mRNA_P-wetherbeei_contig52042.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
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Overview
Homology
BLAST of mRNA_P-wetherbeei_contig52042.1.1 vs. uniprot
Match: UPI001FF9FEA4 (hypothetical protein n=1 Tax=unclassified Bradyrhizobium TaxID=2631580 RepID=UPI001FF9FEA4) HSP 1 Score: 93.2 bits (230), Expect = 3.560e-23 Identity = 42/82 (51.22%), Postives = 59/82 (71.95%), Query Frame = 1
Query: 4 VFPFSNVLGAILLLSHSHDLNNQQEALLMELSHLGIGLFALAAGCARWLEIRAGGTIARICAWIWPLSFIGLGLVLLFYRES 249
+FP + LG LLL+HSH + N ++ LL+E+SH + L +AAG ARWLE+R G + + AWIWP++FI +GLVLL YRE+
Sbjct: 1 MFPLTTALGGALLLTHSHAIANIKDQLLIEMSHTPLALCGIAAGWARWLELRLDGRVRNVAAWIWPVAFILVGLVLLDYREA 82
BLAST of mRNA_P-wetherbeei_contig52042.1.1 vs. uniprot
Match: A0A1G6QIH5_9PROT (Putative copper resistance protein D n=7 Tax=Acetobacteraceae TaxID=433 RepID=A0A1G6QIH5_9PROT) HSP 1 Score: 98.2 bits (243), Expect = 4.410e-22 Identity = 43/83 (51.81%), Postives = 61/83 (73.49%), Query Frame = 1
Query: 1 YVFPFSNVLGAILLLSHSHDLNNQQEALLMELSHLGIGLFALAAGCARWLEIRAGGTIARICAWIWPLSFIGLGLVLLFYRES 249
+VFP + + G +LLL+H+H ++N +EA L+ELSHL + L A+ AGCARW E+R +ARI W+WP IG+GL+LL YRE+
Sbjct: 469 FVFPLAMLAGGVLLLAHTHAISNIKEAQLIELSHLPLALLAVVAGCARWTELRGPPELARIGRWLWPACLIGIGLLLLLYREA 551
BLAST of mRNA_P-wetherbeei_contig52042.1.1 vs. uniprot
Match: A0A5M6IZZ0_9PROT (Copper resistance protein n=1 Tax=Rhodovastum atsumiense TaxID=504468 RepID=A0A5M6IZZ0_9PROT) HSP 1 Score: 97.1 bits (240), Expect = 1.130e-21 Identity = 44/83 (53.01%), Postives = 59/83 (71.08%), Query Frame = 1
Query: 1 YVFPFSNVLGAILLLSHSHDLNNQQEALLMELSHLGIGLFALAAGCARWLEIRAGGTIARICAWIWPLSFIGLGLVLLFYRES 249
YVFP +G LL+HSH ++N +E LL+EL+H + LF +AAG ARWLE+R G ARI AW+WP+ F+ +GL LL YRE+
Sbjct: 467 YVFPIVCAIGGAALLTHSHAISNVKEQLLIELTHTPLALFGVAAGWARWLELRLDGRAARIAAWVWPICFVLVGLTLLNYREA 549
BLAST of mRNA_P-wetherbeei_contig52042.1.1 vs. uniprot
Match: UPI001FD76762 (CopD family protein n=1 Tax=Bradyrhizobium vignae TaxID=1549949 RepID=UPI001FD76762) HSP 1 Score: 94.0 bits (232), Expect = 4.990e-21 Identity = 42/82 (51.22%), Postives = 59/82 (71.95%), Query Frame = 1
Query: 4 VFPFSNVLGAILLLSHSHDLNNQQEALLMELSHLGIGLFALAAGCARWLEIRAGGTIARICAWIWPLSFIGLGLVLLFYRES 249
VFP + LG LLL+HSH + N ++ LL+E+SH + L +AAG ARWLE+R G + + AWIWP++F+ +GLVLL YRE+
Sbjct: 271 VFPLTTALGGALLLTHSHAIANIKDQLLIEMSHTPLALCGIAAGWARWLELRLDGRVREVAAWIWPVAFVLVGLVLLDYREA 352
BLAST of mRNA_P-wetherbeei_contig52042.1.1 vs. uniprot
Match: UPI001082179F (CopD family protein n=1 Tax=Crenalkalicoccus roseus TaxID=1485588 RepID=UPI001082179F) HSP 1 Score: 94.7 bits (234), Expect = 7.590e-21 Identity = 44/83 (53.01%), Postives = 58/83 (69.88%), Query Frame = 1
Query: 1 YVFPFSNVLGAILLLSHSHDLNNQQEALLMELSHLGIGLFALAAGCARWLEIRAGGTIARICAWIWPLSFIGLGLVLLFYRES 249
YVFP S + G +LLLSH+H L N +EALL+ELSHL + +FAL AGCARW E+R +A WIWP+ + G +L+ YRE+
Sbjct: 483 YVFPLSMLTGGVLLLSHTHALANYKEALLIELSHLPLAVFALVAGCARWTELRGPRALAVRARWIWPVCLLLTGYMLVTYREA 565
BLAST of mRNA_P-wetherbeei_contig52042.1.1 vs. uniprot
Match: A0A176Y8H5_9BRAD (Copper resistance protein n=1 Tax=Bradyrhizobium centrolobii TaxID=1505087 RepID=A0A176Y8H5_9BRAD) HSP 1 Score: 94.4 bits (233), Expect = 1.020e-20 Identity = 41/82 (50.00%), Postives = 61/82 (74.39%), Query Frame = 1
Query: 4 VFPFSNVLGAILLLSHSHDLNNQQEALLMELSHLGIGLFALAAGCARWLEIRAGGTIARICAWIWPLSFIGLGLVLLFYRES 249
VFP + LG LLL+HSH + N ++ LL+E+SH + L +AAG ARWLE+R G ++R+ +WIWP++F+ +GL+LL YRE+
Sbjct: 470 VFPLTTALGGALLLTHSHAIANIKDQLLIEMSHTPLALCGVAAGWARWLELRLDGRVSRLASWIWPVAFVLVGLILLDYREA 551
BLAST of mRNA_P-wetherbeei_contig52042.1.1 vs. uniprot
Match: A0A0E4BLR0_9BRAD (CopD domain-containing protein n=17 Tax=Bradyrhizobium TaxID=374 RepID=A0A0E4BLR0_9BRAD) HSP 1 Score: 94.0 bits (232), Expect = 1.400e-20 Identity = 43/82 (52.44%), Postives = 59/82 (71.95%), Query Frame = 1
Query: 4 VFPFSNVLGAILLLSHSHDLNNQQEALLMELSHLGIGLFALAAGCARWLEIRAGGTIARICAWIWPLSFIGLGLVLLFYRES 249
VFP + LG LLL+HSH + N ++ LL+E+SH + L +AAG ARWLE+R G + R AWIWP++FI +GL+LL YRE+
Sbjct: 470 VFPLTTALGGALLLAHSHAIANIKDQLLIEMSHTPLALCGVAAGWARWLELRLDGRVRRAAAWIWPVAFILVGLILLDYREA 551
BLAST of mRNA_P-wetherbeei_contig52042.1.1 vs. uniprot
Match: A0A2U3Q6F9_9BRAD (CopD domain-containing protein n=10 Tax=Bradyrhizobiaceae TaxID=41294 RepID=A0A2U3Q6F9_9BRAD) HSP 1 Score: 94.0 bits (232), Expect = 1.400e-20 Identity = 42/82 (51.22%), Postives = 59/82 (71.95%), Query Frame = 1
Query: 4 VFPFSNVLGAILLLSHSHDLNNQQEALLMELSHLGIGLFALAAGCARWLEIRAGGTIARICAWIWPLSFIGLGLVLLFYRES 249
VFP + LG LLL+HSH + N ++ LL+E+SH + L +AAG ARWLE+R G + + AWIWP++F+ +GLVLL YRE+
Sbjct: 470 VFPLTTALGGALLLTHSHAIANIKDQLLIEMSHTPLALCGIAAGWARWLELRLDGRVREVAAWIWPVAFVLVGLVLLDYREA 551
BLAST of mRNA_P-wetherbeei_contig52042.1.1 vs. uniprot
Match: UPI001C6BD2F1 (Copper resistance protein n=1 Tax=Bradyrhizobium sp. BR 10289 TaxID=2749993 RepID=UPI001C6BD2F1) HSP 1 Score: 89.7 bits (221), Expect = 2.310e-20 Identity = 39/82 (47.56%), Postives = 58/82 (70.73%), Query Frame = 1
Query: 4 VFPFSNVLGAILLLSHSHDLNNQQEALLMELSHLGIGLFALAAGCARWLEIRAGGTIARICAWIWPLSFIGLGLVLLFYRES 249
VFP LG LLL+HSH + N ++ LL+E+SH + L + AG ARWLE+R G + ++ AW+WP++F+ +GL+LL YRE+
Sbjct: 133 VFPLVTALGGALLLTHSHAIANIKDQLLIEMSHTPLALCGVLAGWARWLELRMDGRVRQVAAWVWPVAFLLVGLILLDYREA 214
BLAST of mRNA_P-wetherbeei_contig52042.1.1 vs. uniprot
Match: H0TZC4_9BRAD (Putative Copper resistance protein, copD family n=1 Tax=Bradyrhizobium sp. STM 3843 TaxID=551947 RepID=H0TZC4_9BRAD) HSP 1 Score: 91.7 bits (226), Expect = 9.190e-20 Identity = 39/82 (47.56%), Postives = 60/82 (73.17%), Query Frame = 1
Query: 4 VFPFSNVLGAILLLSHSHDLNNQQEALLMELSHLGIGLFALAAGCARWLEIRAGGTIARICAWIWPLSFIGLGLVLLFYRES 249
VFP + +G LL++HSH + N ++ LL+E+SH + L + AG ARWLE+R G I+R+ AW+WP++F+ +GL+LL YRE+
Sbjct: 471 VFPLTVAVGGALLMTHSHAIANIKDQLLIEMSHTPLALCGMTAGWARWLELRLQGRISRVAAWVWPIAFVLVGLILLDYREA 552 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig52042.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig52042.1.1 >prot_P-wetherbeei_contig52042.1.1 ID=prot_P-wetherbeei_contig52042.1.1|Name=mRNA_P-wetherbeei_contig52042.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=84bp YVFPFSNVLGAILLLSHSHDLNNQQEALLMELSHLGIGLFALAAGCARWLback to top mRNA from alignment at P-wetherbeei_contig52042:8..259+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig52042.1.1 ID=mRNA_P-wetherbeei_contig52042.1.1|Name=mRNA_P-wetherbeei_contig52042.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=252bp|location=Sequence derived from alignment at P-wetherbeei_contig52042:8..259+ (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig52042:8..259+ >mRNA_P-wetherbeei_contig52042.1.1 ID=mRNA_P-wetherbeei_contig52042.1.1|Name=mRNA_P-wetherbeei_contig52042.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=252bp|location=Sequence derived from alignment at P-wetherbeei_contig52042:8..259+ (Phaeothamnion wetherbeei SAG_119_79)back to top |