig5214.1.1 ID=prot_P-wetherbeei_contig5214.1.1|Name=mRNA_P-wetherbeei_contig5214.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=356bp
MVQSMRERERKLCSASTALDVVSPQRVRRGHGPFPVEPPDFPPAVVGRAK
VLGTAPLVLLDLQTRKTYGTLAGADYKDAQFDGVVVQCREVKKAADGTGH
GGGDGAGWVDAGGPQLALKITKKALVLRRAADQGRKPGAMYGEDPCKELA
VLQLLKAAGGHPHVEELVAALHDNDFIYKLSKFCDGGEAFAAVPMPEPDA
QRLTRQLLSAVAFCHAHGVMHRDISLENCLLETRPDGKSSIRLIDFGMAI
AIPRDAFGRPLPLAPQGRCGKSSCMAPEVHLDAPFDAAAADLWSCAAVTY
MCLLGVAPWRTVGDELFRVVSVDGRLAALLQHWGINGRASPAAVDLLQRM
LSADPR
back to top

mRNA from alignment at P-wetherbeei_contig5214:1077..2891+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5214.1.1 ID=mRNA_P-wetherbeei_contig5214.1.1|Name=mRNA_P-wetherbeei_contig5214.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1815bp|location=Sequence derived from alignment at P-wetherbeei_contig5214:1077..2891+ (Phaeothamnion wetherbeei SAG_119_79)
CACTGTACTAGCTACACATGGGAATATCTACTTGCGTTGGTGGCGAGCAG AAGGCCTCTTGATATGGCCCCAAGTCTTCCGTCACGCCCCTTTTTCATGT TCGCCTCACACCACTCCTCGCGGGAATACTGCAACAGCAAGTTCGAAGCA TGACTGGGTTTGTTTTGCCGTTACAGGCCAGGTGTTTCATTCTGGCCGAC GGCAGGCCAAGCCAGGGTACTGGATCACAAGAGACTGGGGTTTCAGGCGC CTACAACCACCACCCGTCTCCTCAATCTGCGTATACCTCCCCATTCTCCC GCGCAGAAAAACAGTATCTTGGCGGAGGCTGGAGACTTTTGCAGACCTGG CGCCTTCCGGCGGGCGGCAGGCGGAAACATGTCCTCAATCTCACACCTTC CGCTGTCGCCTAAAACGAAAGATGTTGAGACAGTAGAATGTCATAGTGTG TCGGTCGACCGACGTTGCCGCGCGCACCCGCTTTCTGTGCAAGATTTCCT TCGTACTAGAAGAGGAGTTTGACTTCGTTTTCAGAGAAAACAGCTTCACT TACTTTTATCATGGTCCAGTCAATGCGGGAGCGCGAACGGAAGTTGTGCT CAGCGTCGACCGCCCTTGACGTCGTCTCTCCTCAGCGAGTTCGCAGGGGG CACGGGCCTTTCCCCGTCGAGCCGCCTGATTTCCCGCCTGCCGTCGTCGG CCGAGCGAAGGTCCTGGGCACGGCGCCGCTCGTGTTGTTGGATTTGCAGA CCCGGAAGACGTACGGTACGCTCGCGGGTGCCGATTACAAGGACGCCCAG TTCGACGGCGTCGTCGTGCAGTGCAGAGAAGTGAAGAAGGCGGCCGATGG AACCGGACACGGCGGAGGGGATGGCGCCGGCTGGGTCGATGCTGGTGGCC CCCAGCTCGCTTTGAAGATCACCAAGAAGGCGCTCGTCCTTCGACGCGCG GCCGACCAGGGCCGCAAGCCGGGCGCGATGTACGGCGAGGACCCTTGCAA GGAACTCGCCGTCCTTCAGCTTCTCAAAGCCGCCGGCGGCCACCCGCACG TTGAGGAGCTCGTCGCGGCGCTGCATGACAATGACTTCATCTACAAATTA AGCAAGTTCTGCGACGGCGGCGAGGCGTTCGCGGCCGTCCCGATGCCCGA GCCCGACGCGCAGCGGCTCACGCGCCAGTTGCTCTCCGCCGTCGCATTCT GCCACGCTCACGGCGTCATGCACAGGTGTGTGAGGAGGTTTTGTTCATGT CAATTCTTTTCATATCTTTGCTGGTAGAAGTGGCGTGCTCTTTTCGCGGC GTCGCAGGCCTTCCCGCACCGTTTTCTTGCGCTTGAATTTCCCCTCTATC CGCCGCCCGAGGATTTTTGGTGGCTTACCGTCATCTGTGGTTCCCGTTCT CATCTTTAACAGGGACATCAGCCTCGAGAACTGTCTGCTGGAGACGCGCC CCGACGGCAAGTCGTCGATCCGTCTCATCGACTTCGGCATGGCCATCGCG ATCCCGCGCGACGCGTTCGGCCGGCCGCTGCCGCTGGCGCCGCAGGGCCG CTGCGGCAAGTCGTCATGCATGGCGCCGGAAGTGCACCTTGACGCGCCGT TCGACGCCGCCGCCGCCGACCTCTGGAGCTGCGCCGCCGTCACGTATATG TGCCTACTGGGCGTGGCGCCGTGGCGGACGGTCGGCGACGAGCTGTTCCG AGTCGTGTCCGTCGACGGAAGGCTGGCGGCGCTGCTCCAGCACTGGGGCA TCAACGGCCGCGCGTCGCCCGCCGCGGTCGACCTACTGCAGCGGATGCTC AGTGCAGACCCGCGG
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig5214:1077..2891+

>mRNA_P-wetherbeei_contig5214.1.1 ID=mRNA_P-wetherbeei_contig5214.1.1|Name=mRNA_P-wetherbeei_contig5214.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1068bp|location=Sequence derived from alignment at P-wetherbeei_contig5214:1077..2891+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGTCCAGTCAATGCGGGAGCGCGAACGGAAGTTGTGCTCAGCGTCGAC
CGCCCTTGACGTCGTCTCTCCTCAGCGAGTTCGCAGGGGGCACGGGCCTT
TCCCCGTCGAGCCGCCTGATTTCCCGCCTGCCGTCGTCGGCCGAGCGAAG
GTCCTGGGCACGGCGCCGCTCGTGTTGTTGGATTTGCAGACCCGGAAGAC
GTACGGTACGCTCGCGGGTGCCGATTACAAGGACGCCCAGTTCGACGGCG
TCGTCGTGCAGTGCAGAGAAGTGAAGAAGGCGGCCGATGGAACCGGACAC
GGCGGAGGGGATGGCGCCGGCTGGGTCGATGCTGGTGGCCCCCAGCTCGC
TTTGAAGATCACCAAGAAGGCGCTCGTCCTTCGACGCGCGGCCGACCAGG
GCCGCAAGCCGGGCGCGATGTACGGCGAGGACCCTTGCAAGGAACTCGCC
GTCCTTCAGCTTCTCAAAGCCGCCGGCGGCCACCCGCACGTTGAGGAGCT
CGTCGCGGCGCTGCATGACAATGACTTCATCTACAAATTAAGCAAGTTCT
GCGACGGCGGCGAGGCGTTCGCGGCCGTCCCGATGCCCGAGCCCGACGCG
CAGCGGCTCACGCGCCAGTTGCTCTCCGCCGTCGCATTCTGCCACGCTCA
CGGCGTCATGCACAGGGACATCAGCCTCGAGAACTGTCTGCTGGAGACGC
GCCCCGACGGCAAGTCGTCGATCCGTCTCATCGACTTCGGCATGGCCATC
GCGATCCCGCGCGACGCGTTCGGCCGGCCGCTGCCGCTGGCGCCGCAGGG
CCGCTGCGGCAAGTCGTCATGCATGGCGCCGGAAGTGCACCTTGACGCGC
CGTTCGACGCCGCCGCCGCCGACCTCTGGAGCTGCGCCGCCGTCACGTAT
ATGTGCCTACTGGGCGTGGCGCCGTGGCGGACGGTCGGCGACGAGCTGTT
CCGAGTCGTGTCCGTCGACGGAAGGCTGGCGGCGCTGCTCCAGCACTGGG
GCATCAACGGCCGCGCGTCGCCCGCCGCGGTCGACCTACTGCAGCGGATG
CTCAGTGCAGACCCGCGG
back to top