mRNA_P-wetherbeei_contig51850.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig51850.2.1
Unique NamemRNA_P-wetherbeei_contig51850.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig51850.2.1 vs. uniprot
Match: A0A7C4Y7X3_9HYPH (Uncharacterized protein n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A7C4Y7X3_9HYPH)

HSP 1 Score: 106 bits (264), Expect = 4.450e-27
Identity = 46/98 (46.94%), Postives = 68/98 (69.39%), Query Frame = 1
Query:   88 GDDLRTAIAGKTVHVTTPIGTVPVSFRSDGTMSGRSSGVAAYAMAAADQGRWWVIGDRLCQQWAKWFNKATHCFSMRREGRTLYWS-GSGRSGVATIA 378
            G+ LR A++GKTV++ TP+G +P+S+R +GTM GRS  +A Y  + +D G WW+  DRLCQ+W  W     +C++MRR+G  ++WS   GR+G A IA
Sbjct:   28 GESLRAAVSGKTVYLATPVGALPISYRPNGTMLGRSGRLAMYVGSESDYGTWWISRDRLCQRWDTWLEGKAYCYTMRRDGDVVHWSRNDGRTGTAMIA 125          
BLAST of mRNA_P-wetherbeei_contig51850.2.1 vs. uniprot
Match: A0A1E2S2A1_9HYPH (Uncharacterized protein n=1 Tax=Methyloligella halotolerans TaxID=1177755 RepID=A0A1E2S2A1_9HYPH)

HSP 1 Score: 82.8 bits (203), Expect = 7.900e-18
Identity = 40/105 (38.10%), Postives = 65/105 (61.90%), Query Frame = 1
Query:   76 DSVGGDDLRTAIAGKTVHVTTPIGTVPVSFRSDGTMSGRSSGVAAY---AMAAADQGRWWVIGDRLCQQWAKWFNKATHCFSMRREGRTLYW-SGSGRSGVATIA 378
            +S+ GD+LR+A++GKTV++      +P+ + + G+M GR   VAA      +  D G+WWV GD+LCQ+W  W +  ++C+ + + G T+ W    GRSG A I+
Sbjct:   24 NSLAGDELRSAVSGKTVYLRISGFELPIQYSAGGSMRGRMGSVAASFAGGESPTDTGKWWVKGDQLCQKWNSWMDGQSYCYRLTKTGSTVSWVRNDGRSGTARIS 128          
BLAST of mRNA_P-wetherbeei_contig51850.2.1 vs. uniprot
Match: UPI002011F4E3 (hypothetical protein n=3 Tax=unclassified Ciceribacter TaxID=2628820 RepID=UPI002011F4E3)

HSP 1 Score: 82.0 bits (201), Expect = 1.660e-17
Identity = 42/106 (39.62%), Postives = 67/106 (63.21%), Query Frame = 1
Query:   73 ADSVGGDDLRTAIAGKTVHVTTPIGT-VPVSFRSDGTMSGRSSGVAAYAM-AAADQGRWWVIGDRLCQQWAKWFNKATHCFSMRR-EGRTLYWS-GSGRSGVATIA 378
            A  + G +++  IAGKTV + TP+G  +P+ +R+DG ++G  SG +  +M A  ++GRWWV G RLCQQW  W+   T CF++++ +G  + W    G +G A I+
Sbjct:   22 ASELSGGEVKELIAGKTVRLDTPLGIKLPLRYRTDGAVAGDISGFSMASMFAPKEEGRWWVDGQRLCQQWPTWYKGRTFCFTIKKLDGNRIAWQRDDGATGTAVIS 127          
BLAST of mRNA_P-wetherbeei_contig51850.2.1 vs. uniprot
Match: A0A2S5M4Q3_HYPSQ (Uncharacterized protein n=1 Tax=Hyphomicrobium sp. TaxID=82 RepID=A0A2S5M4Q3_HYPSQ)

HSP 1 Score: 79.7 bits (195), Expect = 1.230e-16
Identity = 38/118 (32.20%), Postives = 65/118 (55.08%), Query Frame = 1
Query:   31 MLATGAASCHAAFAADSVGGDDLRTAIAGKTVHVTTPIGTVPVSFRSDGTMSGRSSGVAAYAMAAADQGRWWVIGDRLCQQWAKWFNKATHCFSMRREGRTLYW-SGSGRSGVATIAN 381
            + A G A+   + +A  +G  +L+  +AGKT+ ++ P G++P+ +   GTM  +S  +  +A  + D+G W + G+R CQ+W  W      CF++ R G T+ W S  G +G A   N
Sbjct:   11 LAAAGIAAASGSASAGQLGAAELKVLLAGKTISLSAPFGSLPIRYSPGGTMVAKSKAMGLFAGVSEDRGTWRIAGNRFCQRWTVWNGGKEQCFTVTRTGTTVRWVSNDGMTGTAYAMN 128          
BLAST of mRNA_P-wetherbeei_contig51850.2.1 vs. uniprot
Match: J2VKA1_9HYPH (Uncharacterized protein n=1 Tax=Phyllobacterium sp. YR531 TaxID=1144343 RepID=J2VKA1_9HYPH)

HSP 1 Score: 79.3 bits (194), Expect = 1.780e-16
Identity = 42/107 (39.25%), Postives = 68/107 (63.55%), Query Frame = 1
Query:   73 ADSVGGDDLRTAIAGKTVHVTTPIG-TVPVSFRSDGTMSGRSSGVAAYAMAAADQ-GRWWVIGDRLCQQWAKWFNKATHCFSMRREG-RTLYW-SGSGRSGVATIAN 381
            AD + G +++  I+G+ V ++TP G  +P+S+R++G +SG  SG++A +M A  + G+WW+ G+RLCQQW  W+     CF++ + G  T+ W    G SG A I N
Sbjct:   23 ADDLSGAEIKKLISGEKVFLSTPFGGELPLSYRTNGQVSGDVSGISAASMFAPKEIGKWWIEGNRLCQQWPTWYKGRQFCFTIVKTGDSTITWLRDDGTSGTARIGN 129          
BLAST of mRNA_P-wetherbeei_contig51850.2.1 vs. uniprot
Match: A0A1I7N3P9_9HYPH (Uncharacterized protein n=3 Tax=Hyphomicrobium TaxID=81 RepID=A0A1I7N3P9_9HYPH)

HSP 1 Score: 78.6 bits (192), Expect = 3.140e-16
Identity = 39/102 (38.24%), Postives = 63/102 (61.76%), Query Frame = 1
Query:   70 AADSVGGDDLRTAIAGKTVHVTTPIGTVPVSFRSDGTMSGRSSGVAAYAMAAA-DQGRWWVIGDRLCQQWAKWFNKATHCFSMRREGRTLYW-SGSGRSGVA 369
            AAD++ G +LR  +AG+T++++ P G+VP+ +   GTMS +S  +A ++   + D+G W + G++ CQ+W  W      CFS+ R G TL W S  G +G A
Sbjct:   22 AADNLTGIELRGLLAGRTIYISAPFGSVPIRYNPGGTMSAKSKAMAVFSGGISEDRGTWRISGNQFCQRWNLWQAGREQCFSVTRTGSTLRWASNDGMTGTA 123          
BLAST of mRNA_P-wetherbeei_contig51850.2.1 vs. uniprot
Match: E3I607_RHOVT (Uncharacterized protein n=4 Tax=Rhodomicrobium TaxID=1068 RepID=E3I607_RHOVT)

HSP 1 Score: 78.2 bits (191), Expect = 4.670e-16
Identity = 38/99 (38.38%), Postives = 62/99 (62.63%), Query Frame = 1
Query:   88 GDDLRTAIAGKTVHVTTPIGTVPVSFRSDGTMSGRSS-GVAAYAMAAADQGRWWVIGDRLCQQWAKWFNKATHCFSMRREGRT-LYWS-GSGRSGVATI 375
            G  L +A++GKTV+++TP+G VP+ + ++G +SGR+   +        D GRWWV   +LC +W +W +  THCF+M+R   T ++W    G+SG A +
Sbjct:   27 GPALHSAVSGKTVYISTPMGEVPIRYAANGQVSGRTELALLDGETTTKDSGRWWVADSKLCIRWNRWMSGETHCFTMKRVSPTEVHWRRDDGKSGRARL 125          
BLAST of mRNA_P-wetherbeei_contig51850.2.1 vs. uniprot
Match: A0A7X3LXJ8_9HYPH (Uncharacterized protein n=2 Tax=Stappia sp. GBMRC 2046 TaxID=2692190 RepID=A0A7X3LXJ8_9HYPH)

HSP 1 Score: 77.4 bits (189), Expect = 8.010e-16
Identity = 46/120 (38.33%), Postives = 72/120 (60.00%), Query Frame = 1
Query:   31 MLATGAASCHAAFAADSVGGDDLRTAIAGKTVHVTTPIG-TVPVSFRSDGTM--SGRSSGVAAYAMAAADQGRWWVIGDRLCQQWAKWFNKATHCFSMRREG-RTLYWS-GSGRSGVATI 375
            M+A G+ +  AA A   + G +++ A++GK + + TP G   P+ +R +G +  SG++ G+  + M  +D GRWWV GDRLCQQW  W++    CF++  +G  TL W+   G SG A I
Sbjct:    1 MIAIGSLA-QAAIANSEMTGSEIKAAVSGKRIFLKTPFGGEFPLYYRENGKVDGSGKAIGLGRF-MKPSDSGRWWVQGDRLCQQWRSWYDGKRFCFTLAEQGGNTLLWTRDDGLSGRARI 118          
BLAST of mRNA_P-wetherbeei_contig51850.2.1 vs. uniprot
Match: UPI001FE66406 (hypothetical protein n=1 Tax=Peteryoungia desertarenae TaxID=1813451 RepID=UPI001FE66406)

HSP 1 Score: 77.0 bits (188), Expect = 1.080e-15
Identity = 45/115 (39.13%), Postives = 69/115 (60.00%), Query Frame = 1
Query:   52 SCHAAFAADSVGGDDLRTAIAGKTVHVTTPIG-TVPVSFRSDGTM--SGRSSGVAAYAMAAADQGRWWVIGDRLCQQWAKWFNKATHCFSMRREGRT-LYWS-GSGRSGVATIAN 381
            S  AA A +    DD+++ I GK +++ TP G   P+++R DG +  SG + G+  +A    D GRWW+ GDRLCQQ+  W+  A  CF ++R  +T L W+  +G++G A I N
Sbjct:    3 SVPAALATERFTADDIKSDIIGKRIYLATPFGGEFPLNYRRDGKVDGSGEALGLGRFAKPN-DTGRWWINGDRLCQQFTSWYRGAAMCFELQRIDQTRLKWTRDNGQTGTARIGN 116          
BLAST of mRNA_P-wetherbeei_contig51850.2.1 vs. uniprot
Match: A0A4S8NU73_9HYPH (Uncharacterized protein n=1 Tax=Rhizobium ipomoeae TaxID=1210932 RepID=A0A4S8NU73_9HYPH)

HSP 1 Score: 75.5 bits (184), Expect = 6.240e-15
Identity = 48/123 (39.02%), Postives = 71/123 (57.72%), Query Frame = 1
Query:   28 LMLATGAASCHAAFAADSVGGDDLRTAIAGKTVHVTTPIG-TVPVSFRSDGTM--SGRSSGVAAYAMAAADQGRWWVIGDRLCQQWAKWFNKATHCFSMRREG-RTLYW-SGSGRSGVATIAN 381
            L+ AT A S   A A +     D+R  I GK +++ TP G   P+++R +G +  SG + G+  +A    D+GRWW+ G+RLCQQ+  W+  A  CF + R G RTL W   +G++G A I N
Sbjct:   10 LVAATLALSVAGASANERYSATDIREDIIGKRIYLATPFGGEFPLNYRPNGVVDGSGEALGLGRFAKPD-DKGRWWIRGNRLCQQFTSWYKGAPMCFELIRTGERTLKWIRDNGQTGTARIGN 131          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig51850.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7C4Y7X3_9HYPH4.450e-2746.94Uncharacterized protein n=1 Tax=Hyphomicrobiales b... [more]
A0A1E2S2A1_9HYPH7.900e-1838.10Uncharacterized protein n=1 Tax=Methyloligella hal... [more]
UPI002011F4E31.660e-1739.62hypothetical protein n=3 Tax=unclassified Ciceriba... [more]
A0A2S5M4Q3_HYPSQ1.230e-1632.20Uncharacterized protein n=1 Tax=Hyphomicrobium sp.... [more]
J2VKA1_9HYPH1.780e-1639.25Uncharacterized protein n=1 Tax=Phyllobacterium sp... [more]
A0A1I7N3P9_9HYPH3.140e-1638.24Uncharacterized protein n=3 Tax=Hyphomicrobium Tax... [more]
E3I607_RHOVT4.670e-1638.38Uncharacterized protein n=4 Tax=Rhodomicrobium Tax... [more]
A0A7X3LXJ8_9HYPH8.010e-1638.33Uncharacterized protein n=2 Tax=Stappia sp. GBMRC ... [more]
UPI001FE664061.080e-1539.13hypothetical protein n=1 Tax=Peteryoungia desertar... [more]
A0A4S8NU73_9HYPH6.240e-1539.02Uncharacterized protein n=1 Tax=Rhizobium ipomoeae... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig51850contigP-wetherbeei_contig51850:107..490 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1267005.KB911259_gene4039
PFAMsSH3_3
Model size384
Max annot lvl28211|Alphaproteobacteria
Hectar predicted targeting categorysignal peptide
Exons1
Evalue3.32e-16
EggNOG OGsCOG3103@1|root,COG4991@2|Bacteria,1Q1YG@1224|Proteobacteria,2UMEU@28211|Alphaproteobacteria
DescriptionBacterial SH3 domain
Cds size384
COG categoryT
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186778.0985744-CDS-P-wetherbeei_contig51850:106..4901683186778.0985744-CDS-P-wetherbeei_contig51850:106..490Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig51850 107..490 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig51850.2.1prot_P-wetherbeei_contig51850.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig51850 107..490 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig51850.2.1

>prot_P-wetherbeei_contig51850.2.1 ID=prot_P-wetherbeei_contig51850.2.1|Name=mRNA_P-wetherbeei_contig51850.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=128bp
MIRLFTVVCLMLATGAASCHAAFAADSVGGDDLRTAIAGKTVHVTTPIGT
VPVSFRSDGTMSGRSSGVAAYAMAAADQGRWWVIGDRLCQQWAKWFNKAT
HCFSMRREGRTLYWSGSGRSGVATIAN*
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mRNA from alignment at P-wetherbeei_contig51850:107..490-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig51850.2.1 ID=mRNA_P-wetherbeei_contig51850.2.1|Name=mRNA_P-wetherbeei_contig51850.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=384bp|location=Sequence derived from alignment at P-wetherbeei_contig51850:107..490- (Phaeothamnion wetherbeei SAG_119_79)
ATGATCCGTCTTTTCACCGTTGTGTGCCTCATGTTGGCGACGGGGGCTGC GTCGTGCCATGCCGCCTTCGCGGCAGATTCCGTCGGCGGGGACGACTTGC GTACGGCAATCGCTGGCAAGACGGTGCATGTGACGACGCCGATTGGGACG GTGCCAGTCAGCTTCCGGTCCGATGGTACGATGTCTGGACGGTCGTCGGG CGTTGCGGCTTACGCCATGGCAGCGGCTGACCAGGGGCGCTGGTGGGTGA TCGGCGACCGGCTCTGCCAGCAGTGGGCTAAGTGGTTCAACAAGGCAACG CACTGCTTCTCGATGCGGCGGGAAGGGCGCACGCTCTATTGGAGCGGCAG CGGACGCAGTGGCGTCGCGACGATAGCAAATTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig51850:107..490-

>mRNA_P-wetherbeei_contig51850.2.1 ID=mRNA_P-wetherbeei_contig51850.2.1|Name=mRNA_P-wetherbeei_contig51850.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=384bp|location=Sequence derived from alignment at P-wetherbeei_contig51850:107..490- (Phaeothamnion wetherbeei SAG_119_79)
ATGATCCGTCTTTTCACCGTTGTGTGCCTCATGTTGGCGACGGGGGCTGC
GTCGTGCCATGCCGCCTTCGCGGCAGATTCCGTCGGCGGGGACGACTTGC
GTACGGCAATCGCTGGCAAGACGGTGCATGTGACGACGCCGATTGGGACG
GTGCCAGTCAGCTTCCGGTCCGATGGTACGATGTCTGGACGGTCGTCGGG
CGTTGCGGCTTACGCCATGGCAGCGGCTGACCAGGGGCGCTGGTGGGTGA
TCGGCGACCGGCTCTGCCAGCAGTGGGCTAAGTGGTTCAACAAGGCAACG
CACTGCTTCTCGATGCGGCGGGAAGGGCGCACGCTCTATTGGAGCGGCAG
CGGACGCAGTGGCGTCGCGACGATAGCAAATTGA
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