mRNA_P-wetherbeei_contig5208.2.2 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5208.2.2
Unique NamemRNA_P-wetherbeei_contig5208.2.2
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5208.2.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5208contigP-wetherbeei_contig5208:780..3099 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size1598
Hectar predicted targeting categoryother localisation
Exons3
Cds size1281
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186780.9558384-CDS-P-wetherbeei_contig5208:779..11291683186780.9558384-CDS-P-wetherbeei_contig5208:779..1129Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5208 780..1129 +
1683186780.966486-CDS-P-wetherbeei_contig5208:1432..17551683186780.966486-CDS-P-wetherbeei_contig5208:1432..1755Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5208 1433..1755 +
1683186780.9766152-CDS-P-wetherbeei_contig5208:2174..27821683186780.9766152-CDS-P-wetherbeei_contig5208:2174..2782Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5208 2175..2782 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186780.9866073-UTR-P-wetherbeei_contig5208:2782..30991683186780.9866073-UTR-P-wetherbeei_contig5208:2782..3099Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5208 2783..3099 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5208.2.2prot_P-wetherbeei_contig5208.2.2Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5208 780..2782 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5208.2.2

>prot_P-wetherbeei_contig5208.2.2 ID=prot_P-wetherbeei_contig5208.2.2|Name=mRNA_P-wetherbeei_contig5208.2.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=427bp
CIAGNDDRSVLVQVVYNSFRLFGLVTKFFWFPLVGNCVHPSFTLRLWFWL
IRQLRLTRLPLPRTRCGGLPFHIAAHFQKCSGAERCRPGAERCRSRLSVW
RGSRPRHGWNPQRQLFWRLAAAALRTGGGGCISDDGALHAGGIRRAFLCP
SSFVSRYCSYIIGIFCLQCAGRRLYCCVGFCFSAIRVLSHYPVPCSEDSP
FVTLSAKIVLFNSFSARRWGAGAEHGTDATAEASNSPALLFSNSSAGAQA
AKAAKAGGGRSPPRRRGGPDGYAGAAGAAGTAVDGADAGEDGEAEYDDDD
FDDEDAGAAEDEEGKDVEEEESLKDFDGLHGSVADLPDAVIRGGAPGAGL
STASHPAAAAVWEYGAEDGGGRAADGGISSGGGSGSGGDGDVDSSGEVSE
EDIEVERSGAMHDDVRFQMVEAVEPP*
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mRNA from alignment at P-wetherbeei_contig5208:780..3099+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5208.2.2 ID=mRNA_P-wetherbeei_contig5208.2.2|Name=mRNA_P-wetherbeei_contig5208.2.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2320bp|location=Sequence derived from alignment at P-wetherbeei_contig5208:780..3099+ (Phaeothamnion wetherbeei SAG_119_79)
TGCATCGCCGGCAACGACGACAGATCTGTGCTCGTGCAGGTGGTTTATAA
CAGTTTTCGTTTGTTTGGACTCGTCACAAAGTTTTTTTGGTTTCCCCTGG
TGGGCAACTGCGTTCACCCTTCGTTCACCCTTCGCCTTTGGTTTTGGCTC
ATTAGACAATTGCGCCTCACCCGACTTCCTCTTCCTCGCACGCGGTGCGG
CGGGCTTCCATTTCACATTGCAGCTCATTTCCAAAAGTGTTCCGGCGCCG
AGCGTTGTCGTCCCGGCGCCGAGCGTTGTCGAAGCCGGCTCAGCGTCTGG
CGTGGATCCCGGCCGAGGCACGGATGGAATCCACAGCGGCAACTCTTCTG
GTGAATCCTTGTGCTCGAAATCATACTCTATACAATCGCCCTGCTGCTAC
GGTTCAAGCTATCGTCTCGATCGGTCGCCTTCAGCGACTTTTCCCCAGAC
TGGAAATTAGCATTATGGTGTCACTTTGTGCCGCGGAACTGAAGAAGAGT
CGTATAATTTCAGCTGGCTGCCGCCGAGCCGTCGTTACTCAACTCAAGGC
GTTTACCTTAAAACTCGGCCTCGTGTAGAAACTGCAAGCACGAACGCGCA
CTAATGTTCTCGCGTTTCCCGTTCCTGTTTCTGCACATTTCTCTCGTGCG
TAGGAGGCTCGCCGCCGCGGCGCTACGCACCGGAGGCGGAGGATGCATTT
CGGATGACGGGGCACTTCACGCCGGCGGAATTCGGCGAGCCTTTCTCTGT
CCCTCTTCGTTCGTTTCCCGTTACTGTAGTTACATCATCGGAATATTTTG
CCTTCAGTGTGCTGGCCGACGCTTGTACTGTTGCGTCGGATTCTGCTTTT
CCGCCATAAGAGTTCTCTCCCACTATCCGGTTCCTTGTTCTGAAGATTCG
CCTTTTGTCACACTATCTGCTAAAATCGTTCTATTCAATTCATTTTCGGC
CAGGCGCTGGGGCGCCGGCGCAGAACGCGGAGGAGAGCGGCCAGGACTGG
CGCCGCCCGAGCTACACAGGCGCTGCATCGGAGTCGGACCGCGGCAGGTC
CGTTTCGCTTCCGCCGCGGATCTGTTGCGGCATGCAAAACGGGTTCCCCG
CAGAGCTGTGGAGCCGCTAGCCGCCATGCTGCGCGCGTTTAGATAGTTCT
CTTGTGCTGTATGAATTGAAAAATGAAACTCAATTCGTTCACCATTTTGG
TCCACTTTCGCACTTGGGAAATATCGTGGACCGACAGCGCGGCAGGGGTT
GCGCCAAAAAATGCGGCGTCTTACGGCGGGAGCGGCGGCATCGGCGATGG
CAGCGACGGCAATGGCACCACCGGCGACGGCAGTGGCGGCAGCGGCGGCG
GCAGCGGCGGCGGCAGCGGCGGGTACTTTGAGCGCGAGGGCCGAGACGGG
ACCGATGCGACGGCGGAGGCCTCCAACAGCCCGGCGCTTCTCTTTTCCAA
CAGCAGCGCCGGTGCACAAGCCGCGAAGGCCGCTAAGGCCGGCGGTGGAC
GCAGCCCTCCTCGCCGTCGTGGCGGGCCGGACGGGTATGCCGGTGCGGCG
GGGGCGGCGGGGACGGCGGTGGACGGAGCCGACGCCGGCGAGGACGGCGA
GGCAGAATACGACGACGACGATTTCGACGACGAAGACGCCGGCGCGGCAG
AAGACGAAGAAGGAAAAGATGTGGAAGAAGAGGAGAGCCTCAAAGACTTC
GATGGCCTCCATGGTAGCGTGGCGGACCTTCCGGACGCTGTCATCCGAGG
CGGCGCGCCCGGAGCCGGCCTCAGCACGGCGTCCCATCCGGCGGCGGCGG
CCGTATGGGAGTACGGTGCGGAAGACGGCGGCGGCAGAGCGGCGGACGGC
GGCATCAGCAGCGGCGGCGGCAGCGGTAGTGGCGGTGACGGCGATGTGGA
CAGCTCTGGAGAGGTGTCGGAAGAGGACATTGAGGTGGAGCGCAGCGGAG
CGATGCACGACGACGTGCGCTTCCAAATGGTTGAGGCGGTTGAGCCGCCG
TAACGGTCTTTCCGCCGAATAAACGATTCGAGAAGAGAGGAAGGAGCGGG
GCAATCGCTCTGCTATTCGGTCCGGCGTGGCCATGCTTTTGGCTCCCAGG
ACGTGCCCACCGGGCAGCAATTGATGAAGCGGCGCGGACAGGTCGGCCGC
CTCCTTGCAGCCATTTCGCACAATCGTGGGGCGGAGTGCTCGTAAGCTTG
CGACCCGGGAGAAGGGCAGCACAGTTGAAACAGAAGCGCAGTGGCAGGTC
AGACGGCGCATGCGCTCGACAGAGGAAGCAGGCAGATTCAGATTTGTAAC
ATTTAAAGCTTAAACTTAAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5208:780..3099+

>mRNA_P-wetherbeei_contig5208.2.2 ID=mRNA_P-wetherbeei_contig5208.2.2|Name=mRNA_P-wetherbeei_contig5208.2.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1281bp|location=Sequence derived from alignment at P-wetherbeei_contig5208:780..3099+ (Phaeothamnion wetherbeei SAG_119_79)
TGCATCGCCGGCAACGACGACAGATCTGTGCTCGTGCAGGTGGTTTATAA
CAGTTTTCGTTTGTTTGGACTCGTCACAAAGTTTTTTTGGTTTCCCCTGG
TGGGCAACTGCGTTCACCCTTCGTTCACCCTTCGCCTTTGGTTTTGGCTC
ATTAGACAATTGCGCCTCACCCGACTTCCTCTTCCTCGCACGCGGTGCGG
CGGGCTTCCATTTCACATTGCAGCTCATTTCCAAAAGTGTTCCGGCGCCG
AGCGTTGTCGTCCCGGCGCCGAGCGTTGTCGAAGCCGGCTCAGCGTCTGG
CGTGGATCCCGGCCGAGGCACGGATGGAATCCACAGCGGCAACTCTTCTG
GAGGCTCGCCGCCGCGGCGCTACGCACCGGAGGCGGAGGATGCATTTCGG
ATGACGGGGCACTTCACGCCGGCGGAATTCGGCGAGCCTTTCTCTGTCCC
TCTTCGTTCGTTTCCCGTTACTGTAGTTACATCATCGGAATATTTTGCCT
TCAGTGTGCTGGCCGACGCTTGTACTGTTGCGTCGGATTCTGCTTTTCCG
CCATAAGAGTTCTCTCCCACTATCCGGTTCCTTGTTCTGAAGATTCGCCT
TTTGTCACACTATCTGCTAAAATCGTTCTATTCAATTCATTTTCGGCCAG
GCGCTGGGGCGCCGGCGCAGAACACGGGACCGATGCGACGGCGGAGGCCT
CCAACAGCCCGGCGCTTCTCTTTTCCAACAGCAGCGCCGGTGCACAAGCC
GCGAAGGCCGCTAAGGCCGGCGGTGGACGCAGCCCTCCTCGCCGTCGTGG
CGGGCCGGACGGGTATGCCGGTGCGGCGGGGGCGGCGGGGACGGCGGTGG
ACGGAGCCGACGCCGGCGAGGACGGCGAGGCAGAATACGACGACGACGAT
TTCGACGACGAAGACGCCGGCGCGGCAGAAGACGAAGAAGGAAAAGATGT
GGAAGAAGAGGAGAGCCTCAAAGACTTCGATGGCCTCCATGGTAGCGTGG
CGGACCTTCCGGACGCTGTCATCCGAGGCGGCGCGCCCGGAGCCGGCCTC
AGCACGGCGTCCCATCCGGCGGCGGCGGCCGTATGGGAGTACGGTGCGGA
AGACGGCGGCGGCAGAGCGGCGGACGGCGGCATCAGCAGCGGCGGCGGCA
GCGGTAGTGGCGGTGACGGCGATGTGGACAGCTCTGGAGAGGTGTCGGAA
GAGGACATTGAGGTGGAGCGCAGCGGAGCGATGCACGACGACGTGCGCTT
CCAAATGGTTGAGGCGGTTGAGCCGCCGTAA
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