mRNA_P-wetherbeei_contig51805.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig51805.1.1
Unique NamemRNA_P-wetherbeei_contig51805.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig51805.1.1 vs. uniprot
Match: A0A2D2ATM7_9CAUL (Uncharacterized protein n=2 Tax=Caulobacter mirabilis TaxID=69666 RepID=A0A2D2ATM7_9CAUL)

HSP 1 Score: 145 bits (365), Expect = 2.640e-40
Identity = 70/98 (71.43%), Postives = 83/98 (84.69%), Query Frame = 1 
Query:    1 DPGFTPGTGLARDYPGPSGLIFRFLLPLLVKRSDRVSSPENSGRLLAELVTDRRFAGQRGRYVAVRRDQVIDVPPSAVAHDAELAAKLWDNSAGLVGL 294
            DPGFTPGTGLARDYPGP+GLIFRF+LP LV+R+ RVS+PENSGRLLA L TD R+AG RGRY+AVR + +I+  PSAVAHD  LAA+LW++SA L  L
Sbjct:  233 DPGFTPGTGLARDYPGPAGLIFRFILPRLVRRTARVSTPENSGRLLAALATDERYAGLRGRYMAVRGEALIETRPSAVAHDDALAARLWEDSARLAPL 330
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BLAST of mRNA_P-wetherbeei_contig51805.1.1 vs. uniprot
Match: UPI0014133F15 (SDR family NAD(P)-dependent oxidoreductase n=1 Tax=Caulobacter sp. SLTY TaxID=2683262 RepID=UPI0014133F15)

HSP 1 Score: 120 bits (301), Expect = 2.840e-31
Identity = 61/97 (62.89%), Postives = 72/97 (74.23%), Query Frame = 1 
Query:    1 DPGFTPGTGLARDYPGPSGLIFRFLLPLLVKRSDRVSSPENSGRLLAELVTDRRFAGQRGRYVAVRRDQVIDVPPSAVAHDAELAAKLWDNSAGLVG 291
            DPGFTPGTGLARDYP P  L+FRF+LPL+V R  RVS+P NSGRLLA+L  D R+AG RG Y+AVR   +  VPPSA+A D E  A+LW +S  L G
Sbjct:  199 DPGFTPGTGLARDYPFPLSLVFRFVLPLVV-RGKRVSTPANSGRLLAQLAVDPRWAGARGDYIAVRGRGLESVPPSALAQDDEACARLWTDSEALTG 294
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BLAST of mRNA_P-wetherbeei_contig51805.1.1 vs. uniprot
Match: A0A1W9JYT1_9PROT (Protochlorophyllide reductase n=1 Tax=Proteobacteria bacterium ST_bin14 TaxID=1978762 RepID=A0A1W9JYT1_9PROT)

HSP 1 Score: 91.3 bits (225), Expect = 4.650e-20
Identity = 50/98 (51.02%), Postives = 59/98 (60.20%), Query Frame = 1 
Query:    1 DPGFTPGTGLARDYPGPSGLIFRFLLPLLVKRSDRVSSPENSGRLLAELVTDRRFAGQRGRYVAVRRDQVIDVPPSAVAHDAELAAKLWDNSAGLVGL 294
            DPGF PGTGLAR Y      +FR +LPL++ R   VS+   SGR LA L TD  FAG RG Y ++ R Q I   PS +A D    A LWD+SA L GL
Sbjct:  200 DPGFVPGTGLARGYGPVINAVFRHILPLVI-RGPHVSTDMRSGRALAALATDAAFAGGRGLYWSMERGQAIVRTPSTLARDDAACAALWDDSAALTGL 296
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BLAST of mRNA_P-wetherbeei_contig51805.1.1 vs. uniprot
Match: UPI001CD90295 (SDR family NAD(P)-dependent oxidoreductase n=1 Tax=Novosphingobium sp. c7 TaxID=2866625 RepID=UPI001CD90295)

HSP 1 Score: 89.7 bits (221), Expect = 1.630e-19
Identity = 48/98 (48.98%), Postives = 63/98 (64.29%), Query Frame = 1 
Query:    1 DPGFTPGTGLARDYPGPSGLIFRFLLPLLVKRSDRVSSPENSGRLLAELVTDRRFAGQRGRYVAVRRDQVIDVPPSAVAHDAELAAKLWDNSAGLVGL 294
            DPG+ P TGL RD       +   +LP L+K +DR S+   SG+ LA+L TD RFAG RG Y +VR   +++V PS +A D E  A+LWD+SA LVGL
Sbjct:  194 DPGYVPHTGLGRDNGRIIAALVSLILPRLMK-ADRTSTIPRSGQFLADLATDGRFAGARGSYWSVRGPALVEVAPSQLARDDEACARLWDDSARLVGL 290
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BLAST of mRNA_P-wetherbeei_contig51805.1.1 vs. uniprot
Match: UPI00159FDA87 (SDR family NAD(P)-dependent oxidoreductase n=1 Tax=Parasphingopyxis algicola TaxID=2026624 RepID=UPI00159FDA87)

HSP 1 Score: 87.8 bits (216), Expect = 8.950e-19
Identity = 49/98 (50.00%), Postives = 62/98 (63.27%), Query Frame = 1 
Query:    1 DPGFTPGTGLARDYPGPSGLIFRFLLPLLVKRSDRVSSPENSGRLLAELVTDRRFAGQRGRYVAVRRDQVIDVPPSAVAHDAELAAKLWDNSAGLVGL 294
            DPG+ P TGLARDYP     I   ++PLL+ R DR S+   SGR LA+L  D R+A  +G Y +VR   ++   PS +A DA  A KLWD+SA LVGL
Sbjct:  195 DPGYVPTTGLARDYPKWLMAIVSRVIPLLMAR-DRTSTVPRSGRYLADLAVDDRYARGQGDYWSVRGPDLVKAEPSDLARDAAAARKLWDDSARLVGL 291
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BLAST of mRNA_P-wetherbeei_contig51805.1.1 vs. uniprot
Match: A0A258RZD6_9SPHN (Uncharacterized protein n=1 Tax=Sphingomonas sp. 28-63-12 TaxID=1970434 RepID=A0A258RZD6_9SPHN)

HSP 1 Score: 87.0 bits (214), Expect = 1.820e-18
Identity = 49/98 (50.00%), Postives = 61/98 (62.24%), Query Frame = 1 
Query:    1 DPGFTPGTGLARDYPGPSGLIFRFLLPLLVKRSDRVSSPENSGRLLAELVTDRRFAGQRGRYVAVRRDQVIDVPPSAVAHDAELAAKLWDNSAGLVGL 294
            DPGF PGTGLARDY    G +FR +LP++V R + VS+   SG+ LA L  D  +AG RG Y ++ R Q I   PS +A D    A LWD SAGL G+
Sbjct:  199 DPGFVPGTGLARDYGRVVGWLFRHILPVVV-RGNNVSTANISGQALAALAGDPAYAGGRGLYWSMERLQPIVRTPSVLACDETACAALWDASAGLAGM 295
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BLAST of mRNA_P-wetherbeei_contig51805.1.1 vs. uniprot
Match: A0A258SIW6_9SPHN (Uncharacterized protein n=2 Tax=Proteobacteria TaxID=1224 RepID=A0A258SIW6_9SPHN)

HSP 1 Score: 85.9 bits (211), Expect = 4.950e-18
Identity = 48/98 (48.98%), Postives = 62/98 (63.27%), Query Frame = 1 
Query:    1 DPGFTPGTGLARDYPGPSGLIFRFLLPLLVKRSDRVSSPENSGRLLAELVTDRRFAGQRGRYVAVRRDQVIDVPPSAVAHDAELAAKLWDNSAGLVGL 294
            DPGF PGTGLARDY      +FR +LP++V R + VS+ + SGR LA L  D  FAG RG Y ++ R + +   PS +A D    A LW++SA LVGL
Sbjct:  199 DPGFVPGTGLARDYGPMIRWLFRRILPIVV-RGENVSTAKASGRALAALAKDSGFAGGRGLYWSMTRRRPVVRTPSTLARDDAACAALWEDSATLVGL 295
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BLAST of mRNA_P-wetherbeei_contig51805.1.1 vs. uniprot
Match: A0A258FXZ9_9SPHN (Protochlorophyllide reductase n=2 Tax=unclassified Sphingomonas TaxID=196159 RepID=A0A258FXZ9_9SPHN)

HSP 1 Score: 84.0 bits (206), Expect = 2.620e-17
Identity = 45/98 (45.92%), Postives = 61/98 (62.24%), Query Frame = 1 
Query:    1 DPGFTPGTGLARDYPGPSGLIFRFLLPLLVKRSDRVSSPENSGRLLAELVTDRRFAGQRGRYVAVRRDQVIDVPPSAVAHDAELAAKLWDNSAGLVGL 294
            DPGF PGTGLAR Y      +FR +LP+++ R   VS+   SGR LA L TD  +AG RG Y ++ + + I+  PS +A D    A LW++SA L+GL
Sbjct:  199 DPGFVPGTGLARSYGPLINWLFRNVLPVVI-RGSHVSTAPLSGRALAALATDPVYAGGRGLYWSMEKGRAIERTPSTLARDDAACAALWNDSAALIGL 295
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BLAST of mRNA_P-wetherbeei_contig51805.1.1 vs. uniprot
Match: UPI000A19517C (SDR family NAD(P)-dependent oxidoreductase n=1 Tax=Aquidulcibacter paucihalophilus TaxID=1978549 RepID=UPI000A19517C)

HSP 1 Score: 62.8 bits (151), Expect = 1.660e-9
Identity = 39/98 (39.80%), Postives = 55/98 (56.12%), Query Frame = 1 
Query:    1 DPGFTPGTGLARDYPGPSGLIFRFLLPLLVKRSDRVSSPENSGRLLAELVTDRRFAGQRGRYVAVRRDQVIDVPPSAVAHDAELAAKLWDNSAGLVGL 294
            DPG TPGTGL R +      +   +LPL+V  S   ++ E +GR LAEL    + A +   Y ++RR ++    PS +A D    AKLW +SA LVG+
Sbjct:  193 DPGATPGTGLVRHHSWAIRNLIWPILPLVVPLSPAFNTVEAAGRGLAELALSAK-APEAKVYASLRRARLTWPDPSVIAQDDAACAKLWQDSADLVGV 289
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BLAST of mRNA_P-wetherbeei_contig51805.1.1 vs. uniprot
Match: A0A2W4S6Q4_9PROT (Dehydrogenase n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A2W4S6Q4_9PROT)

HSP 1 Score: 62.8 bits (151), Expect = 1.690e-9
Identity = 44/99 (44.44%), Postives = 53/99 (53.54%), Query Frame = 1 
Query:    1 DPGFTPGTGLARDYPGPSGLIFRFLLPLLVKRSDRVSSPENSGRLLAELVTDRRFAGQRGRYVAVRRDQVIDVP-PSAVAHDAELAAKLWDNSAGLVGL 294
            DPG TPGTGL R+   P   +   LLPLLV     ++S   +G  LA L T        GR  A  R  V+  P PS +A D   AAKLW +SAG+VGL
Sbjct:  196 DPGLTPGTGLVRNQMWPVRALVWPLLPLLVPFRHGMNSLAAAGAGLAALATT--TVPPAGRVYASLRKGVLTWPEPSVLARDDAAAAKLWADSAGMVGL 292
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig51805.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 20
Match NameE-valueIdentityDescription
A0A2D2ATM7_9CAUL2.640e-4071.43Uncharacterized protein n=2 Tax=Caulobacter mirabi... [more]
UPI0014133F152.840e-3162.89SDR family NAD(P)-dependent oxidoreductase n=1 Tax... [more]
A0A1W9JYT1_9PROT4.650e-2051.02Protochlorophyllide reductase n=1 Tax=Proteobacter... [more]
UPI001CD902951.630e-1948.98SDR family NAD(P)-dependent oxidoreductase n=1 Tax... [more]
UPI00159FDA878.950e-1950.00SDR family NAD(P)-dependent oxidoreductase n=1 Tax... [more]
A0A258RZD6_9SPHN1.820e-1850.00Uncharacterized protein n=1 Tax=Sphingomonas sp. 2... [more]
A0A258SIW6_9SPHN4.950e-1848.98Uncharacterized protein n=2 Tax=Proteobacteria Tax... [more]
A0A258FXZ9_9SPHN2.620e-1745.92Protochlorophyllide reductase n=2 Tax=unclassified... [more]
UPI000A19517C1.660e-939.80SDR family NAD(P)-dependent oxidoreductase n=1 Tax... [more]
A0A2W4S6Q4_9PROT1.690e-944.44Dehydrogenase n=1 Tax=Alphaproteobacteria bacteriu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig51805contigP-wetherbeei_contig51805:2..298 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog1206744.BAGL01000063_gene4744
PFAMsadh_short
Model size297
Max annot lvl201174|Actinobacteria
KEGG rclassRC01008
KEGG koko:K00218
KEGG ReactionR03845,R06286
KEGG Pathwayko00860,ko01100,ko01110,map00860,map01100,map01110
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.41e-14
EggNOG OGsCOG1028@1|root,COG1028@2|Bacteria,2GM7N@201174|Actinobacteria,4FZJP@85025|Nocardiaceae
EC1.3.1.33
Descriptionshort chain dehydrogenase
Cds size297
COG categoryIQ
BRITEko00000,ko00001,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186777.4496832-CDS-P-wetherbeei_contig51805:1..2981683186777.4496832-CDS-P-wetherbeei_contig51805:1..298Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig51805 2..298 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig51805.1.1prot_P-wetherbeei_contig51805.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig51805 2..298 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig51805.1.1

>prot_P-wetherbeei_contig51805.1.1 ID=prot_P-wetherbeei_contig51805.1.1|Name=mRNA_P-wetherbeei_contig51805.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=99bp
DPGFTPGTGLARDYPGPSGLIFRFLLPLLVKRSDRVSSPENSGRLLAELV
TDRRFAGQRGRYVAVRRDQVIDVPPSAVAHDAELAAKLWDNSAGLVGL*
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mRNA from alignment at P-wetherbeei_contig51805:2..298+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig51805.1.1 ID=mRNA_P-wetherbeei_contig51805.1.1|Name=mRNA_P-wetherbeei_contig51805.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=297bp|location=Sequence derived from alignment at P-wetherbeei_contig51805:2..298+ (Phaeothamnion wetherbeei SAG_119_79)
GATCCGGGCTTCACGCCGGGGACCGGGCTGGCGCGAGACTATCCTGGACC
CTCGGGCCTGATTTTCCGGTTCCTGCTTCCGTTGCTGGTTAAGCGGTCGG
ACCGGGTCAGTTCGCCAGAGAATTCCGGGCGCCTGCTGGCCGAACTCGTG
ACCGACAGGCGGTTCGCGGGCCAGCGCGGACGCTATGTGGCGGTGCGCCG
TGATCAGGTGATCGATGTCCCGCCCTCGGCGGTGGCGCACGACGCCGAGC
TGGCGGCAAAGCTGTGGGACAACAGCGCGGGGCTGGTCGGGCTCTAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig51805:2..298+

>mRNA_P-wetherbeei_contig51805.1.1 ID=mRNA_P-wetherbeei_contig51805.1.1|Name=mRNA_P-wetherbeei_contig51805.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=297bp|location=Sequence derived from alignment at P-wetherbeei_contig51805:2..298+ (Phaeothamnion wetherbeei SAG_119_79)
GATCCGGGCTTCACGCCGGGGACCGGGCTGGCGCGAGACTATCCTGGACC
CTCGGGCCTGATTTTCCGGTTCCTGCTTCCGTTGCTGGTTAAGCGGTCGG
ACCGGGTCAGTTCGCCAGAGAATTCCGGGCGCCTGCTGGCCGAACTCGTG
ACCGACAGGCGGTTCGCGGGCCAGCGCGGACGCTATGTGGCGGTGCGCCG
TGATCAGGTGATCGATGTCCCGCCCTCGGCGGTGGCGCACGACGCCGAGC
TGGCGGCAAAGCTGTGGGACAACAGCGCGGGGCTGGTCGGGCTCTAG
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