mRNA_P-wetherbeei_contig12279.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig12279.2.1
Unique NamemRNA_P-wetherbeei_contig12279.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig12279.2.1 vs. uniprot
Match: A0A6H5KH81_9PHAE (PNPLA domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KH81_9PHAE)

HSP 1 Score: 89.7 bits (221), Expect = 2.330e-19
Identity = 42/68 (61.76%), Postives = 52/68 (76.47%), Query Frame = 1
Query:    1 NPVSQALIHRLSVKSMPFARSDGLKIGLAIEGGGMRGCVSAGMASCLHYLGLQPCFDAVYGSSAGSLV 204
            +P  QAL+ R +  + P    DG +IGLAIEGGGMRGCV+AGMASCLH+LG+   FD VYG+SAGSL+
Sbjct:  352 HPAVQALLERATAGTKPSMHGDGRRIGLAIEGGGMRGCVAAGMASCLHFLGMADSFDCVYGASAGSLI 419          
BLAST of mRNA_P-wetherbeei_contig12279.2.1 vs. uniprot
Match: D8LUD0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LUD0_ECTSI)

HSP 1 Score: 89.7 bits (221), Expect = 2.380e-19
Identity = 42/68 (61.76%), Postives = 52/68 (76.47%), Query Frame = 1
Query:    1 NPVSQALIHRLSVKSMPFARSDGLKIGLAIEGGGMRGCVSAGMASCLHYLGLQPCFDAVYGSSAGSLV 204
            +P  QAL+ R +  + P    DG +IGLAIEGGGMRGCV+AGMASCLH+LG+   FD VYG+SAGSL+
Sbjct:  231 HPAVQALLERATAGTKPSMHGDGRRIGLAIEGGGMRGCVAAGMASCLHFLGMADSFDCVYGASAGSLI 298          
BLAST of mRNA_P-wetherbeei_contig12279.2.1 vs. uniprot
Match: W7TRM8_9STRA (Acyl transferase/acyl hydrolase/lysophospholipase n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TRM8_9STRA)

HSP 1 Score: 87.4 bits (215), Expect = 4.710e-19
Identity = 42/68 (61.76%), Postives = 56/68 (82.35%), Query Frame = 1
Query:    1 NPVSQALIHRLSVKSMPFARSDGLKIGLAIEGGGMRGCVSAGMASCLHYLGLQPCFDAVYGSSAGSLV 204
            +PV+ A+  R++ +S P AR+DGLKIGL++EGGGMRGCV AGM + L++LGL+  FD VYGSSAGSL+
Sbjct:  211 HPVAAAIHARIASRSTPGARTDGLKIGLSLEGGGMRGCVGAGMLAALNHLGLRDAFDVVYGSSAGSLM 278          
BLAST of mRNA_P-wetherbeei_contig12279.2.1 vs. uniprot
Match: R1EZD5_EMIHU (PNPLA domain-containing protein n=2 Tax=Emiliania huxleyi TaxID=2903 RepID=R1EZD5_EMIHU)

HSP 1 Score: 87.8 bits (216), Expect = 9.980e-19
Identity = 42/68 (61.76%), Postives = 55/68 (80.88%), Query Frame = 1
Query:    1 NPVSQALIHRLSVKSMPFARSDGLKIGLAIEGGGMRGCVSAGMASCLHYLGLQPCFDAVYGSSAGSLV 204
            +PV++A+  R +V S P AR+DG+KI LA+EGGGMRGCV+AGM + +H+LGL    DAVYGSSAGSL+
Sbjct:   80 HPVAEAMQARRAVGSRPGARTDGIKIALAVEGGGMRGCVAAGMVAAIHHLGLTDSLDAVYGSSAGSLI 147          
BLAST of mRNA_P-wetherbeei_contig12279.2.1 vs. uniprot
Match: A0A4D9CRA8_9STRA (PNPLA domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CRA8_9STRA)

HSP 1 Score: 87.0 bits (214), Expect = 1.950e-18
Identity = 42/68 (61.76%), Postives = 56/68 (82.35%), Query Frame = 1
Query:    1 NPVSQALIHRLSVKSMPFARSDGLKIGLAIEGGGMRGCVSAGMASCLHYLGLQPCFDAVYGSSAGSLV 204
            +PV+ A+  R++ +S P AR+DGLKIGL++EGGGMRGCV AGM + L++LGL+  FD VYGSSAGSL+
Sbjct:  126 HPVAAAIHARIASRSTPGARTDGLKIGLSLEGGGMRGCVGAGMLAALNHLGLRDTFDVVYGSSAGSLM 193          
BLAST of mRNA_P-wetherbeei_contig12279.2.1 vs. uniprot
Match: L1JLD3_GUITC (PNPLA domain-containing protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1JLD3_GUITC)

HSP 1 Score: 84.3 bits (207), Expect = 1.510e-17
Identity = 42/68 (61.76%), Postives = 49/68 (72.06%), Query Frame = 1
Query:    1 NPVSQALIHRLSVKSMPFARSDGLKIGLAIEGGGMRGCVSAGMASCLHYLGLQPCFDAVYGSSAGSLV 204
            +PV Q L+ R    S P  RSDG K+ LAIEGGGMRGCV+AGMA+ +   G   CFDAVYGSSAGSL+
Sbjct:   30 HPVLQVLMQRRRESSKPGQRSDGFKVALAIEGGGMRGCVAAGMAAAVKDAGFHDCFDAVYGSSAGSLI 97          
BLAST of mRNA_P-wetherbeei_contig12279.2.1 vs. uniprot
Match: A0A8J5XH14_DIALT (PNPLA domain-containing protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XH14_DIALT)

HSP 1 Score: 84.3 bits (207), Expect = 1.680e-17
Identity = 45/68 (66.18%), Postives = 51/68 (75.00%), Query Frame = 1
Query:    1 NPVSQALIHRLSVKSMPFARSDGLKIGLAIEGGGMRGCVSAGMASCLHYLGLQPCFDAVYGSSAGSLV 204
            +PV  AL  R +  S P AR+DGL+IGLAIEGGGMRG V AGM + LH LGL   FDAVYGSSAG+LV
Sbjct:   79 HPVLAALRARAAAGSRPGARADGLRIGLAIEGGGMRGAVGAGMVAALHELGLGDAFDAVYGSSAGALV 146          
BLAST of mRNA_P-wetherbeei_contig12279.2.1 vs. uniprot
Match: A0A6H5KCB2_9PHAE (PNPLA domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCB2_9PHAE)

HSP 1 Score: 82.4 bits (202), Expect = 7.830e-17
Identity = 42/68 (61.76%), Postives = 50/68 (73.53%), Query Frame = 1
Query:    1 NPVSQALIHRLSVKSMPFARSDGLKIGLAIEGGGMRGCVSAGMASCLHYLGLQPCFDAVYGSSAGSLV 204
            +PV + L  R+   + P +  DGLK+GLAIEGGGMRGCVSAGM + +  LGL   FDAVYGSSAGSLV
Sbjct:   31 HPVIEVLRKRVKAGTKPGSHGDGLKVGLAIEGGGMRGCVSAGMIAAVSTLGLMDTFDAVYGSSAGSLV 98          
BLAST of mRNA_P-wetherbeei_contig12279.2.1 vs. uniprot
Match: L1IPE5_GUITC (PNPLA domain-containing protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1IPE5_GUITC)

HSP 1 Score: 80.9 bits (198), Expect = 2.830e-16
Identity = 40/66 (60.61%), Postives = 49/66 (74.24%), Query Frame = 1
Query:    7 VSQALIHRLSVKSMPFARSDGLKIGLAIEGGGMRGCVSAGMASCLHYLGLQPCFDAVYGSSAGSLV 204
            V + L  RL  +S P  R D  K+GL IEGGGMRGCVSAGMA+ + +LG+Q  FDA+YGSSAGSL+
Sbjct:   87 VLKILGDRLRSRSQPGKRGDKFKLGLVIEGGGMRGCVSAGMAAAIEHLGMQEAFDAIYGSSAGSLI 152          
BLAST of mRNA_P-wetherbeei_contig12279.2.1 vs. uniprot
Match: UPI00082B1C80 (patatin-like phospholipase family protein n=1 Tax=Microtetraspora fusca TaxID=1997 RepID=UPI00082B1C80)

HSP 1 Score: 79.0 bits (193), Expect = 8.090e-16
Identity = 41/61 (67.21%), Postives = 47/61 (77.05%), Query Frame = 1
Query:   19 LIHRLSVKSMPFARSDGLKIGLAIEGGGMRGCVSAGMASCLHYLGLQPCFDAVYGSSAGSL 201
            L+ R +  S P ARSDG +I LAIEGGGMRG VSAGMA  +H LGL P FDAVYGSSAG++
Sbjct:   14 LVERAAKGSRPGARSDGHRIALAIEGGGMRGTVSAGMALAIHELGLLPLFDAVYGSSAGAI 74          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig12279.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KH81_9PHAE2.330e-1961.76PNPLA domain-containing protein n=1 Tax=Ectocarpus... [more]
D8LUD0_ECTSI2.380e-1961.76Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
W7TRM8_9STRA4.710e-1961.76Acyl transferase/acyl hydrolase/lysophospholipase ... [more]
R1EZD5_EMIHU9.980e-1961.76PNPLA domain-containing protein n=2 Tax=Emiliania ... [more]
A0A4D9CRA8_9STRA1.950e-1861.76PNPLA domain-containing protein n=1 Tax=Nannochlor... [more]
L1JLD3_GUITC1.510e-1761.76PNPLA domain-containing protein n=1 Tax=Guillardia... [more]
A0A8J5XH14_DIALT1.680e-1766.18PNPLA domain-containing protein n=1 Tax=Diacronema... [more]
A0A6H5KCB2_9PHAE7.830e-1761.76PNPLA domain-containing protein n=1 Tax=Ectocarpus... [more]
L1IPE5_GUITC2.830e-1660.61PNPLA domain-containing protein n=1 Tax=Guillardia... [more]
UPI00082B1C808.090e-1667.21patatin-like phospholipase family protein n=1 Tax=... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig12279contigP-wetherbeei_contig12279:1720..1923 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LUD0
PFAMsPatatin
Model size204
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue3.9e-20
EggNOG OGs29GN1@1|root,2RPUA@2759|Eukaryota
DescriptionPatatin-like phospholipase
Cds size204
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185943.93973-CDS-P-wetherbeei_contig12279:1719..19231683185943.93973-CDS-P-wetherbeei_contig12279:1719..1923Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig12279 1720..1923 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig12279.2.1prot_P-wetherbeei_contig12279.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig12279 1720..1923 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig12279.2.1

>prot_P-wetherbeei_contig12279.2.1 ID=prot_P-wetherbeei_contig12279.2.1|Name=mRNA_P-wetherbeei_contig12279.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=68bp
NPVSQALIHRLSVKSMPFARSDGLKIGLAIEGGGMRGCVSAGMASCLHYL
GLQPCFDAVYGSSAGSLV
back to top

mRNA from alignment at P-wetherbeei_contig12279:1720..1923+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig12279.2.1 ID=mRNA_P-wetherbeei_contig12279.2.1|Name=mRNA_P-wetherbeei_contig12279.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=204bp|location=Sequence derived from alignment at P-wetherbeei_contig12279:1720..1923+ (Phaeothamnion wetherbeei SAG_119_79)
AATCCTGTGTCGCAAGCCTTAATCCACAGGTTGTCGGTCAAGTCGATGCC TTTTGCCAGATCCGACGGGCTCAAAATTGGCCTCGCCATCGAAGGAGGCG GAATGAGGGGGTGCGTGAGCGCCGGGATGGCCTCTTGTCTCCACTACCTG GGATTGCAACCGTGCTTCGACGCTGTCTACGGTTCGTCTGCGGGAAGCTT GGTG
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig12279:1720..1923+

>mRNA_P-wetherbeei_contig12279.2.1 ID=mRNA_P-wetherbeei_contig12279.2.1|Name=mRNA_P-wetherbeei_contig12279.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=204bp|location=Sequence derived from alignment at P-wetherbeei_contig12279:1720..1923+ (Phaeothamnion wetherbeei SAG_119_79)
AATCCTGTGTCGCAAGCCTTAATCCACAGGTTGTCGGTCAAGTCGATGCC
TTTTGCCAGATCCGACGGGCTCAAAATTGGCCTCGCCATCGAAGGAGGCG
GAATGAGGGGGTGCGTGAGCGCCGGGATGGCCTCTTGTCTCCACTACCTG
GGATTGCAACCGTGCTTCGACGCTGTCTACGGTTCGTCTGCGGGAAGCTT
GGTG
back to top