mRNA_P-wetherbeei_contig52045.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig52045.1.1
Unique NamemRNA_P-wetherbeei_contig52045.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig52045.1.1 vs. uniprot
Match: A0A1J5BLT8_9PROT (Uncharacterized protein n=5 Tax=Betaproteobacteria TaxID=28216 RepID=A0A1J5BLT8_9PROT)

HSP 1 Score: 148 bits (374), Expect = 2.570e-39
Identity = 75/134 (55.97%), Postives = 90/134 (67.16%), Query Frame = 1
Query:   31 AGRIVFAKGVVLAQQAAGAPRLLGSDSQLFEGDLLSAARNGFAVIEFTDGSRMTVRPATALRISRYAHAQADESIALQLLRGGLRAVTGLITKRNPDGFRIRTATATVGIRGTDFDIRLCDEDCGAEARALAPA 432
            AGR+VFA+G+  AQ+A  APR +     L EGD +S    GFAVI   DG++ T+RP T   I RY H   +ES  L+L +GGLRAVTGLI KRNP G ++ TATAT+GIRGTDFD RLCD DC  E   L PA
Sbjct:   38 AGRVVFAQGITTAQRAGAAPRFVAKGDALEEGDTISTGSRGFAVIGLKDGAKYTLRPRTVFAIERYRHDAGEESALLRLFKGGLRAVTGLIGKRNPTGVQLATATATIGIRGTDFDARLCDLDCEQELALLPPA 171          
BLAST of mRNA_P-wetherbeei_contig52045.1.1 vs. uniprot
Match: A0A4Z0BYG1_9BURK (Uncharacterized protein n=1 Tax=Ramlibacter rhizophilus TaxID=1781167 RepID=A0A4Z0BYG1_9BURK)

HSP 1 Score: 147 bits (371), Expect = 4.100e-39
Identity = 75/153 (49.02%), Postives = 101/153 (66.01%), Query Frame = 1
Query:   31 AGRIVFAKGVVLAQQAAGAPRLLGSDSQLFEGDLLSAARNGFAVIEFTDGSRMTVRPATALRISRYAHAQADESIALQLLRGGLRAVTGLITKRNPDGFRIRTATATVGIRGTDFDIRLCDEDCGAEARALAPAAPPH--ARVIGRVVLTSGQ 483
            AG++   +G+  AQQ  G+ R LG    + EGD L+    GFAV+ F DGS+ T+RP++A  + R+AH +  E+  L+LL+GG+R VTGL+ KRNP G  +RT TAT+GIRGT FD RLC +DC +E+ A A AAPP     V  RVV  +GQ
Sbjct:   36 AGQVTHVQGMATAQQPDGSFRFLGQGDAVLEGDTLATTERGFAVLTFRDGSKYTLRPSSAFTVERFAHGEGQEAAWLKLLKGGVRVVTGLVGKRNPAGVELRTPTATIGIRGTSFDARLCGDDCRSESAATAGAAPPAPVVPVAARVVQLNGQ 188          
BLAST of mRNA_P-wetherbeei_contig52045.1.1 vs. uniprot
Match: A0A6N8IS99_9BURK (Uncharacterized protein n=1 Tax=Ramlibacter pinisoli TaxID=2682844 RepID=A0A6N8IS99_9BURK)

HSP 1 Score: 142 bits (358), Expect = 1.980e-37
Identity = 75/164 (45.73%), Postives = 112/164 (68.29%), Query Frame = 1
Query:    1 MQGASAQVELAGRIVFAKGVVLAQQAAGAPRLLGSDSQLFEGDLLSAARNGFAVIEFTDGSRMTVRPATALRISRYAHAQ--ADESIALQLLRGGLRAVTGLITKRNPDGFRIRTATATVGIRGTDFDIRLCDEDCGAEARALAPAAPPHARVIG-RVVLTSGQ 483
            + G+ A  ++AG + FA+GV  AQ    APR LG   +L EGD L+ A    A+++  DG+RMTVRP + + + +Y   +  +D S+ LQ++RGG RAVTGLI+K +P+  R++T+TAT+GIRGTDFD RLC  DCGAE+  +A +A P+A +   +VV ++G+
Sbjct:   21 LAGSLASAQVAGEVEFARGVGFAQTPGQAPRTLGKGLELREGDRLTTAEGSSAIVKLQDGTRMTVRPNSEIVLQQYQFRENGSDNSMLLQMVRGGFRAVTGLISKGSPNAARVQTSTATIGIRGTDFDARLCTRDCGAESAQVAESARPNAVLASAKVVQSAGE 184          
BLAST of mRNA_P-wetherbeei_contig52045.1.1 vs. uniprot
Match: A0A7C2YV09_9PROT (Uncharacterized protein n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A7C2YV09_9PROT)

HSP 1 Score: 141 bits (355), Expect = 1.920e-36
Identity = 68/151 (45.03%), Postives = 97/151 (64.24%), Query Frame = 1
Query:   31 AGRIVFAKGVVLAQQAAGAPRLLGSDSQLFEGDLLSAARNGFAVIEFTDGSRMTVRPATALRISRYAHAQADESIALQLLRGGLRAVTGLITKRNPDGFRIRTATATVGIRGTDFDIRLCDEDCGAEARALAPAAPPHAR-VIGRVVLTSG 480
            AG +++A G+   Q+A   PR +     + EGD++S    GFAVI   DGS+MT+RP T+  + +++H   +E+   +L++GG+R +TGLI KRNP G R+ TATAT+GIRGT FD RLC++DC  E R      PP A  ++ RVVL  G
Sbjct:  116 AGEVIYAHGITSVQRAGEPPRFVTKGDSINEGDIISTGPKGFAVIGLKDGSKMTLRPDTSFAVEKFSHGGKEEAGFFRLVKGGVRTITGLIGKRNPQGMRVSTATATIGIRGTSFDARLCEDDCAKEIRVGRKDVPPSAELIVARVVLHEG 266          
BLAST of mRNA_P-wetherbeei_contig52045.1.1 vs. uniprot
Match: A0A4Y7B8P1_9BURK (Uncharacterized protein n=1 Tax=Ramlibacter sp. WS9 TaxID=1882741 RepID=A0A4Y7B8P1_9BURK)

HSP 1 Score: 139 bits (350), Expect = 3.280e-36
Identity = 77/163 (47.24%), Postives = 104/163 (63.80%), Query Frame = 1
Query:    1 MQGASAQVELAGRIVFAKGVVLAQQAAGAPRLLGSDSQLFEGDLLSAARNGFAVIEFTDGSRMTVRPATALRISRYAHAQ--ADESIALQLLRGGLRAVTGLITKRNPDGFRIRTATATVGIRGTDFDIRLCDEDCGAEARALAPAAPPHA-RVIGRVVLTSG 480
            +  A A  + AG + F++GV  AQ     PR LG    L EGD L+ +    A+I+  DG+RMTVRP + L + +Y   +   D ++ +QLLRGG RAVTGLITK +P+  RI+T TAT+GIRGTDFD R+C  DCGAEA  +A AA P+A R   ++V + G
Sbjct:   22 LAAAGASAQNAGEVEFSRGVGFAQAPGQTPRTLGKGLPLREGDRLTTSEGASAIIKLDDGTRMTVRPNSDLVLQQYRFKENAPDNTLLMQLLRGGFRAVTGLITKNSPNAARIQTNTATIGIRGTDFDARVCARDCGAEASRVAAAARPNAVRASAKIVTSEG 184          
BLAST of mRNA_P-wetherbeei_contig52045.1.1 vs. uniprot
Match: A0A2N2VC45_9PROT (Uncharacterized protein n=1 Tax=Betaproteobacteria bacterium HGW-Betaproteobacteria-12 TaxID=2013703 RepID=A0A2N2VC45_9PROT)

HSP 1 Score: 139 bits (350), Expect = 4.590e-36
Identity = 70/156 (44.87%), Postives = 96/156 (61.54%), Query Frame = 1
Query:   34 GRIVFAKGVVLAQQAAGAPRLLGSDSQLFEGDLLSAARNGFAVIEFTDGSRMTVRPATALRISRYAHAQADESIALQLLRGGLRAVTGLITKRNPDGFRIRTATATVGIRGTDFDIRLCDEDCGAEARALAPA------APPHARVIGRVVLTSGQ 483
            G++ FA+G+  AQQ     R +     L EGDL++    G+AV+   DG+++T+RP TA +I ++AH Q  ES  L+LL+GG+RA+TGLI KRNP G R+ +  AT+GIRGT FD RLC  DC  E R   P        P    V+GR+V  SG+
Sbjct:   27 GKVEFAQGLATAQQKGAEARFITGGEPLLEGDLITTTDKGYAVLALADGTKVTLRPGTAFQIDQFAHGQGTESALLRLLKGGMRAITGLIGKRNPGGVRVSSVIATIGIRGTSFDARLCGSDCRDEQRGNRPQPGQGAPVPAPDTVVGRIVRISGE 182          
BLAST of mRNA_P-wetherbeei_contig52045.1.1 vs. uniprot
Match: A0A7X6DHK1_9BURK (Uncharacterized protein n=1 Tax=Ramlibacter lithotrophicus TaxID=2606681 RepID=A0A7X6DHK1_9BURK)

HSP 1 Score: 138 bits (348), Expect = 6.490e-36
Identity = 69/151 (45.70%), Postives = 102/151 (67.55%), Query Frame = 1
Query:    1 MQGASAQVELAGRIVFAKGVVLAQQAAGAPRLLGSDSQLFEGDLLSAARNGFAVIEFTDGSRMTVRPATALRISRYAHAQ--ADESIALQLLRGGLRAVTGLITKRNPDGFRIRTATATVGIRGTDFDIRLCDEDCGAEARALAPAAPPHA 447
            +  + AQ + AG + F++GV  AQ     PR+LG    L +GD ++ + NG A+I+  DG+RMTVRP++ L + +Y   +   D S+ +QL+RGG RAVTGLI K  PD  +++T+TAT+GIRGTDFD RLC  +CGAE+  ++ +A P+A
Sbjct:   20 LAASGAQAQAAGEVEFSRGVGFAQTGTQTPRILGKGLPLQQGDRVTTSENGSAIIKMADGTRMTVRPSSELVLQQYQFKENATDNSMLMQLVRGGFRAVTGLIAKSGPDAAKVQTSTATIGIRGTDFDARLCAGECGAESARVSASARPNA 170          
BLAST of mRNA_P-wetherbeei_contig52045.1.1 vs. uniprot
Match: A0A4Z0BXP6_9BURK (Uncharacterized protein n=1 Tax=Ramlibacter henchirensis TaxID=204072 RepID=A0A4Z0BXP6_9BURK)

HSP 1 Score: 138 bits (347), Expect = 8.070e-36
Identity = 75/161 (46.58%), Postives = 104/161 (64.60%), Query Frame = 1
Query:    1 MQGASAQVELAGRIVFAKGVVLAQQAAGAPRLLGSDSQLFEGDLLSAARNGFAVIEFTDGSRMTVRPATALRISRYAHAQ--ADESIALQLLRGGLRAVTGLITKRNPDGFRIRTATATVGIRGTDFDIRLCDEDCGAEARALAPAAPPHARVIGRVVLTS 477
            + G++A  + AG + FA+GV  AQ    APR LG    L EGD L+ +    A++   DG+RMTVRP + + IS+Y   +   D  + LQ++RGG RAVTGLI+K +P+  RI+T+TAT+GIRGTDFD RLC  DCGAEA  +  +A P+A +    V+ S
Sbjct:   21 LAGSTALAQSAGEVEFARGVGFAQAPGQAPRTLGKGLPLREGDRLTTSEGASAIVRLEDGTRMTVRPNSEIVISQYQFRENAPDNGMLLQMIRGGFRAVTGLISKGSPNAARIQTSTATIGIRGTDFDARLCSVDCGAEAARVQESARPNAVLASAKVVQS 181          
BLAST of mRNA_P-wetherbeei_contig52045.1.1 vs. uniprot
Match: A0A519JK40_9GAMM (Uncharacterized protein (Fragment) n=1 Tax=Haliea sp. TaxID=1932666 RepID=A0A519JK40_9GAMM)

HSP 1 Score: 135 bits (341), Expect = 8.360e-36
Identity = 73/151 (48.34%), Postives = 98/151 (64.90%), Query Frame = 1
Query:    1 MQGASAQVELAGRIVFAKGVVLAQQAAGAPRLLGSDSQLFEGDLLSAARNGFAVIEFTDGSRMTVRPATALRISRYAHAQ--ADESIALQLLRGGLRAVTGLITKRNPDGFRIRTATATVGIRGTDFDIRLCDEDCGAEARALAPAAPPHA 447
            M  AS   + AG + FA+GV  AQ     PR LG    L EGD L+ +  G A+I   DG+RMTVRP + L + ++ + +  +D S+ +QL+RGG RAVTGLI K +P+  RI+TATAT+GIRGTDFD R+C  DCGAE+  +   A P+A
Sbjct:   21 MVSASTVAQTAGEVEFARGVGFAQTQGQTPRTLGKGLALREGDRLTTSDGGSAIIRLGDGTRMTVRPNSELVLQQFQYRENASDNSMLMQLVRGGFRAVTGLIAKASPNAARIQTATATIGIRGTDFDARICTTDCGAESARIPERARPNA 171          
BLAST of mRNA_P-wetherbeei_contig52045.1.1 vs. uniprot
Match: A0A4Z0BQC8_9BURK (Uncharacterized protein n=1 Tax=Ramlibacter henchirensis TaxID=204072 RepID=A0A4Z0BQC8_9BURK)

HSP 1 Score: 137 bits (345), Expect = 1.600e-35
Identity = 73/159 (45.91%), Postives = 104/159 (65.41%), Query Frame = 1
Query:    7 GASAQVELAGRIVFAKGVVLAQQAAGAPRLLGSDSQLFEGDLLSAARNGFAVIEFTDGSRMTVRPATALRISRYAHAQ--ADESIALQLLRGGLRAVTGLITKRNPDGFRIRTATATVGIRGTDFDIRLCDEDCGAEARALAPAAPPHARVIGRVVLTS 477
            G +A  + AG + FA+GV  AQ     PR LG    L EGD L+ +    A++   DG+RMTVRP + L I++Y + +  +D ++ LQ++RGG RAVTGLI+K  P+  +++T+TAT+GIRGTDFD RLC  DCGAEA  +A +A P+A +    V+ S
Sbjct:   23 GGAALAQSAGEVEFARGVGFAQSPGQPPRTLGKGLPLSEGDRLTTSDGASAILRLEDGTRMTVRPNSELVITQYRYRENASDNNMLLQMVRGGFRAVTGLISKNAPNAAKVQTSTATIGIRGTDFDARLCSRDCGAEAARVAESARPNAVLASAKVVQS 181          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig52045.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1J5BLT8_9PROT2.570e-3955.97Uncharacterized protein n=5 Tax=Betaproteobacteria... [more]
A0A4Z0BYG1_9BURK4.100e-3949.02Uncharacterized protein n=1 Tax=Ramlibacter rhizop... [more]
A0A6N8IS99_9BURK1.980e-3745.73Uncharacterized protein n=1 Tax=Ramlibacter piniso... [more]
A0A7C2YV09_9PROT1.920e-3645.03Uncharacterized protein n=1 Tax=Betaproteobacteria... [more]
A0A4Y7B8P1_9BURK3.280e-3647.24Uncharacterized protein n=1 Tax=Ramlibacter sp. WS... [more]
A0A2N2VC45_9PROT4.590e-3644.87Uncharacterized protein n=1 Tax=Betaproteobacteria... [more]
A0A7X6DHK1_9BURK6.490e-3645.70Uncharacterized protein n=1 Tax=Ramlibacter lithot... [more]
A0A4Z0BXP6_9BURK8.070e-3646.58Uncharacterized protein n=1 Tax=Ramlibacter henchi... [more]
A0A519JK40_9GAMM8.360e-3648.34Uncharacterized protein (Fragment) n=1 Tax=Haliea ... [more]
A0A4Z0BQC8_9BURK1.600e-3545.91Uncharacterized protein n=1 Tax=Ramlibacter henchi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig52045contigP-wetherbeei_contig52045:63..545 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog946483.Cenrod_0211
PFAMsFecR
Model size483
Max annot lvl28216|Betaproteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.61e-33
EggNOG OGsCOG4254@1|root,COG4254@2|Bacteria,1NBPR@1224|Proteobacteria,2VWWI@28216|Betaproteobacteria,4AH9S@80864|Comamonadaceae
DescriptionFecR protein
Cds size483
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186780.6664765-CDS-P-wetherbeei_contig52045:62..5451683186780.6664765-CDS-P-wetherbeei_contig52045:62..545Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig52045 63..545 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig52045.1.1prot_P-wetherbeei_contig52045.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig52045 63..545 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig52045.1.1

>prot_P-wetherbeei_contig52045.1.1 ID=prot_P-wetherbeei_contig52045.1.1|Name=mRNA_P-wetherbeei_contig52045.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=161bp
MQGASAQVELAGRIVFAKGVVLAQQAAGAPRLLGSDSQLFEGDLLSAARN
GFAVIEFTDGSRMTVRPATALRISRYAHAQADESIALQLLRGGLRAVTGL
ITKRNPDGFRIRTATATVGIRGTDFDIRLCDEDCGAEARALAPAAPPHAR
VIGRVVLTSGQ
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mRNA from alignment at P-wetherbeei_contig52045:63..545+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig52045.1.1 ID=mRNA_P-wetherbeei_contig52045.1.1|Name=mRNA_P-wetherbeei_contig52045.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=483bp|location=Sequence derived from alignment at P-wetherbeei_contig52045:63..545+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCAGGGAGCAAGCGCACAGGTTGAGCTGGCGGGCCGGATCGTATTTGC CAAGGGAGTTGTGTTGGCCCAGCAAGCCGCAGGGGCGCCGCGGCTGCTGG GCAGCGACAGCCAGTTGTTTGAAGGCGATCTGCTGTCGGCCGCGCGCAAT GGATTCGCGGTGATCGAGTTCACCGATGGCAGCCGCATGACCGTGCGCCC GGCGACTGCCCTGCGCATCAGCCGCTATGCGCACGCCCAGGCCGACGAAA GCATCGCACTGCAATTGTTGCGTGGCGGCTTGCGTGCGGTCACCGGTCTC ATAACCAAGCGCAATCCCGACGGATTCCGCATCCGCACCGCTACGGCAAC CGTGGGCATTCGCGGTACCGATTTCGATATCCGCCTGTGTGACGAAGACT GCGGCGCCGAGGCAAGGGCGCTGGCACCGGCCGCGCCGCCGCACGCGCGC GTGATCGGGCGGGTCGTCCTGACCAGTGGCCAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig52045:63..545+

>mRNA_P-wetherbeei_contig52045.1.1 ID=mRNA_P-wetherbeei_contig52045.1.1|Name=mRNA_P-wetherbeei_contig52045.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=483bp|location=Sequence derived from alignment at P-wetherbeei_contig52045:63..545+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCAGGGAGCAAGCGCACAGGTTGAGCTGGCGGGCCGGATCGTATTTGC
CAAGGGAGTTGTGTTGGCCCAGCAAGCCGCAGGGGCGCCGCGGCTGCTGG
GCAGCGACAGCCAGTTGTTTGAAGGCGATCTGCTGTCGGCCGCGCGCAAT
GGATTCGCGGTGATCGAGTTCACCGATGGCAGCCGCATGACCGTGCGCCC
GGCGACTGCCCTGCGCATCAGCCGCTATGCGCACGCCCAGGCCGACGAAA
GCATCGCACTGCAATTGTTGCGTGGCGGCTTGCGTGCGGTCACCGGTCTC
ATAACCAAGCGCAATCCCGACGGATTCCGCATCCGCACCGCTACGGCAAC
CGTGGGCATTCGCGGTACCGATTTCGATATCCGCCTGTGTGACGAAGACT
GCGGCGCCGAGGCAAGGGCGCTGGCACCGGCCGCGCCGCCGCACGCGCGC
GTGATCGGGCGGGTCGTCCTGACCAGTGGCCAG
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