mRNA_P-wetherbeei_contig518.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig518.3.1
Unique NamemRNA_P-wetherbeei_contig518.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig518.3.1 vs. uniprot
Match: A0A836CB26_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CB26_9STRA)

HSP 1 Score: 92.8 bits (229), Expect = 3.030e-15
Identity = 55/110 (50.00%), Postives = 64/110 (58.18%), Query Frame = 3 
Query: 2748 DAAPYLRWEVLGGPFF-DPATSTVDKGRFRVRDARRFLPHSMRRAADALATGD----GVTLLLGRRAEPPHV-------EQAVTVMFDRGRFNEREAREWWGRNRGRFVD 3041
            D  PY RWE    PFF D ATST DKGRFRVRDAR+F   +MRRAA   + G     G+T+L+G  A            E  +TVMFDRGRFNE EA EWW   R   ++
Sbjct: 1327 DECPYRRWESGASPFFFDRATSTADKGRFRVRDARKFDAATMRRAAVHSSGGSDAEAGITVLVGCEAGGSAAAAPMSGRELVITVMFDRGRFNEEEAAEWWRCRREALLE 1436
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BLAST of mRNA_P-wetherbeei_contig518.3.1 vs. uniprot
Match: A0A6S9K3R8_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9K3R8_HETAK)

HSP 1 Score: 83.6 bits (205), Expect = 4.670e-15
Identity = 43/93 (46.24%), Postives = 57/93 (61.29%), Query Frame = 3 
Query: 2760 YLRWEVLGGPFFDPATSTVDKGRFRVRDARRFLPHSMRRAADALATGDGVTLLLGRRAEPPHVEQAVTVMFDRGRFNEREAREWWGRNRGRFV 3038
            Y ++E     FFD  +S+ DKGRFRV DA+ F   +M R  D+     GVTLL+G R +   VEQ +TV+FDR  F E +A+ WW  NR RF+
Sbjct:   51 YQKYESGLVDFFD-ISSSADKGRFRVHDAKLFKADTMHRKVDSATAQGGVTLLMGERIDKQGVEQVITVLFDRKIFEEDDAKVWWSYNRERFI 142
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BLAST of mRNA_P-wetherbeei_contig518.3.1 vs. uniprot
Match: A0A7S2D128_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2D128_9STRA)

HSP 1 Score: 80.9 bits (198), Expect = 4.540e-14
Identity = 46/84 (54.76%), Postives = 53/84 (63.10%), Query Frame = 3 
Query: 2787 PFFDPATSTVDKGRFRVRDARRFLPHSMRRAADALATGDGVTLLLGRR----AEPPHVEQAVTVMFDRGRFNEREAREWWGRNR 3026
            PFFD  +S+ DKGRFRV DAR F P SMRRAA     G  + LLLG R    AE P  EQ +T+MFDR  F+E  A +WW  NR
Sbjct:   54 PFFD-LSSSADKGRFRVHDARGFAPESMRRAAHPAEAG--MVLLLGTRPASHAEYPGAEQVITLMFDRAVFSEAAAEKWWNANR 134
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BLAST of mRNA_P-wetherbeei_contig518.3.1 vs. uniprot
Match: A0A8J2SEH2_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SEH2_9STRA)

HSP 1 Score: 80.9 bits (198), Expect = 6.270e-12
Identity = 49/96 (51.04%), Postives = 60/96 (62.50%), Query Frame = 3 
Query: 2751 AAPYLRWEVLGGPFFDPATSTVDKGRFRVRDARRFLPHSMRRAADALATGDGVTLLLGRRAEPPHVEQAVTVMFDRGRFNEREAREWWGRNRGRFV 3038
            A+P    + +G  FFDP TS+ ++GR RVRDAR F P SMRRA       DGV LLLG  AE P  E  + V+FDR +F+ER A +WW R  GR V
Sbjct:  434 ASPVREEDDVG--FFDP-TSSEERGRKRVRDARLFEPSSMRRAV----AEDGVVLLLGELAEHPRTEHVICVLFDRSKFSERAALQWW-REGGREV 521
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BLAST of mRNA_P-wetherbeei_contig518.3.1 vs. uniprot
Match: B8C253_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C253_THAPS)

HSP 1 Score: 60.5 bits (145), Expect = 2.030e-5
Identity = 33/59 (55.93%), Postives = 41/59 (69.49%), Query Frame = 3 
Query: 2757 PYLRWEVLGGPFFDPATSTVDKGRFRVRDARRFLPHSMRRAA-DALATGDGVTLLLGRR 2930
            PY  +E     FFD  TST +KGRFRVRDAR FLP +MR+ +  A A  +GVTLL+G+R
Sbjct:  779 PYKLYERSESNFFDKETSTDEKGRFRVRDARGFLPETMRKISYQAKAGEEGVTLLVGKR 837
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig518.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A836CB26_9STRA3.030e-1550.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6S9K3R8_HETAK4.670e-1546.24Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2D128_9STRA4.540e-1454.76Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A8J2SEH2_9STRA6.270e-1251.04Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
B8C253_THAPS2.030e-555.93Uncharacterized protein n=1 Tax=Thalassiosira pseu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig518contigP-wetherbeei_contig518:5385..8771 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FPL4
Model size3360
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue2.28e-11
EggNOG OGs2CXNP@1|root,2RYR1@2759|Eukaryota
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-05_005720.1
Cds size1851
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186777.2734652-UTR-P-wetherbeei_contig518:5384..56251683186777.2734652-UTR-P-wetherbeei_contig518:5384..5625Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig518 5385..5625 -
1683186777.291734-UTR-P-wetherbeei_contig518:7476..76621683186777.291734-UTR-P-wetherbeei_contig518:7476..7662Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig518 7477..7662 -
1683186777.2996695-UTR-P-wetherbeei_contig518:7689..87711683186777.2996695-UTR-P-wetherbeei_contig518:7689..8771Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig518 7690..8771 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186777.283172-CDS-P-wetherbeei_contig518:5625..74761683186777.283172-CDS-P-wetherbeei_contig518:5625..7476Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig518 5626..7476 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig518.3.1prot_P-wetherbeei_contig518.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig518 5626..7476 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig518.3.1

>prot_P-wetherbeei_contig518.3.1 ID=prot_P-wetherbeei_contig518.3.1|Name=mRNA_P-wetherbeei_contig518.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=617bp
MAAAVAAPALRSASADGAMMLGAGGGGGAKGGFNGRGGSGGGSGNADEAD
VAAMDSERFYDLAVRRIIQRQAAAATGSSGANGGSGNDRGSGGGGGGITL
DPALENHAAWNGPAPSTRRLSVGAGSGVGGRGRRGSSVSGSAGAQPAPRR
GSGRQANRLSPYACGTQPVGDRRRSSQREKQSGVDAAIGSSYSDSYGRFE
WPAELGDVGSGSSGAAGPAAAAHVNLAPAHDPNDSLGSFQNEKRGAEASD
SYLLGPGATSDTGMADRCPQWMATAAAAVAGPQGDDDGYDEDLFGGGGKY
ARAPGGSRGNNEGWFTREGADNAETGNNSSSSNGRCKVGHDAAAAAAGDA
PQEDPWYGFRSDCGAPRREAAHAEVYEPASPSAALAAVAAAADTASASAA
AAAAAARAKLGASGFAEDGQASAGAATAGVAVAAPAHGATTFGNGADSSY
GNRAAPSNGTAAAIAGAASAAAAGEGSAASAAAPSWASFGAVADAAPYLR
WEVLGGPFFDPATSTVDKGRFRVRDARRFLPHSMRRAADALATGDGVTLL
LGRRAEPPHVEQAVTVMFDRGRFNEREAREWWGRNRGRFVDADADAVVAA
AAAAGLAGAAGDGGGA*
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mRNA from alignment at P-wetherbeei_contig518:5385..8771-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig518.3.1 ID=mRNA_P-wetherbeei_contig518.3.1|Name=mRNA_P-wetherbeei_contig518.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=3387bp|location=Sequence derived from alignment at P-wetherbeei_contig518:5385..8771- (Phaeothamnion wetherbeei SAG_119_79)
GCAGCGGGGGCCACAGCATCAGAAGGCAACGGCAGCGGCAGCGGTGGCGG
CGAGAAAGGCGATCCGGGAGGAATGGCAGCGCCGATGCACGGCTCGGATA
TGCTGTCGGCGGACCTGGAGGCATTATTGCAGGCAGATCCGGAGGCGGCG
GAGCTCATGCACCGGCTCCGTGCCGCCGGGTTGGACGTCGCCGCTGCCGT
CTGCGGAGATGGCCGAAGAAGATCCACCCCGCGCGGTGGCCATTGCGCCT
CCGGCACCCGAAGAGGCAGCGGCGACAGCGACAGTTATAGCGGCAGCGGC
GGAAGCGGCGGCGGCGGTGACCGCCGGACGGCAGCGGGACCGCCAGTGGA
AAGCGGCGCTGACGAACTCTTGGCGGCGCGACCGTCCCGCGAGGCGGCCG
CAGGAGGTCCGTCCAGCGCCCGTAGCGGCAGGGCCGCCTCGGAAGCGTCA
TCGGCGGTTTTCGCTTCTGTTACCGCCGACGGTAATGGCTGCGGCGGTAA
CTGCGGCGGCGGTGGGCTGTCGGCACCGGGGTGCGGCGGCGTCATCAGCC
TGATGGGGCAGCTGCTCCAATGCGGGCTGCTGGACCGGCAGCATGAGTGG
GAGCGGGCGCGCGCCGAGAAGATCGAGGGGGCGCGGCGACGGCGGGAGGA
GGTGGAGGCGGCGGAGGAACGTGAGGCCGCAGCTGGCCCCAACCCCCAGG
TGCGATCCTTCTGTTGTCTCCGTTGCTTCTTTTTTGGACTTCGATGTGCC
CATTGCAGCCAAGAGGCTCCACCGTGCCAAGAGGTTCTGTTCACGTCTTC
TTGCATGGCTGTCCTATTAAACACGTCTTCTGTGTCTGCTTGCCTCATTT
CGGGCCTCCTGCCTATTCCCACTCTTCCATGCGACTGCCTTACTTTTGAC
GCACCGAATGTGACATTGCACATCCTTCCCACGCCTCATCAAACTCTTGC
CCTTATGGATGGCTGCTTTCTGTTTTGCCCGAGACGCAATAACAAACACA
GCTGGCATCGAGCCGCCAGAGCTGGGACGCGGCCAAGGCCGCCCACGCCC
TGGCGGCACGGCGGCAGGCCGAAGATGATGCCGTCCGCCGCCGCCACCGC
GAGCTCAAGCGCCGCTTCGAGGAGGCCCGCCGCGGCGCGCTGCTGGCCGC
CGCCGAGCGGCACCGGGCGGCAGCGGCGGCACGGCGGGCGCGTGCGCTGC
GCGAGGCGCAGGAGCGCTACCAGGCGGCGCAGCAGCAGCAGCAGCAGGAA
CAAGAGCAGCAACTTCAAGAACTGGAGCAGCGGCAACAGCCGGGAATGGC
GGCAGCGGTGGCGGCGCCAGCTCTGAGGTCGGCATCGGCAGACGGAGCGA
TGATGCTTGGCGCTGGCGGCGGCGGCGGGGCTAAGGGCGGTTTTAATGGC
AGGGGCGGTAGCGGCGGTGGCAGCGGCAATGCGGACGAGGCTGACGTCGC
CGCGATGGACAGCGAGAGGTTTTACGATTTGGCAGTGCGTCGCATCATCC
AGCGGCAGGCGGCCGCCGCCACCGGCAGCAGCGGGGCTAACGGCGGCAGC
GGCAACGACCGCGGCAGCGGGGGCGGCGGTGGCGGCATCACTCTTGACCC
CGCGTTGGAGAACCACGCTGCTTGGAACGGGCCTGCGCCGTCCACAAGAA
GGCTGTCCGTCGGCGCTGGCAGTGGGGTTGGCGGGCGTGGCAGGAGAGGT
AGTAGTGTCAGCGGTAGTGCGGGCGCGCAGCCGGCGCCGAGGCGGGGCAG
CGGCCGGCAGGCGAACCGGTTGAGCCCGTATGCTTGTGGCACACAGCCGG
TCGGCGACCGCCGCCGGTCCAGCCAGCGCGAGAAGCAGTCCGGAGTTGAC
GCTGCCATTGGCAGCAGTTACAGCGACAGTTATGGCAGGTTTGAGTGGCC
GGCGGAGCTTGGCGACGTCGGTAGCGGCAGCAGCGGCGCGGCCGGGCCGG
CAGCAGCAGCCCACGTCAATCTGGCACCCGCCCACGATCCCAACGATAGC
CTCGGAAGTTTCCAGAACGAAAAAAGAGGCGCCGAAGCGTCGGACAGCTA
CCTGCTGGGCCCTGGCGCCACTTCCGATACGGGAATGGCCGACCGGTGCC
CACAATGGATGGCTACAGCGGCTGCCGCTGTCGCCGGCCCACAAGGCGAC
GACGACGGTTACGACGAAGACCTGTTCGGCGGCGGCGGCAAGTACGCGAG
AGCGCCGGGCGGCAGCCGCGGCAATAATGAAGGCTGGTTCACTCGTGAAG
GCGCTGATAACGCCGAAACCGGCAACAACAGCAGCAGCAGCAACGGGAGA
TGCAAAGTCGGCCACGATGCAGCGGCGGCAGCGGCAGGTGACGCACCGCA
GGAGGATCCCTGGTACGGATTTCGCAGTGACTGCGGCGCCCCGCGACGTG
AGGCCGCGCACGCGGAGGTGTATGAGCCGGCATCGCCATCAGCAGCCCTG
GCCGCGGTCGCCGCAGCAGCGGACACTGCATCCGCATCGGCGGCGGCAGC
AGCAGCCGCGGCGCGCGCAAAGCTCGGCGCTTCGGGCTTTGCAGAGGACG
GTCAGGCTTCGGCCGGCGCTGCCACGGCGGGAGTGGCTGTGGCAGCGCCG
GCACACGGCGCAACGACCTTCGGTAACGGCGCAGATTCGTCCTACGGCAA
CCGCGCTGCTCCCTCAAACGGCACGGCGGCAGCGATAGCGGGTGCGGCGT
CAGCGGCAGCGGCAGGAGAGGGTTCGGCAGCTTCGGCGGCTGCACCGTCG
TGGGCGTCGTTTGGCGCGGTGGCTGACGCGGCACCGTACCTCCGCTGGGA
GGTCCTCGGCGGGCCCTTCTTCGACCCGGCCACCTCCACCGTCGACAAGG
GCCGCTTTCGCGTGCGGGATGCACGTCGGTTCCTGCCGCACAGCATGCGG
CGAGCGGCGGACGCACTGGCGACGGGTGACGGCGTCACGCTACTATTAGG
CCGCCGCGCCGAGCCGCCGCACGTCGAGCAGGCCGTCACCGTCATGTTCG
ACCGCGGGCGGTTCAACGAGAGGGAAGCCCGCGAGTGGTGGGGGCGCAAC
CGCGGGCGCTTCGTCGATGCTGACGCAGATGCCGTCGTGGCCGCCGCTGC
CGCCGCTGGTCTCGCTGGAGCTGCCGGAGACGGCGGCGGTGCGTGACCAG
CTGACGCGGGAGTAATGTGGCAGCGTTGCCGGTCCCAATGTGTTTTTTTG
GCGTGATCTTGCCACAACTTTTGGTTCGGATCTTGCTGTTGTCGGGGATT
GTGATGCACTTGTGTTTGGGGCCTGAATGTTGCTGCTCTTGTTTGACCAA
CCCTTTCTAGAGATGGCTATCTTGACGCTTTGGCAGACAATGACAATTCT
GTGCAACAGAGCATGTTATTGAAGGCAGACCAAGTGT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig518:5385..8771-

>mRNA_P-wetherbeei_contig518.3.1 ID=mRNA_P-wetherbeei_contig518.3.1|Name=mRNA_P-wetherbeei_contig518.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1851bp|location=Sequence derived from alignment at P-wetherbeei_contig518:5385..8771- (Phaeothamnion wetherbeei SAG_119_79)
ATGGCGGCAGCGGTGGCGGCGCCAGCTCTGAGGTCGGCATCGGCAGACGG
AGCGATGATGCTTGGCGCTGGCGGCGGCGGCGGGGCTAAGGGCGGTTTTA
ATGGCAGGGGCGGTAGCGGCGGTGGCAGCGGCAATGCGGACGAGGCTGAC
GTCGCCGCGATGGACAGCGAGAGGTTTTACGATTTGGCAGTGCGTCGCAT
CATCCAGCGGCAGGCGGCCGCCGCCACCGGCAGCAGCGGGGCTAACGGCG
GCAGCGGCAACGACCGCGGCAGCGGGGGCGGCGGTGGCGGCATCACTCTT
GACCCCGCGTTGGAGAACCACGCTGCTTGGAACGGGCCTGCGCCGTCCAC
AAGAAGGCTGTCCGTCGGCGCTGGCAGTGGGGTTGGCGGGCGTGGCAGGA
GAGGTAGTAGTGTCAGCGGTAGTGCGGGCGCGCAGCCGGCGCCGAGGCGG
GGCAGCGGCCGGCAGGCGAACCGGTTGAGCCCGTATGCTTGTGGCACACA
GCCGGTCGGCGACCGCCGCCGGTCCAGCCAGCGCGAGAAGCAGTCCGGAG
TTGACGCTGCCATTGGCAGCAGTTACAGCGACAGTTATGGCAGGTTTGAG
TGGCCGGCGGAGCTTGGCGACGTCGGTAGCGGCAGCAGCGGCGCGGCCGG
GCCGGCAGCAGCAGCCCACGTCAATCTGGCACCCGCCCACGATCCCAACG
ATAGCCTCGGAAGTTTCCAGAACGAAAAAAGAGGCGCCGAAGCGTCGGAC
AGCTACCTGCTGGGCCCTGGCGCCACTTCCGATACGGGAATGGCCGACCG
GTGCCCACAATGGATGGCTACAGCGGCTGCCGCTGTCGCCGGCCCACAAG
GCGACGACGACGGTTACGACGAAGACCTGTTCGGCGGCGGCGGCAAGTAC
GCGAGAGCGCCGGGCGGCAGCCGCGGCAATAATGAAGGCTGGTTCACTCG
TGAAGGCGCTGATAACGCCGAAACCGGCAACAACAGCAGCAGCAGCAACG
GGAGATGCAAAGTCGGCCACGATGCAGCGGCGGCAGCGGCAGGTGACGCA
CCGCAGGAGGATCCCTGGTACGGATTTCGCAGTGACTGCGGCGCCCCGCG
ACGTGAGGCCGCGCACGCGGAGGTGTATGAGCCGGCATCGCCATCAGCAG
CCCTGGCCGCGGTCGCCGCAGCAGCGGACACTGCATCCGCATCGGCGGCG
GCAGCAGCAGCCGCGGCGCGCGCAAAGCTCGGCGCTTCGGGCTTTGCAGA
GGACGGTCAGGCTTCGGCCGGCGCTGCCACGGCGGGAGTGGCTGTGGCAG
CGCCGGCACACGGCGCAACGACCTTCGGTAACGGCGCAGATTCGTCCTAC
GGCAACCGCGCTGCTCCCTCAAACGGCACGGCGGCAGCGATAGCGGGTGC
GGCGTCAGCGGCAGCGGCAGGAGAGGGTTCGGCAGCTTCGGCGGCTGCAC
CGTCGTGGGCGTCGTTTGGCGCGGTGGCTGACGCGGCACCGTACCTCCGC
TGGGAGGTCCTCGGCGGGCCCTTCTTCGACCCGGCCACCTCCACCGTCGA
CAAGGGCCGCTTTCGCGTGCGGGATGCACGTCGGTTCCTGCCGCACAGCA
TGCGGCGAGCGGCGGACGCACTGGCGACGGGTGACGGCGTCACGCTACTA
TTAGGCCGCCGCGCCGAGCCGCCGCACGTCGAGCAGGCCGTCACCGTCAT
GTTCGACCGCGGGCGGTTCAACGAGAGGGAAGCCCGCGAGTGGTGGGGGC
GCAACCGCGGGCGCTTCGTCGATGCTGACGCAGATGCCGTCGTGGCCGCC
GCTGCCGCCGCTGGTCTCGCTGGAGCTGCCGGAGACGGCGGCGGTGCGTG
A
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