mRNA_P-wetherbeei_contig52102.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig52102.1.1
Unique NamemRNA_P-wetherbeei_contig52102.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig52102.1.1 vs. uniprot
Match: A0A7X9Q335_9ACTN (Uncharacterized protein n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A7X9Q335_9ACTN)

HSP 1 Score: 149 bits (376), Expect = 6.280e-42
Identity = 78/148 (52.70%), Postives = 100/148 (67.57%), Query Frame = 1
Query:   13 VRRLFAIVLAALALSACKVDXXXXXXXXXXXXXXXXXXALADGELVTATPGLVDDLRFEDAVAAGWTVDGPSNTTGGGLRVVLSHTFDSAAEGTALLRSINGTGGPVHDVAIAL----DGSSVALTGSLRVDGGLNAFADPDVLAAIG 444
            +RR FA++L ALAL+ACKVD                  A+AD E+V   PGL +DLRF+DA+AAGW +  P+ T  GGL+VVL+H F +  E TALL+SING GGP+HD+A+      D  +  L G+LRVDGG++AFADPDVLAAIG
Sbjct:    1 MRRAFALLLVALALTACKVDTTVHVQVNADGTGSITLTAVADAEVVEQAPGLAEDLRFDDAIAAGWALTAPAATDTGGLQVVLTHEFATVEEATALLQSINGPGGPLHDIALTRAVTDDDITTGLAGTLRVDGGIDAFADPDVLAAIG 148          
BLAST of mRNA_P-wetherbeei_contig52102.1.1 vs. uniprot
Match: A0A3C2BA15_9ACTN (Uncharacterized protein n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A3C2BA15_9ACTN)

HSP 1 Score: 146 bits (369), Expect = 5.590e-41
Identity = 79/148 (53.38%), Postives = 101/148 (68.24%), Query Frame = 1
Query:   13 VRRLFAIVLAALALSACKVDXXXXXXXXXXXXXXXXXXALADGELVTATPGLVDDLRFEDAVAAGWTVDGPSNTTGGGLRVVLSHTFDSAAEGTALLRSINGTGGPVHDVAI--ALDGSSV--ALTGSLRVDGGLNAFADPDVLAAIG 444
            +RR+FA+V+AA+ L+AC+VD                   +AD  +V   PGL DDLR +DAVAAGWTVDGP+ T  GGLRVV++ +F S  E TALL S+NGTGGP+  + +  ++  S V  +L GSLRVDGGLNAFADPD+LAAIG
Sbjct:    1 MRRVFAVVVAAMLLAACRVDTTVTVEVEADGSGVITIEVVADAAVVAQAPGLADDLRLDDAVAAGWTVDGPTATDSGGLRVVVTRSFASVDEATALLGSVNGTGGPLQGITLTRSVTDSEVTTSLNGSLRVDGGLNAFADPDLLAAIG 148          
BLAST of mRNA_P-wetherbeei_contig52102.1.1 vs. uniprot
Match: A0A6I3F3C3_9ACTN (Uncharacterized protein n=2 Tax=root TaxID=1 RepID=A0A6I3F3C3_9ACTN)

HSP 1 Score: 145 bits (366), Expect = 1.540e-40
Identity = 76/148 (51.35%), Postives = 99/148 (66.89%), Query Frame = 1
Query:   13 VRRLFAIVLAALALSACKVDXXXXXXXXXXXXXXXXXXALADGELVTATPGLVDDLRFEDAVAAGWTVDGPSNTTGGGLRVVLSHTFDSAAEGTALLRSINGTGGPVHDVAIALDGSS----VALTGSLRVDGGLNAFADPDVLAAIG 444
            +RR   +++AAL L+ACKVD                   +AD ++V   PGL  DL+F+DA AAGW VDGP++T  GG+ V L+H F +A E TALLRS+NG GGP+HDVAI    ++     ALTG+LRV+GG++AFADPDVLAAIG
Sbjct:    1 MRRALLLIVAALTLAACKVDATVHITMRPDGGGSIALTVVADQQVVQQAPGLAADLKFDDATAAGWQVDGPTDTADGGVEVTLTHDFTTAEEATALLRSLNGNGGPLHDVAITRTVTTQKLTTALTGALRVEGGVDAFADPDVLAAIG 148          
BLAST of mRNA_P-wetherbeei_contig52102.1.1 vs. uniprot
Match: A0A6I2VWP6_9ACTN (Uncharacterized protein (Fragment) n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A6I2VWP6_9ACTN)

HSP 1 Score: 111 bits (278), Expect = 7.250e-28
Identity = 58/138 (42.03%), Postives = 79/138 (57.25%), Query Frame = 1
Query:   19 RLFAIVLAALALSACKVDXXXXXXXXXXXXXXXXXXALADGELVTATPGLVDDLRFEDAVAAGWTVDGPSNTTGGGLRVVLSHTFDSAAEGTALLRSINGTGGPVHDVAIALDG----SSVALTGSLRVDGGLNAFAD 420
            R+ A++ A   L++C+VD                   +AD E+V A PGL  D+R +D VAAGWTVDGP  +  G L +V+ H+F+   E TALL  ING  GP+HD+ +   G    S+  LTG L ++GGL AFAD
Sbjct:    8 RIVAVIAATFILASCRVDTSVSMRVQPNGSGTIRVVVIADAEIVKAAPGLKGDIRVDDLVAAGWTVDGPRTSDDGALVLVIQHSFNGPTEATALLSQINGARGPLHDMTLTRTGKDTNSTWKLTGRLEINGGLEAFAD 145          
BLAST of mRNA_P-wetherbeei_contig52102.1.1 vs. uniprot
Match: A0A3D0HJ40_9ACTN (Uncharacterized protein (Fragment) n=1 Tax=Acidimicrobium sp. TaxID=1872112 RepID=A0A3D0HJ40_9ACTN)

HSP 1 Score: 109 bits (273), Expect = 1.660e-27
Identity = 60/144 (41.67%), Postives = 82/144 (56.94%), Query Frame = 1
Query:   25 FAIVLAALALSACKVDXXXXXXXXXXXXXXXXXXALADGELVTATPGLVDDLRFEDAVAAGWTVDGPSNTTGGGLRVVLSHTFDSAAEGTALLRSINGTGGPVHDVAIALDG----SSVALTGSLRVDGGLNAFADPDVLAAIG 444
            F +V A   L +C+V+                   +AD E+V A P LVDDLRF+DA AAGW V  P+ T  GGL+V L HTFD+A +   +L  ++G  GP   ++++ +G    S+  L G L+VDGGLNAFAD  +L  IG
Sbjct:    6 FGLVAAVAILCSCQVNAVVTLDVAQSGAGTVTLNLIADSEVVAAAPNLVDDLRFDDATAAGWVVTRPNKTADGGLQVSLKHTFDNAEQAGVILNQLSGEFGPFKQMSLSRNGKDTDSTFTLDGILQVDGGLNAFADTRLLRTIG 149          
BLAST of mRNA_P-wetherbeei_contig52102.1.1 vs. uniprot
Match: A0A4P5RDM7_9ACTN (Uncharacterized protein n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A4P5RDM7_9ACTN)

HSP 1 Score: 112 bits (279), Expect = 1.710e-27
Identity = 63/153 (41.18%), Postives = 86/153 (56.21%), Query Frame = 1
Query:    1 HDRFVR-RLFAIVLAALALSACKVDXXXXXXXXXXXXXXXXXXALADGELVTATPGLVDDLRFEDAVAAGWTVDGPSNTTGGGLRVVLSHTFDSAAEGTALLRSINGTGGPVHDVAIALDG----SSVALTGSLRVDGGLNAFADPDVLAAIG 444
            H RF + + F +V A + L +C+V+                   +AD E+V A P L DDLRF+DA AAGW V  P+ T  GGL+V L HTFD+A +  A+L  ++G  GP   +++   G    S+  L G L+VDGGLNAFAD  +L  IG
Sbjct:    5 HRRFSKFKNFGLVAAVMILCSCQVNAVVTLDVAQSGAGSVTLNLIADSEVVAAAPNLADDLRFDDATAAGWVVSRPNKTADGGLQVSLKHTFDNAEQAGAVLNQLSGEFGPFKQMSLTRTGKDTDSTFTLDGILQVDGGLNAFADTRLLKTIG 157          
BLAST of mRNA_P-wetherbeei_contig52102.1.1 vs. uniprot
Match: A0A6L6E1Z9_9ACTN (Uncharacterized protein n=6 Tax=root TaxID=1 RepID=A0A6L6E1Z9_9ACTN)

HSP 1 Score: 110 bits (274), Expect = 8.660e-27
Identity = 64/150 (42.67%), Postives = 84/150 (56.00%), Query Frame = 1
Query:    7 RFVRRLFAIVLAALALSACKVDXXXXXXXXXXXXXXXXXXALADGELVTATPGLVDDLRFEDAVAAGWTVDGPSNTTGGGLRVVLSHTFDSAAEGTALLRSINGTGGPVHDVAIALDG----SSVALTGSLRVDGGLNAFADPDVLAAIG 444
            RFVR   A V A + LS+C+VD                    AD  +V+  P L  D+R +DAV AGW V GPS+T  GGL + L+H+F   AE TALL  +NGT GP+H++ ++  G    S+  L G L V+GGL AFAD   LA +G
Sbjct:    5 RFVRAA-AAVAALVLLSSCRVDSRVSLQVQPNGTGKISVIVTADKAIVSKAPSLKADIRVDDAVKAGWKVQGPSDTKEGGLTITLTHSFSGPAEATALLTQVNGTRGPLHNMVLSRSGKDTNSTWKLAGRLEVNGGLEAFADDATLALLG 153          
BLAST of mRNA_P-wetherbeei_contig52102.1.1 vs. uniprot
Match: A0A6L6DU37_9ACTN (Uncharacterized protein n=4 Tax=root TaxID=1 RepID=A0A6L6DU37_9ACTN)

HSP 1 Score: 107 bits (267), Expect = 9.450e-26
Identity = 59/150 (39.33%), Postives = 81/150 (54.00%), Query Frame = 1
Query:    7 RFVRRLFAIVLAALALSACKVDXXXXXXXXXXXXXXXXXXALADGELVTATPGLVDDLRFEDAVAAGWTVDGPSNTTGGGLRVVLSHTFDSAAEGTALLRSINGTGGPVHDVAIALDG----SSVALTGSLRVDGGLNAFADPDVLAAIG 444
            + V R+ A   A + LS+C+VD                    AD ++VT  P L  D+R +D VAAGW +DGPS+T  GGL + ++H+F   AE T L+  ING  GP+H++ I   G    S+  L G L V+GGL AFAD   L  +G
Sbjct:    4 KVVVRIAASFAAVIVLSSCRVDTNISLAVKPNGTGTISVVVTADKDIVTKAPDLKADIRTDDLVAAGWKIDGPSDTKDGGLTITMTHSFTGPAEATILMSQINGARGPLHEMVITRTGKDTNSTYTLAGRLEVNGGLQAFADDATLNLLG 153          
BLAST of mRNA_P-wetherbeei_contig52102.1.1 vs. uniprot
Match: A0A356WFK1_9ACTN (Uncharacterized protein n=1 Tax=Acidimicrobium sp. TaxID=1872112 RepID=A0A356WFK1_9ACTN)

HSP 1 Score: 105 bits (262), Expect = 5.310e-25
Identity = 60/153 (39.22%), Postives = 83/153 (54.25%), Query Frame = 1
Query:    1 HDRFVRRLFAIVLA-ALALSACKVDXXXXXXXXXXXXXXXXXXALADGELVTATPGLVDDLRFEDAVAAGWTVDGPSNTTGGGLRVVLSHTFDSAAEGTALLRSINGTGGPVHDVAIALDG----SSVALTGSLRVDGGLNAFADPDVLAAIG 444
              RF+ + F  V+A  L L +C+V+                   +AD E++   P L DDLRFEDA AAGW V  P+ T  GGL+V ++HTFD+A +   LL  ++G  GP   +++   G    S+  L G L+VDGGL AFAD  +L  IG
Sbjct:    2 RSRFLNQRFVGVIALVLVLCSCQVNAVVTLDVAQSGAGSLTLNMIADSEIIEVAPNLADDLRFEDATAAGWVVSRPNKTADGGLQVSMTHTFDNAEQAGKLLAQLSGEFGPFKQMSLTRSGKDTDSTFKLDGVLQVDGGLKAFADSRLLKVIG 154          
BLAST of mRNA_P-wetherbeei_contig52102.1.1 vs. uniprot
Match: A0A2G4GD85_9ACTN (Uncharacterized protein n=2 Tax=Acidimicrobium sp. TaxID=1872112 RepID=A0A2G4GD85_9ACTN)

HSP 1 Score: 104 bits (259), Expect = 1.440e-24
Identity = 58/150 (38.67%), Postives = 80/150 (53.33%), Query Frame = 1
Query:    7 RFVRRLFAIVLAALALSACKVDXXXXXXXXXXXXXXXXXXALADGELVTATPGLVDDLRFEDAVAAGWTVDGPSNTTGGGLRVVLSHTFDSAAEGTALLRSINGTGGPVHDVAIALDG----SSVALTGSLRVDGGLNAFADPDVLAAIG 444
            + + R+ A   A + L++C+VD                    AD ++V   PGL  D+R +D VAAGW V GP++T  GGL + L+H F   AE T LL  I+GT GP+H++ I   G    S+  L G L V+GGL AFAD   L  +G
Sbjct:    4 KIITRIAASFAAVIVLASCRVDTNVTLAVKPNGTGEILVVITADKDIVVKAPGLKADIRTDDLVAAGWKVQGPTDTKDGGLTITLTHDFMGPAEATTLLGQISGTRGPLHEMVITRTGKDTNSTYTLAGRLEVNGGLEAFADDATLNLLG 153          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig52102.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 18
Match NameE-valueIdentityDescription
A0A7X9Q335_9ACTN6.280e-4252.70Uncharacterized protein n=1 Tax=Actinomycetia bact... [more]
A0A3C2BA15_9ACTN5.590e-4153.38Uncharacterized protein n=1 Tax=Acidimicrobiaceae ... [more]
A0A6I3F3C3_9ACTN1.540e-4051.35Uncharacterized protein n=2 Tax=root TaxID=1 RepID... [more]
A0A6I2VWP6_9ACTN7.250e-2842.03Uncharacterized protein (Fragment) n=1 Tax=Actinom... [more]
A0A3D0HJ40_9ACTN1.660e-2741.67Uncharacterized protein (Fragment) n=1 Tax=Acidimi... [more]
A0A4P5RDM7_9ACTN1.710e-2741.18Uncharacterized protein n=1 Tax=Actinomycetia bact... [more]
A0A6L6E1Z9_9ACTN8.660e-2742.67Uncharacterized protein n=6 Tax=root TaxID=1 RepID... [more]
A0A6L6DU37_9ACTN9.450e-2639.33Uncharacterized protein n=4 Tax=root TaxID=1 RepID... [more]
A0A356WFK1_9ACTN5.310e-2539.22Uncharacterized protein n=1 Tax=Acidimicrobium sp.... [more]
A0A2G4GD85_9ACTN1.440e-2438.67Uncharacterized protein n=2 Tax=Acidimicrobium sp.... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig52102contigP-wetherbeei_contig52102:2..445 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog1313172.YM304_37030
Model size444
Max annot lvl201174|Actinobacteria
Hectar predicted targeting categorysignal peptide
Exons1
Evalue1.59e-19
EggNOG OGs28Z32@1|root,2ZKVK@2|Bacteria,2HCTJ@201174|Actinobacteria
Cds size444
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186781.5309138-CDS-P-wetherbeei_contig52102:1..4451683186781.5309138-CDS-P-wetherbeei_contig52102:1..445Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig52102 2..445 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig52102.1.1prot_P-wetherbeei_contig52102.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig52102 2..445 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig52102.1.1

>prot_P-wetherbeei_contig52102.1.1 ID=prot_P-wetherbeei_contig52102.1.1|Name=mRNA_P-wetherbeei_contig52102.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=148bp
HDRFVRRLFAIVLAALALSACKVDVDVAVDVRADGSGTVTVTALADGELV
TATPGLVDDLRFEDAVAAGWTVDGPSNTTGGGLRVVLSHTFDSAAEGTAL
LRSINGTGGPVHDVAIALDGSSVALTGSLRVDGGLNAFADPDVLAAIG
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mRNA from alignment at P-wetherbeei_contig52102:2..445-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig52102.1.1 ID=mRNA_P-wetherbeei_contig52102.1.1|Name=mRNA_P-wetherbeei_contig52102.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=444bp|location=Sequence derived from alignment at P-wetherbeei_contig52102:2..445- (Phaeothamnion wetherbeei SAG_119_79)
CATGATCGTTTCGTGCGCCGCCTCTTCGCCATCGTTCTTGCCGCGCTCGC GCTGAGCGCGTGCAAGGTCGACGTCGACGTCGCGGTCGACGTGCGTGCCG ACGGCAGTGGCACCGTGACCGTGACCGCGCTCGCCGACGGAGAGCTGGTG ACGGCCACGCCGGGTCTGGTCGACGACCTGCGCTTCGAGGACGCGGTGGC TGCTGGCTGGACGGTGGACGGCCCGTCGAACACCACCGGTGGTGGGTTGC GCGTCGTGCTGTCCCACACGTTCGACTCCGCAGCGGAGGGCACCGCACTG CTGCGGTCCATCAACGGCACCGGCGGTCCCGTGCACGACGTGGCGATCGC ACTCGATGGTTCGTCGGTGGCCTTGACGGGATCGTTGCGCGTCGACGGTG GGCTGAACGCGTTCGCCGACCCGGACGTGCTCGCCGCGATCGGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig52102:2..445-

>mRNA_P-wetherbeei_contig52102.1.1 ID=mRNA_P-wetherbeei_contig52102.1.1|Name=mRNA_P-wetherbeei_contig52102.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=444bp|location=Sequence derived from alignment at P-wetherbeei_contig52102:2..445- (Phaeothamnion wetherbeei SAG_119_79)
CATGATCGTTTCGTGCGCCGCCTCTTCGCCATCGTTCTTGCCGCGCTCGC
GCTGAGCGCGTGCAAGGTCGACGTCGACGTCGCGGTCGACGTGCGTGCCG
ACGGCAGTGGCACCGTGACCGTGACCGCGCTCGCCGACGGAGAGCTGGTG
ACGGCCACGCCGGGTCTGGTCGACGACCTGCGCTTCGAGGACGCGGTGGC
TGCTGGCTGGACGGTGGACGGCCCGTCGAACACCACCGGTGGTGGGTTGC
GCGTCGTGCTGTCCCACACGTTCGACTCCGCAGCGGAGGGCACCGCACTG
CTGCGGTCCATCAACGGCACCGGCGGTCCCGTGCACGACGTGGCGATCGC
ACTCGATGGTTCGTCGGTGGCCTTGACGGGATCGTTGCGCGTCGACGGTG
GGCTGAACGCGTTCGCCGACCCGGACGTGCTCGCCGCGATCGGC
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