mRNA_P-wetherbeei_contig51813.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig51813.1.1
Unique NamemRNA_P-wetherbeei_contig51813.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig51813.1.1 vs. uniprot
Match: A0A2H5XEB7_9BACT (Uncharacterized protein n=1 Tax=bacterium HR17 TaxID=2035412 RepID=A0A2H5XEB7_9BACT)

HSP 1 Score: 53.5 bits (127), Expect = 3.930e-5
Identity = 44/135 (32.59%), Postives = 64/135 (47.41%), Query Frame = 1 
Query:    1 VSAEATPVYNCIAWTTGNTKSW-DWP-PSMFPMDDPR------DAFKKYYTERGFSPISEADAAKVGKDKELVGYWEDPNGPTHGSVH-----GPSHGDTWESKCGQAARIRHDRDELVSDVYGSIKGYWLKTGP 366
            ++ EATP YNC AW+ G T  W DW   S++  +D        DAF +++     + I++AD   + +D   V     P G TH +       G      +ESKCG   RI H RD+L    YG+   Y+ +  P
Sbjct:  255 ITGEATPTYNCFAWSIGVTNQWIDWEVDSVWGDNDGTLESTDFDAFYQHFGYVRTTNIADADIL-LYRDPSQVSTIN-PEGITHAARRRLCNCGLGRWIMFESKCGGWERIEHRRDQLSGGDYGTPFRYYKRRNP 387
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig51813.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2H5XEB7_9BACT3.930e-532.59Uncharacterized protein n=1 Tax=bacterium HR17 Tax... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig51813contigP-wetherbeei_contig51813:1..549 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog439235.Dalk_2441
Model size549
Max annot lvl28221|Deltaproteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.04e-15
EggNOG OGsCOG3501@1|root,COG3501@2|Bacteria,1N5QX@1224|Proteobacteria,4330S@68525|delta/epsilon subdivisions,2WXBP@28221|Deltaproteobacteria
DescriptionRhs element vgr protein
Cds size549
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186777.6698327-CDS-P-wetherbeei_contig51813:0..5491683186777.6698327-CDS-P-wetherbeei_contig51813:0..549Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig51813 1..549 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig51813.1.1prot_P-wetherbeei_contig51813.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig51813 1..549 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig51813.1.1

>prot_P-wetherbeei_contig51813.1.1 ID=prot_P-wetherbeei_contig51813.1.1|Name=mRNA_P-wetherbeei_contig51813.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=183bp
VSAEATPVYNCIAWTTGNTKSWDWPPSMFPMDDPRDAFKKYYTERGFSPI
SEADAAKVGKDKELVGYWEDPNGPTHGSVHGPSHGDTWESKCGQAARIRH
DRDELVSDVYGSIKGYWLKTGPSTVVPQTLNTSLIAMIKEKLGLRLDTVN
PDVKAKFNEAYGQWQNYQRSPQVSMSSDPAAYC
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mRNA from alignment at P-wetherbeei_contig51813:1..549-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig51813.1.1 ID=mRNA_P-wetherbeei_contig51813.1.1|Name=mRNA_P-wetherbeei_contig51813.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=549bp|location=Sequence derived from alignment at P-wetherbeei_contig51813:1..549- (Phaeothamnion wetherbeei SAG_119_79)
GTGAGCGCCGAGGCCACCCCGGTCTACAACTGCATCGCCTGGACGACGGG
CAACACGAAGAGCTGGGATTGGCCCCCCTCTATGTTCCCGATGGACGATC
CGCGCGACGCTTTCAAGAAATACTACACGGAGCGCGGCTTCAGCCCCATC
AGCGAGGCCGATGCCGCCAAGGTGGGTAAGGATAAAGAGCTGGTCGGATA
CTGGGAAGATCCTAACGGTCCAACCCACGGCTCCGTGCACGGCCCGAGCC
ACGGCGACACGTGGGAGAGCAAGTGCGGCCAGGCCGCGCGCATCCGTCAC
GACCGCGACGAGCTGGTTTCCGATGTCTACGGCTCCATCAAGGGTTACTG
GCTCAAGACCGGCCCCTCGACGGTCGTTCCCCAGACTCTCAATACTTCGC
TCATCGCGATGATCAAGGAGAAGCTAGGCCTGCGTCTGGACACGGTCAAT
CCCGATGTGAAGGCCAAGTTCAACGAGGCTTACGGGCAATGGCAAAACTA
CCAGCGCAGCCCGCAGGTATCGATGTCCTCCGACCCGGCTGCCTACTGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig51813:1..549-

>mRNA_P-wetherbeei_contig51813.1.1 ID=mRNA_P-wetherbeei_contig51813.1.1|Name=mRNA_P-wetherbeei_contig51813.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=549bp|location=Sequence derived from alignment at P-wetherbeei_contig51813:1..549- (Phaeothamnion wetherbeei SAG_119_79)
GTGAGCGCCGAGGCCACCCCGGTCTACAACTGCATCGCCTGGACGACGGG
CAACACGAAGAGCTGGGATTGGCCCCCCTCTATGTTCCCGATGGACGATC
CGCGCGACGCTTTCAAGAAATACTACACGGAGCGCGGCTTCAGCCCCATC
AGCGAGGCCGATGCCGCCAAGGTGGGTAAGGATAAAGAGCTGGTCGGATA
CTGGGAAGATCCTAACGGTCCAACCCACGGCTCCGTGCACGGCCCGAGCC
ACGGCGACACGTGGGAGAGCAAGTGCGGCCAGGCCGCGCGCATCCGTCAC
GACCGCGACGAGCTGGTTTCCGATGTCTACGGCTCCATCAAGGGTTACTG
GCTCAAGACCGGCCCCTCGACGGTCGTTCCCCAGACTCTCAATACTTCGC
TCATCGCGATGATCAAGGAGAAGCTAGGCCTGCGTCTGGACACGGTCAAT
CCCGATGTGAAGGCCAAGTTCAACGAGGCTTACGGGCAATGGCAAAACTA
CCAGCGCAGCCCGCAGGTATCGATGTCCTCCGACCCGGCTGCCTACTGC
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