mRNA_P-wetherbeei_contig5183.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5183.1.1
Unique NamemRNA_P-wetherbeei_contig5183.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig5183.1.1 vs. uniprot
Match: A0A6H5JNY1_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNY1_9PHAE)

HSP 1 Score: 64.7 bits (156), Expect = 1.420e-7
Identity = 63/209 (30.14%), Postives = 91/209 (43.54%), Query Frame = 2 
Query:  266 FEMQAFLHPNLANMRYVDKLASSPAHADVVKKKIRAGIHGLLTEVV--AANHA---------AATAXXXXXXXXXXXXXXXAGEEDASVDQKHKATIGYF---SGGG------------------------AGIVRTVLAAPASWGSLEPDFCMAGRLIRPDRTSLRPRFVEMRIFLNANIDAMPALDWTPALSAEAAEMAVPVRLQDP 778
            F+MQ  LHP  A++RYVDKLAS+ A A  VK  I   +  L  ++   AA H          +A A               + EE  S +Q  +A +       GG                         A + R V+ A AS   LE DF  AGR++   R+++  ++VEM +FL+ N+D +P  D T  L+   A   +P RL +P
Sbjct:  264 FDMQMALHPTTADLRYVDKLASTSAFAGAVKSTITDKVISLAVKLAEAAALHTGDGSTTPAWSAAADKPAAKRARQAAAPGSKEEPPSFEQTARAELTKLRAVQGGSLAAGLRCEDVLKWWKMWAHAYPLLARVARVVIGALASAAVLEHDFSNAGRMMTSSRSTMDSKYVEMILFLHGNLDLIPE-DITK-LTEAVARTKIPGRLANP 470
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5183.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JNY1_9PHAE1.420e-730.14Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5183contigP-wetherbeei_contig5183:1799..3082 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1284
Hectar predicted targeting categoryother localisation
Exons1
Cds size843
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186777.8346567-UTR-P-wetherbeei_contig5183:1798..19101683186777.8346567-UTR-P-wetherbeei_contig5183:1798..1910Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5183 1799..1910 +
1683186777.8514664-UTR-P-wetherbeei_contig5183:2753..30821683186777.8514664-UTR-P-wetherbeei_contig5183:2753..3082Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5183 2754..3082 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186777.8434956-CDS-P-wetherbeei_contig5183:1910..27531683186777.8434956-CDS-P-wetherbeei_contig5183:1910..2753Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5183 1911..2753 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5183.1.1prot_P-wetherbeei_contig5183.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5183 1911..2753 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5183.1.1

>prot_P-wetherbeei_contig5183.1.1 ID=prot_P-wetherbeei_contig5183.1.1|Name=mRNA_P-wetherbeei_contig5183.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=281bp
MDSKAGRYGGHRGGRRWRRGRSCAMRSGVACLFRYEETCTTDASGTGSRS
FFEMQAFLHPNLANMRYVDKLASSPAHADVVKKKIRAGIHGLLTEVVAAN
HAAATAAAAAAAEAAKAAETAAGEEDASVDQKHKATIGYFSGGGAGIVRT
VLAAPASWGSLEPDFCMAGRLIRPDRTSLRPRFVEMRIFLNANIDAMPAL
DWTPALSAEAAEMAVPVRLQDPAVLKATAALFRIQPAAGVEAGVDDRGTS
EMRTRGVPMMMRRRKMRMKRRRPTVFSQVA*
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mRNA from alignment at P-wetherbeei_contig5183:1799..3082+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5183.1.1 ID=mRNA_P-wetherbeei_contig5183.1.1|Name=mRNA_P-wetherbeei_contig5183.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1284bp|location=Sequence derived from alignment at P-wetherbeei_contig5183:1799..3082+ (Phaeothamnion wetherbeei SAG_119_79)
AGATGGGAGCCGCCGAAATGCCCGAGCTTGAAGCTAAAGCAATTGACGTC
GACGTTTCCGAGGATTCCGGGGCGAAGAAGAAGCCGCGAAAGGGGAAGGA
TGCTACTGTAGGATGGACTCAAAAGCCGGACGATATGGGGGCCATCGTGG
GGGACGGCGCTGGAGACGCGGGAGAAGCTGCGCGATGCGATCTGGAGTTG
CCTGTTTGTTCCGGTACGAAGAGACCTGCACCACCGATGCTTCCGGCACA
GGATCCCGCAGCTTCTTCGAGATGCAGGCGTTTCTCCACCCCAATCTCGC
CAACATGCGCTACGTGGACAAGCTGGCGTCTTCGCCGGCGCACGCCGATG
TGGTCAAGAAGAAGATTCGGGCTGGAATCCATGGTCTGCTGACGGAAGTC
GTCGCTGCCAACCACGCGGCGGCGACGGCGGCGGCTGCAGCAGCCGCAGA
AGCAGCAAAGGCGGCGGAAACAGCGGCTGGGGAAGAGGACGCCTCGGTGG
ATCAAAAGCACAAGGCGACTATCGGTTATTTTTCCGGCGGTGGAGCTGGC
ATAGTTCGTACGGTGCTGGCGGCGCCGGCATCTTGGGGTTCCCTGGAGCC
CGACTTCTGCATGGCCGGACGCCTCATCCGGCCCGATCGCACCAGCCTCA
GACCGCGGTTTGTCGAGATGAGAATCTTTCTGAACGCCAACATTGACGCC
ATGCCGGCGCTGGACTGGACTCCGGCTTTGTCGGCGGAGGCTGCTGAGAT
GGCCGTGCCAGTGCGCCTGCAGGATCCGGCAGTGCTCAAGGCGACGGCGG
CACTGTTCCGCATTCAACCTGCTGCGGGTGTTGAGGCGGGAGTAGACGAC
AGGGGAACCAGCGAGATGAGGACGCGAGGAGTTCCGATGATGATGAGGAG
GAGGAAAATGAGGATGAAACGTAGAAGGCCCACGGTTTTCTCGCAAGTGG
CGTAGAAGGCCCACGGTTTTCGCGCAAGTGGCACAGTGGGACTAGTAAAA
CGGGCGTGGGGTTGCAGTTCGGCCCGCTGCGGAGGGCAAGCTTCGTTGAC
GCCGCACTTCGCTAGCTGTGAAGATGTAGCTAAGACGAACGAATTCCTGC
CCAACTAACGGTAACTAGCCCATACCTTTACTATGGAGCGCTCTTCTAGC
ATGAGTAACGATCGGAACAGTTAATAGCGAGCGCCATTCTGAGGGCACTA
ACGAGGTCCATTAACGGTATCGCTGTTTTGGGGCAACGACTTATCGACTA
ATCATTAATCGGAACTAACGGTATCGGTCTGGGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5183:1799..3082+

>mRNA_P-wetherbeei_contig5183.1.1 ID=mRNA_P-wetherbeei_contig5183.1.1|Name=mRNA_P-wetherbeei_contig5183.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=843bp|location=Sequence derived from alignment at P-wetherbeei_contig5183:1799..3082+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGACTCAAAAGCCGGACGATATGGGGGCCATCGTGGGGGACGGCGCTG
GAGACGCGGGAGAAGCTGCGCGATGCGATCTGGAGTTGCCTGTTTGTTCC
GGTACGAAGAGACCTGCACCACCGATGCTTCCGGCACAGGATCCCGCAGC
TTCTTCGAGATGCAGGCGTTTCTCCACCCCAATCTCGCCAACATGCGCTA
CGTGGACAAGCTGGCGTCTTCGCCGGCGCACGCCGATGTGGTCAAGAAGA
AGATTCGGGCTGGAATCCATGGTCTGCTGACGGAAGTCGTCGCTGCCAAC
CACGCGGCGGCGACGGCGGCGGCTGCAGCAGCCGCAGAAGCAGCAAAGGC
GGCGGAAACAGCGGCTGGGGAAGAGGACGCCTCGGTGGATCAAAAGCACA
AGGCGACTATCGGTTATTTTTCCGGCGGTGGAGCTGGCATAGTTCGTACG
GTGCTGGCGGCGCCGGCATCTTGGGGTTCCCTGGAGCCCGACTTCTGCAT
GGCCGGACGCCTCATCCGGCCCGATCGCACCAGCCTCAGACCGCGGTTTG
TCGAGATGAGAATCTTTCTGAACGCCAACATTGACGCCATGCCGGCGCTG
GACTGGACTCCGGCTTTGTCGGCGGAGGCTGCTGAGATGGCCGTGCCAGT
GCGCCTGCAGGATCCGGCAGTGCTCAAGGCGACGGCGGCACTGTTCCGCA
TTCAACCTGCTGCGGGTGTTGAGGCGGGAGTAGACGACAGGGGAACCAGC
GAGATGAGGACGCGAGGAGTTCCGATGATGATGAGGAGGAGGAAAATGAG
GATGAAACGTAGAAGGCCCACGGTTTTCTCGCAAGTGGCGTAG
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