mRNA_P-wetherbeei_contig51922.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig51922.1.1
Unique NamemRNA_P-wetherbeei_contig51922.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig51922.1.1 vs. uniprot
Match: A0A7C3JQC6_9PROT (Tripartite tricarboxylate transporter substrate binding protein n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A7C3JQC6_9PROT)

HSP 1 Score: 136 bits (343), Expect = 5.360e-37
Identity = 62/114 (54.39%), Postives = 88/114 (77.19%), Query Frame = 1
Query:    1 VPHMKTGRLRVLAIGSPKRSPTLPEVPTVAEAGVPGFDFDSWTGYLAPTGTPKEIITKLHTDITRTLGLPEVKDKLTTLGFDLVGGTPEAFAALIKTDIARFGKLIKAAGIQAE 342
            +PH +TGRLR+LA    +R+   PE+PT+AE+GVPG+DF+SWTG+LAPTGTP +II++L+ ++ R   LPE  ++L+ +GFDLVG +P  F A IK +IAR GK+++ A IQAE
Sbjct:  210 LPHHRTGRLRILATAGAQRTNAAPELPTIAESGVPGYDFNSWTGFLAPTGTPADIISRLNAEVVRITRLPETSERLSAVGFDLVGSSPAEFGAHIKANIARIGKVVREANIQAE 323          
BLAST of mRNA_P-wetherbeei_contig51922.1.1 vs. uniprot
Match: A0A1F4E310_9PROT (Uncharacterized protein n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_62_58 TaxID=1797497 RepID=A0A1F4E310_9PROT)

HSP 1 Score: 130 bits (328), Expect = 8.190e-35
Identity = 60/113 (53.10%), Postives = 82/113 (72.57%), Query Frame = 1
Query:    1 VPHMKTGRLRVLAIGSPKRSPTLPEVPTVAEAGVPGFDFDSWTGYLAPTGTPKEIITKLHTDITRTLGLPEVKDKLTTLGFDLVGGTPEAFAALIKTDIARFGKLIKAAGIQA 339
            +PH++ G+LR LA+ S KRSP++PE+PTVAEA +PGF  D W G  AP GTPKEI+ KLH +I R +  P+ K +L TLG D V  TP+ F A +KT+  ++GKL++ AGI+A
Sbjct:  205 MPHVRGGKLRALAVSSAKRSPSVPELPTVAEAALPGFAVDQWYGLFAPAGTPKEIVAKLHGEIARLVAQPDAKQRLLTLGLDPVASTPDEFTAYVKTETVKWGKLVREAGIRA 317          
BLAST of mRNA_P-wetherbeei_contig51922.1.1 vs. uniprot
Match: A0A1F4DII2_9PROT (Uncharacterized protein n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_62_58 TaxID=1797497 RepID=A0A1F4DII2_9PROT)

HSP 1 Score: 130 bits (327), Expect = 1.200e-34
Identity = 59/115 (51.30%), Postives = 85/115 (73.91%), Query Frame = 1
Query:    1 VPHMKTGRLRVLAIGSPKRSPTLPEVPTVAEAGVPGFDFDSWTGYLAPTGTPKEIITKLHTDITRTLGLPEVKDKLTTLGFD-LVGGTPEAFAALIKTDIARFGKLIKAAGIQAE 342
            +PHM++G+LR L +  PKRS + P++PT+AEAGVPG++   W G LAP GTPK +ITK+H D+ + L  PE++ KL ++G D +VGGTP   AA IK + A++ KL+KAAG++ E
Sbjct:  206 LPHMQSGKLRGLGVTGPKRSASAPQLPTIAEAGVPGYELTPWHGLLAPAGTPKPVITKVHADVVKALAAPEIRTKLVSVGIDNIVGGTPAELAAFIKAETAKYAKLVKAAGLRRE 320          
BLAST of mRNA_P-wetherbeei_contig51922.1.1 vs. uniprot
Match: A0A7Y6TZ12_9BURK (Tripartite tricarboxylate transporter substrate binding protein n=1 Tax=Schlegelella koreensis TaxID=2742824 RepID=A0A7Y6TZ12_9BURK)

HSP 1 Score: 129 bits (324), Expect = 3.570e-34
Identity = 65/114 (57.02%), Postives = 82/114 (71.93%), Query Frame = 1
Query:    1 VPHMKTGRLRVLAIGSPKRSPTLPEVPTVAEAGVPGFDFDSWTGYLAPTGTPKEIITKLHTDITRTLGLPEVKDKLTTLGFDLVGGTPEAFAALIKTDIARFGKLIKAAGIQAE 342
            +PH+K+GRLR LAI   KR PTLP+VPT AEAG+P +DF  W G LAP GTP+ I+ KL T+I R L LP+VK +L   G + V  TP  F +LI++D  RFGKLIK+AGI+ E
Sbjct:  210 IPHIKSGRLRPLAITGTKRLPTLPDVPTFAEAGLPAYDFQLWFGVLAPAGTPRPIVEKLSTEIARILALPDVKQQLADQGLETVYRTPAEFDSLIRSDHERFGKLIKSAGIKIE 323          
BLAST of mRNA_P-wetherbeei_contig51922.1.1 vs. uniprot
Match: A0A1F4CY62_9PROT (Uncharacterized protein n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_62_13 TaxID=1797495 RepID=A0A1F4CY62_9PROT)

HSP 1 Score: 129 bits (324), Expect = 3.650e-34
Identity = 60/114 (52.63%), Postives = 86/114 (75.44%), Query Frame = 1
Query:    1 VPHMKTGRLRVLAIGSPKRSPTLPEVPTVAEAGVPGFDFDSWTGYLAPTGTPKEIITKLHTDITRTLGLPEVKDKLTTLGFDLVGGTPEAFAALIKTDIARFGKLIKAAGIQAE 342
            +PH+KTG+LRVLA    KR   LP+VPT+AE+G PGF+  +W G LAP+GTPK ++ +LH +  R L +  VKD+L  LGFD+VG  PEAFAA +KT+I ++ ++++A+GI+AE
Sbjct:  211 MPHVKTGKLRVLATTGLKRFSLLPQVPTIAESGFPGFEATAWYGLLAPSGTPKAVVARLHDETVRALRMSSVKDRLEPLGFDIVGSKPEAFAAYMKTEIKKWAEIVEASGIKAE 324          
BLAST of mRNA_P-wetherbeei_contig51922.1.1 vs. uniprot
Match: A0A5P2HF46_9BURK (Tripartite tricarboxylate transporter substrate binding protein n=2 Tax=Cupriavidus pauculus TaxID=82633 RepID=A0A5P2HF46_9BURK)

HSP 1 Score: 129 bits (324), Expect = 4.470e-34
Identity = 61/114 (53.51%), Postives = 87/114 (76.32%), Query Frame = 1
Query:    1 VPHMKTGRLRVLAIGSPKRSPTLPEVPTVAEAGVPGFDFDSWTGYLAPTGTPKEIITKLHTDITRTLGLPEVKDKLTTLGFDLVGGTPEAFAALIKTDIARFGKLIKAAGIQAE 342
            +P M+ G++R LA+GSP+R+P +P+VPT+AE+GVPG+D D+W GY+AP G P+ I+ +LH+ I    GL E KDKLT  G+ + GGTP+A AA IK D A++G +I+AAGI A+
Sbjct:  222 LPQMRNGKVRALAVGSPQRNPLMPDVPTIAESGVPGYDSDTWYGYIAPAGVPQPILARLHSAIVA--GLKENKDKLTNDGYVVDGGTPQAMAAAIKADTAKWGGIIRAAGITAD 333          
BLAST of mRNA_P-wetherbeei_contig51922.1.1 vs. uniprot
Match: A0A1F4AF14_9PROT (Uncharacterized protein n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_02_64_14 TaxID=1797482 RepID=A0A1F4AF14_9PROT)

HSP 1 Score: 129 bits (323), Expect = 7.360e-34
Identity = 57/114 (50.00%), Postives = 86/114 (75.44%), Query Frame = 1
Query:    1 VPHMKTGRLRVLAIGSPKRSPTLPEVPTVAEAGVPGFDFDSWTGYLAPTGTPKEIITKLHTDITRTLGLPEVKDKLTTLGFDLVGGTPEAFAALIKTDIARFGKLIKAAGIQAE 342
            +PH+KTG+LR LA+  P+RS  +P+VPT+AE+G PGF+  SW G LAP  TPK +IT+LH DI + L  P+VK +LT +GF++VG +P+ F A I+++I ++ K++KA+G + E
Sbjct:  229 LPHVKTGKLRALAVTGPQRSQAVPDVPTIAESGFPGFEARSWFGVLAPANTPKPVITRLHADIVKALQHPDVKQRLTGIGFEIVGSSPDEFGAYIRSEIKKWAKVVKASGAKPE 342          
BLAST of mRNA_P-wetherbeei_contig51922.1.1 vs. uniprot
Match: A0A1F4D6G6_9PROT (Uncharacterized protein n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_62_58 TaxID=1797497 RepID=A0A1F4D6G6_9PROT)

HSP 1 Score: 125 bits (315), Expect = 8.510e-34
Identity = 58/114 (50.88%), Postives = 89/114 (78.07%), Query Frame = 1
Query:    1 VPHMKTGRLRVLAIGSPKRSPTLPEVPTVAEAGVPGFDFDSWTGYLAPTGTPKEIITKLHTDITRTLGLPEVKDKLTTLGFDLVGGTPEAFAALIKTDIARFGKLIKAAGIQAE 342
            VPH++ GRLR LAI + KRS  +P+VPT++E+G+ GF+  SW G+LAP  TP+EI+TKLH +I + L LPEV+++L +LG + +G +P  FA+ I+ D+A++GK+++AAGI+ E
Sbjct:  114 VPHVRAGRLRPLAISALKRSGAIPDVPTLSESGLEGFEAGSWYGFLAPAKTPREIVTKLHGEIIKALKLPEVQERLASLGTEPIGSSPAEFASQIRNDLAKWGKVVQAAGIKPE 227          
BLAST of mRNA_P-wetherbeei_contig51922.1.1 vs. uniprot
Match: A0A7Y9IRY8_9BURK (Tripartite-type tricarboxylate transporter receptor subunit TctC n=2 Tax=Pigmentiphaga litoralis TaxID=516702 RepID=A0A7Y9IRY8_9BURK)

HSP 1 Score: 128 bits (321), Expect = 1.190e-33
Identity = 57/110 (51.82%), Postives = 80/110 (72.73%), Query Frame = 1
Query:   10 MKTGRLRVLAIGSPKRSPTLPEVPTVAEAGVPGFDFDSWTGYLAPTGTPKEIITKLHTDITRTLGLPEVKDKLTTLGFDLVGGTPEAFAALIKTDIARFGKLIKAAGIQA 339
            +K G+LRVL + +PKRS   P+ PT+AEAG+PG+ + +W G +AP+ TP  ++ +LHT+  + +  P V+DKL +LGFDLVG  P+ F ALIK D+AR G L+K AGIQA
Sbjct:  222 VKEGKLRVLGVSTPKRSAAAPDWPTIAEAGLPGYSYAAWNGIVAPSATPPAVVARLHTEFAKAIATPAVRDKLASLGFDLVGSGPDEFGALIKADVARLGALVKKAGIQA 331          
BLAST of mRNA_P-wetherbeei_contig51922.1.1 vs. uniprot
Match: A0A1F6VI37_9PROT (Uncharacterized protein n=1 Tax=Candidatus Muproteobacteria bacterium RBG_16_60_9 TaxID=1817755 RepID=A0A1F6VI37_9PROT)

HSP 1 Score: 127 bits (320), Expect = 1.550e-33
Identity = 56/114 (49.12%), Postives = 82/114 (71.93%), Query Frame = 1
Query:    1 VPHMKTGRLRVLAIGSPKRSPTLPEVPTVAEAGVPGFDFDSWTGYLAPTGTPKEIITKLHTDITRTLGLPEVKDKLTTLGFDLVGGTPEAFAALIKTDIARFGKLIKAAGIQAE 342
            +PH+KTG+LR L + S KR+P LP+ PT+AEAGVPGF+  SW G  AP GTPKE++ +LH +I + L  P+ K++L+  G DL+G TPE FAA I  +  ++ K++KA+G + +
Sbjct:  215 LPHIKTGKLRALGVTSSKRAPALPDAPTIAEAGVPGFEATSWFGVFAPAGTPKEVVARLHKEIVKALNSPDTKERLSGQGADLIGNTPEQFAAYIAAETTKWAKVVKASGAKVD 328          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig51922.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7C3JQC6_9PROT5.360e-3754.39Tripartite tricarboxylate transporter substrate bi... [more]
A0A1F4E310_9PROT8.190e-3553.10Uncharacterized protein n=1 Tax=Betaproteobacteria... [more]
A0A1F4DII2_9PROT1.200e-3451.30Uncharacterized protein n=1 Tax=Betaproteobacteria... [more]
A0A7Y6TZ12_9BURK3.570e-3457.02Tripartite tricarboxylate transporter substrate bi... [more]
A0A1F4CY62_9PROT3.650e-3452.63Uncharacterized protein n=1 Tax=Betaproteobacteria... [more]
A0A5P2HF46_9BURK4.470e-3453.51Tripartite tricarboxylate transporter substrate bi... [more]
A0A1F4AF14_9PROT7.360e-3450.00Uncharacterized protein n=1 Tax=Betaproteobacteria... [more]
A0A1F4D6G6_9PROT8.510e-3450.88Uncharacterized protein n=1 Tax=Betaproteobacteria... [more]
A0A7Y9IRY8_9BURK1.190e-3351.82Tripartite-type tricarboxylate transporter recepto... [more]
A0A1F6VI37_9PROT1.550e-3349.12Uncharacterized protein n=1 Tax=Candidatus Muprote... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig51922contigP-wetherbeei_contig51922:69..413 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog264198.Reut_B4356
PFAMsTctC
Model size345
Max annot lvl28216|Betaproteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.42e-32
EggNOG OGsCOG3181@1|root,COG3181@2|Bacteria,1R41N@1224|Proteobacteria,2VMIF@28216|Betaproteobacteria
DescriptionTripartite tricarboxylate transporter family receptor
Cds size336
COG categoryS
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186778.9610069-UTR-P-wetherbeei_contig51922:68..771683186778.9610069-UTR-P-wetherbeei_contig51922:68..77Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig51922 69..77 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186778.9703162-CDS-P-wetherbeei_contig51922:77..4131683186778.9703162-CDS-P-wetherbeei_contig51922:77..413Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig51922 78..413 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig51922.1.1prot_P-wetherbeei_contig51922.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig51922 78..413 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig51922.1.1

>prot_P-wetherbeei_contig51922.1.1 ID=prot_P-wetherbeei_contig51922.1.1|Name=mRNA_P-wetherbeei_contig51922.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=112bp
MKTGRLRVLAIGSPKRSPTLPEVPTVAEAGVPGFDFDSWTGYLAPTGTPK
EIITKLHTDITRTLGLPEVKDKLTTLGFDLVGGTPEAFAALIKTDIARFG
KLIKAAGIQAE*
back to top

mRNA from alignment at P-wetherbeei_contig51922:69..413+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig51922.1.1 ID=mRNA_P-wetherbeei_contig51922.1.1|Name=mRNA_P-wetherbeei_contig51922.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=345bp|location=Sequence derived from alignment at P-wetherbeei_contig51922:69..413+ (Phaeothamnion wetherbeei SAG_119_79)
GTGCCGCATATGAAGACGGGCCGGCTGCGCGTGCTCGCGATCGGCAGTCC CAAGCGTTCGCCGACTTTACCCGAAGTGCCTACCGTTGCAGAGGCTGGCG TGCCGGGTTTCGATTTCGATTCGTGGACTGGCTATCTCGCGCCAACCGGC ACGCCGAAAGAGATCATCACCAAGCTGCACACCGATATCACGCGTACGCT GGGCCTGCCGGAAGTGAAGGACAAATTGACCACGCTGGGGTTCGACCTCG TCGGCGGCACGCCCGAGGCATTTGCGGCGCTGATCAAAACCGACATCGCG CGTTTCGGCAAGCTGATCAAGGCGGCGGGCATACAGGCCGAGTGA
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig51922:69..413+

>mRNA_P-wetherbeei_contig51922.1.1 ID=mRNA_P-wetherbeei_contig51922.1.1|Name=mRNA_P-wetherbeei_contig51922.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=336bp|location=Sequence derived from alignment at P-wetherbeei_contig51922:69..413+ (Phaeothamnion wetherbeei SAG_119_79)
ATGAAGACGGGCCGGCTGCGCGTGCTCGCGATCGGCAGTCCCAAGCGTTC
GCCGACTTTACCCGAAGTGCCTACCGTTGCAGAGGCTGGCGTGCCGGGTT
TCGATTTCGATTCGTGGACTGGCTATCTCGCGCCAACCGGCACGCCGAAA
GAGATCATCACCAAGCTGCACACCGATATCACGCGTACGCTGGGCCTGCC
GGAAGTGAAGGACAAATTGACCACGCTGGGGTTCGACCTCGTCGGCGGCA
CGCCCGAGGCATTTGCGGCGCTGATCAAAACCGACATCGCGCGTTTCGGC
AAGCTGATCAAGGCGGCGGGCATACAGGCCGAGTGA
back to top