mRNA_P-wetherbeei_contig51781.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig51781.1.1
Unique NamemRNA_P-wetherbeei_contig51781.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig51781.1.1 vs. uniprot
Match: A0A2S7K0B6_9PROT (Aldehyde-activating protein n=1 Tax=Marinicaulis flavus TaxID=2058213 RepID=A0A2S7K0B6_9PROT)

HSP 1 Score: 74.7 bits (182), Expect = 7.040e-16
Identity = 29/47 (61.70%), Postives = 37/47 (78.72%), Query Frame = 1
Query:    1 VKAFYVPRSNPDGYSVNLRCLDTRAFTDIRIDAFDGRQWEQHAARLA 141
            VK+FY+PRSNPDGY++NLRC+D   F  + I  FDG+ WE+HA RLA
Sbjct:   79 VKSFYIPRSNPDGYALNLRCMDREQFAKVTIQPFDGQHWEEHAGRLA 125          
BLAST of mRNA_P-wetherbeei_contig51781.1.1 vs. uniprot
Match: UPI0003B3BECC (GFA family protein n=1 Tax=Nevskia ramosa TaxID=64002 RepID=UPI0003B3BECC)

HSP 1 Score: 73.9 bits (180), Expect = 1.410e-15
Identity = 30/47 (63.83%), Postives = 36/47 (76.60%), Query Frame = 1
Query:    1 VKAFYVPRSNPDGYSVNLRCLDTRAFTDIRIDAFDGRQWEQHAARLA 141
            +K+FYVPRSNPDG+SVNL CLD  +   + IDAFDG+ WEQH   LA
Sbjct:   80 IKSFYVPRSNPDGFSVNLNCLDAGSIESVEIDAFDGQNWEQHGESLA 126          
BLAST of mRNA_P-wetherbeei_contig51781.1.1 vs. uniprot
Match: A0A523JU34_9GAMM (GFA family protein n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A523JU34_9GAMM)

HSP 1 Score: 73.6 bits (179), Expect = 1.860e-15
Identity = 32/50 (64.00%), Postives = 35/50 (70.00%), Query Frame = 1
Query:    1 VKAFYVPRSNPDGYSVNLRCLDTRAFTDIRIDAFDGRQWEQHAARLAERT 150
            VK+FY+PRSNPDGYSVN RCLD    T + ID FDGR WE HA  L   T
Sbjct:   77 VKSFYIPRSNPDGYSVNARCLDPGTVTSMTIDTFDGRNWEAHAHTLRHLT 126          
BLAST of mRNA_P-wetherbeei_contig51781.1.1 vs. uniprot
Match: A0A7C3NTN1_9DELT (GFA family protein n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A7C3NTN1_9DELT)

HSP 1 Score: 73.9 bits (180), Expect = 1.970e-15
Identity = 31/50 (62.00%), Postives = 38/50 (76.00%), Query Frame = 1
Query:    1 VKAFYVPRSNPDGYSVNLRCLDTRAFTDIRIDAFDGRQWEQHAARLAERT 150
            +K+FYVPRSNPDG SVN RCLD R    +R+  FDGR WE++AA+LA  T
Sbjct:   92 IKSFYVPRSNPDGISVNARCLDGRTIKKVRVKRFDGRHWEENAAKLAHLT 141          
BLAST of mRNA_P-wetherbeei_contig51781.1.1 vs. uniprot
Match: A0A357L5H9_9PROT (Aldehyde-activating protein n=1 Tax=Parvularcula sp. TaxID=1979207 RepID=A0A357L5H9_9PROT)

HSP 1 Score: 73.6 bits (179), Expect = 2.000e-15
Identity = 32/47 (68.09%), Postives = 37/47 (78.72%), Query Frame = 1
Query:    1 VKAFYVPRSNPDGYSVNLRCLDTRAFTDIRIDAFDGRQWEQHAARLA 141
            VK+FYVPRSNPDGYS+NL C+D   F  I I AFDGR WE++AA LA
Sbjct:   79 VKSFYVPRSNPDGYSLNLNCMDRAQFRSIEIRAFDGRNWEENAAGLA 125          
BLAST of mRNA_P-wetherbeei_contig51781.1.1 vs. uniprot
Match: A0A850SXH2_9PROT (GFA family protein n=1 Tax=Parvularculaceae bacterium TaxID=2510335 RepID=A0A850SXH2_9PROT)

HSP 1 Score: 71.2 bits (173), Expect = 2.340e-15
Identity = 29/47 (61.70%), Postives = 34/47 (72.34%), Query Frame = 1
Query:    1 VKAFYVPRSNPDGYSVNLRCLDTRAFTDIRIDAFDGRQWEQHAARLA 141
            +K+FYVPRSNPDGYS+NL C+D   F  +   AFDGR WE HA  LA
Sbjct:    1 IKSFYVPRSNPDGYSLNLNCMDRTQFKSVESRAFDGRNWEAHAGELA 47          
BLAST of mRNA_P-wetherbeei_contig51781.1.1 vs. uniprot
Match: A0A1G8XG58_9GAMM (Uncharacterized conserved protein n=1 Tax=Microbulbifer yueqingensis TaxID=658219 RepID=A0A1G8XG58_9GAMM)

HSP 1 Score: 72.8 bits (177), Expect = 4.520e-15
Identity = 30/47 (63.83%), Postives = 38/47 (80.85%), Query Frame = 1
Query:    1 VKAFYVPRSNPDGYSVNLRCLDTRAFTDIRIDAFDGRQWEQHAARLA 141
            +K+FYVPRSNPDGYS+NLRCLD R    +R++ FDG+ WE+HA  LA
Sbjct:   85 IKSFYVPRSNPDGYSINLRCLDERP-AGVRVEPFDGKNWERHAGALA 130          
BLAST of mRNA_P-wetherbeei_contig51781.1.1 vs. uniprot
Match: A0A534VG19_9DELT (GFA family protein n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A534VG19_9DELT)

HSP 1 Score: 72.8 bits (177), Expect = 4.850e-15
Identity = 29/47 (61.70%), Postives = 36/47 (76.60%), Query Frame = 1
Query:    1 VKAFYVPRSNPDGYSVNLRCLDTRAFTDIRIDAFDGRQWEQHAARLA 141
            +K+FYVPRSNPDGYSVN+RCLD     +I +  FDG+ WEQHA  L+
Sbjct:   84 IKSFYVPRSNPDGYSVNVRCLDPSTVKNINVSQFDGQNWEQHAGELS 130          
BLAST of mRNA_P-wetherbeei_contig51781.1.1 vs. uniprot
Match: UPI001411B480 (GFA family protein n=1 Tax=Caulobacter sp. SLTY TaxID=2683262 RepID=UPI001411B480)

HSP 1 Score: 71.6 bits (174), Expect = 5.560e-15
Identity = 32/47 (68.09%), Postives = 36/47 (76.60%), Query Frame = 1
Query:    1 VKAFYVPRSNPDGYSVNLRCLDTRAFTDIRIDAFDGRQWEQHAARLA 141
            VKAFY PRSNPDG+SVN RCLD     D+RI+AFDG+ WE H A LA
Sbjct:   46 VKAFYRPRSNPDGWSVNARCLDDLDGIDLRIEAFDGQNWEAHGASLA 92          
BLAST of mRNA_P-wetherbeei_contig51781.1.1 vs. uniprot
Match: A0A7Z1R108_9BACT (Aldehyde-activating protein n=1 Tax=Holophagae bacterium TaxID=2073116 RepID=A0A7Z1R108_9BACT)

HSP 1 Score: 72.4 bits (176), Expect = 5.820e-15
Identity = 29/48 (60.42%), Postives = 35/48 (72.92%), Query Frame = 1
Query:    1 VKAFYVPRSNPDGYSVNLRCLDTRAFTDIRIDAFDGRQWEQHAARLAE 144
            +K+FYVPRSNPDG SVN+RCLD      +R+  FDGR WE HA  LA+
Sbjct:   77 IKSFYVPRSNPDGISVNVRCLDPATIESVRVTTFDGRNWEAHAGELAQ 124          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig51781.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2S7K0B6_9PROT7.040e-1661.70Aldehyde-activating protein n=1 Tax=Marinicaulis f... [more]
UPI0003B3BECC1.410e-1563.83GFA family protein n=1 Tax=Nevskia ramosa TaxID=64... [more]
A0A523JU34_9GAMM1.860e-1564.00GFA family protein n=1 Tax=Gammaproteobacteria bac... [more]
A0A7C3NTN1_9DELT1.970e-1562.00GFA family protein n=1 Tax=Deltaproteobacteria bac... [more]
A0A357L5H9_9PROT2.000e-1568.09Aldehyde-activating protein n=1 Tax=Parvularcula s... [more]
A0A850SXH2_9PROT2.340e-1561.70GFA family protein n=1 Tax=Parvularculaceae bacter... [more]
A0A1G8XG58_9GAMM4.520e-1563.83Uncharacterized conserved protein n=1 Tax=Microbul... [more]
A0A534VG19_9DELT4.850e-1561.70GFA family protein n=1 Tax=Deltaproteobacteria bac... [more]
UPI001411B4805.560e-1568.09GFA family protein n=1 Tax=Caulobacter sp. SLTY Ta... [more]
A0A7Z1R108_9BACT5.820e-1560.42Aldehyde-activating protein n=1 Tax=Holophagae bac... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig51781contigP-wetherbeei_contig51781:1..159 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog1382303.JPOM01000001_gene1312
PFAMsGFA
Model size159
Max annot lvl204458|Caulobacterales
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue1.27e-16
EggNOG OGsCOG3791@1|root,COG3791@2|Bacteria,1RHWZ@1224|Proteobacteria,2UBDG@28211|Alphaproteobacteria,2KK45@204458|Caulobacterales
DescriptionGlutathione-dependent formaldehyde-activating enzyme
Cds size159
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186777.0651782-CDS-P-wetherbeei_contig51781:0..1591683186777.0651782-CDS-P-wetherbeei_contig51781:0..159Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig51781 1..159 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig51781.1.1prot_P-wetherbeei_contig51781.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig51781 1..159 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig51781.1.1

>prot_P-wetherbeei_contig51781.1.1 ID=prot_P-wetherbeei_contig51781.1.1|Name=mRNA_P-wetherbeei_contig51781.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=53bp
VKAFYVPRSNPDGYSVNLRCLDTRAFTDIRIDAFDGRQWEQHAARLAERT
AQ*
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mRNA from alignment at P-wetherbeei_contig51781:1..159+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig51781.1.1 ID=mRNA_P-wetherbeei_contig51781.1.1|Name=mRNA_P-wetherbeei_contig51781.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=159bp|location=Sequence derived from alignment at P-wetherbeei_contig51781:1..159+ (Phaeothamnion wetherbeei SAG_119_79)
GTCAAGGCCTTCTATGTGCCGCGCTCCAACCCCGATGGCTACAGTGTCAA CCTGCGCTGTCTCGATACCCGCGCTTTCACCGACATTCGCATTGATGCTT TTGATGGCCGGCAGTGGGAACAACACGCCGCGCGCCTCGCGGAGCGTACC GCGCAGTAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig51781:1..159+

>mRNA_P-wetherbeei_contig51781.1.1 ID=mRNA_P-wetherbeei_contig51781.1.1|Name=mRNA_P-wetherbeei_contig51781.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=159bp|location=Sequence derived from alignment at P-wetherbeei_contig51781:1..159+ (Phaeothamnion wetherbeei SAG_119_79)
GTCAAGGCCTTCTATGTGCCGCGCTCCAACCCCGATGGCTACAGTGTCAA
CCTGCGCTGTCTCGATACCCGCGCTTTCACCGACATTCGCATTGATGCTT
TTGATGGCCGGCAGTGGGAACAACACGCCGCGCGCCTCGCGGAGCGTACC
GCGCAGTAG
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