mRNA_P-wetherbeei_contig12192.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig12192.1.1
Unique NamemRNA_P-wetherbeei_contig12192.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig12192.1.1 vs. uniprot
Match: A0A847JSW2_9BACT (AAA family ATPase n=1 Tax=Chthonomonadales bacterium TaxID=2282151 RepID=A0A847JSW2_9BACT)

HSP 1 Score: 149 bits (375), Expect = 4.780e-41
Identity = 70/115 (60.87%), Postives = 92/115 (80.00%), Query Frame = 1
Query:   16 LHIESIRIKNFKSFQDATLSDIPSVCLLVGKNGCGKSTVFDVFSFLKDALATNVTKALNRRGGFSEVVTRGQSGPIELEVKFRESGGRLATYSLKVGSEGARGVVLSEVLKFRRG 360
            + IE+I I+N++ F++AT SD+P +C++VG NG GKST+FDVFSFLKDAL  NV  A+ RRGGF E+V+RG+ GPI + +KFRESGGRLATY L++  +G R VV  E+LKFRRG
Sbjct:    1 MQIEAIEIRNYRLFKNATFSDLPKLCVIVGANGSGKSTLFDVFSFLKDALTQNVGAAVARRGGFRELVSRGERGPIGITIKFRESGGRLATYQLEIADDGGRPVVHREILKFRRG 115          
BLAST of mRNA_P-wetherbeei_contig12192.1.1 vs. uniprot
Match: A0A846T377_9CYAN (AAA family ATPase n=1 Tax=Synechococcaceae cyanobacterium SM1_2_3 TaxID=2720456 RepID=A0A846T377_9CYAN)

HSP 1 Score: 146 bits (368), Expect = 5.180e-40
Identity = 70/115 (60.87%), Postives = 92/115 (80.00%), Query Frame = 1
Query:   16 LHIESIRIKNFKSFQDATLSDIPSVCLLVGKNGCGKSTVFDVFSFLKDALATNVTKALNRRGGFSEVVTRGQSGPIELEVKFRESGGRLATYSLKVGSEGARGVVLSEVLKFRRG 360
            + IESI I+N++ FQ+A L ++P + +L+G NG GKST+FDVFSFLKDAL  NV+KA+++RGGF E+++RG SGPI L  KFRE+GGRLATY L + S+G + VV  EVLKFRRG
Sbjct:    1 MQIESIEIRNYRVFQNAVLKNLPKLTVLIGANGVGKSTLFDVFSFLKDALTHNVSKAVSKRGGFRELISRGASGPITLTFKFRETGGRLATYELAIASDGGKPVVEREVLKFRRG 115          
BLAST of mRNA_P-wetherbeei_contig12192.1.1 vs. uniprot
Match: A0A1V5VGN0_9BACT (ATPase_AAA_core domain-containing protein n=1 Tax=bacterium ADurb.Bin236 TaxID=1866925 RepID=A0A1V5VGN0_9BACT)

HSP 1 Score: 146 bits (368), Expect = 5.280e-40
Identity = 69/115 (60.00%), Postives = 89/115 (77.39%), Query Frame = 1
Query:   16 LHIESIRIKNFKSFQDATLSDIPSVCLLVGKNGCGKSTVFDVFSFLKDALATNVTKALNRRGGFSEVVTRGQSGPIELEVKFRESGGRLATYSLKVGSEGARGVVLSEVLKFRRG 360
            +HIESI I+N++ F++A ++DIPS+C+LVG NG GKST+FDVF FL+DAL  NV KAL  RGGF+EV++R   GP+  E+KFRE  G L TYSL +G +  R VV SEVLK+RRG
Sbjct:    1 MHIESISIRNYRVFREANMTDIPSMCVLVGANGTGKSTMFDVFGFLRDALTHNVDKALAMRGGFNEVISRNAEGPVSFEIKFREVNGPLVTYSLSIGLDSGRPVVASEVLKYRRG 115          
BLAST of mRNA_P-wetherbeei_contig12192.1.1 vs. uniprot
Match: UPI001C48E58D (AAA family ATPase n=1 Tax=Elioraea tepida TaxID=2843330 RepID=UPI001C48E58D)

HSP 1 Score: 145 bits (365), Expect = 1.440e-39
Identity = 72/115 (62.61%), Postives = 89/115 (77.39%), Query Frame = 1
Query:   16 LHIESIRIKNFKSFQDATLSDIPSVCLLVGKNGCGKSTVFDVFSFLKDALATNVTKALNRRGGFSEVVTRGQSGPIELEVKFRESGGRLATYSLKVGSEGARGVVLSEVLKFRRG 360
            + IE+I I+N++ F+ A L D+P +C++VG NG GKST+FDVFSFLKDAL  NV  A+ RRGGF E V+RGQ GPI +E+KFRESGGRLATY L+V   G R VV  E+LKFRRG
Sbjct:    1 MQIETIAIENYRLFRQAILRDLPRMCVVVGANGSGKSTLFDVFSFLKDALTQNVGTAVARRGGFHEPVSRGQPGPIRIELKFRESGGRLATYELQVAVAGGRPVVHREILKFRRG 115          
BLAST of mRNA_P-wetherbeei_contig12192.1.1 vs. uniprot
Match: UPI00047616A1 (AAA family ATPase n=1 Tax=Lamprocystis purpurea TaxID=61598 RepID=UPI00047616A1)

HSP 1 Score: 144 bits (363), Expect = 2.840e-39
Identity = 71/115 (61.74%), Postives = 90/115 (78.26%), Query Frame = 1
Query:   16 LHIESIRIKNFKSFQDATLSDIPSVCLLVGKNGCGKSTVFDVFSFLKDALATNVTKALNRRGGFSEVVTRGQSGPIELEVKFRESGGRLATYSLKVGSEGARGVVLSEVLKFRRG 360
            + IESI I N++ F+ A LSD+P + ++VG NG GKST+FDVFSFLK++L  NV  A+ RRGG+ E+V+RG++GPIE+ VKFRESGGRLATY L V  +G R VV  EVLKFRRG
Sbjct:    1 MQIESIEINNYRLFRHAVLSDLPRMSVVVGANGSGKSTLFDVFSFLKESLTQNVASAVARRGGYRELVSRGETGPIEIVVKFRESGGRLATYQLAVAEDGGRPVVHREVLKFRRG 115          
BLAST of mRNA_P-wetherbeei_contig12192.1.1 vs. uniprot
Match: A0A7V4IG69_9BACT (Chromosome segregation protein SMC n=1 Tax=Verrucomicrobia subdivision 3 bacterium TaxID=2052186 RepID=A0A7V4IG69_9BACT)

HSP 1 Score: 142 bits (359), Expect = 1.100e-38
Identity = 68/113 (60.18%), Postives = 88/113 (77.88%), Query Frame = 1
Query:   22 IESIRIKNFKSFQDATLSDIPSVCLLVGKNGCGKSTVFDVFSFLKDALATNVTKALNRRGGFSEVVTRGQSGPIELEVKFRESGGRLATYSLKVGSEGARGVVLSEVLKFRRG 360
            IESI IKN++ F+ A + D+P    +VG+NG GKS++FDVFSF+KDAL  NV+KA+N+RGGF E+V+RG  GPIE+ +KFRESGG+LATY L + +E    VV  EVLKFRRG
Sbjct:    3 IESIEIKNYRMFKHAAMQDLPRFATVVGENGSGKSSLFDVFSFMKDALQLNVSKAVNKRGGFRELVSRGALGPIEISIKFRESGGKLATYHLAIAAENGSSVVQREVLKFRRG 115          
BLAST of mRNA_P-wetherbeei_contig12192.1.1 vs. uniprot
Match: A0A484HI78_9DELT (DNA replication and repair protein RecF n=1 Tax=uncultured Desulfobacteraceae bacterium TaxID=218296 RepID=A0A484HI78_9DELT)

HSP 1 Score: 142 bits (358), Expect = 1.550e-38
Identity = 72/115 (62.61%), Postives = 89/115 (77.39%), Query Frame = 1
Query:   16 LHIESIRIKNFKSFQDATLSDIPSVCLLVGKNGCGKSTVFDVFSFLKDALATNVTKALNRRGGFSEVVTRGQSGPIELEVKFRESGGRLATYSLKVGSEGARGVVLSEVLKFRRG 360
            + IESI I+N++ F+ A   ++P + L+VG NG GKST+FDVFSFLKDALA NV  A+ RRGGF E+V+R + GPI + VKFRESGGRLATY L VG +GAR VV  E+LKFRRG
Sbjct:    1 MQIESIEIRNYRLFRRAKFKNLPRLTLVVGANGSGKSTLFDVFSFLKDALAQNVGVAVARRGGFRELVSRSEKGPIGITVKFRESGGRLATYQLDVGEDGARPVVDREILKFRRG 115          
BLAST of mRNA_P-wetherbeei_contig12192.1.1 vs. uniprot
Match: UPI001C9A20E8 (AAA family ATPase n=2 Tax=unclassified Methylosinus TaxID=2624500 RepID=UPI001C9A20E8)

HSP 1 Score: 142 bits (358), Expect = 1.700e-38
Identity = 68/120 (56.67%), Postives = 91/120 (75.83%), Query Frame = 1
Query:    1 MSLKSLHIESIRIKNFKSFQDATLSDIPSVCLLVGKNGCGKSTVFDVFSFLKDALATNVTKALNRRGGFSEVVTRGQSGPIELEVKFRESGGRLATYSLKVGSEGARGVVLSEVLKFRRG 360
            M  + + IES+ I+N++ F D   SD+  + ++VG NG GKST+FDVFSFLK+AL  NV  A+ RRGGF+E+V+RG+ GPI + VKFRESGGRLATY L++ ++G R VV  E+LKFRRG
Sbjct:    1 MMSQPMQIESLEIRNYRLFNDMKFSDLARLTVVVGANGSGKSTLFDVFSFLKEALTQNVATAVTRRGGFNELVSRGEKGPIGITVKFRESGGRLATYDLQIAADGGRAVVEREILKFRRG 120          
BLAST of mRNA_P-wetherbeei_contig12192.1.1 vs. uniprot
Match: Q2LQ15_SYNAS (ATPase n=2 Tax=Syntrophus TaxID=43773 RepID=Q2LQ15_SYNAS)

HSP 1 Score: 142 bits (358), Expect = 1.730e-38
Identity = 70/120 (58.33%), Postives = 91/120 (75.83%), Query Frame = 1
Query:    1 MSLKSLHIESIRIKNFKSFQDATLSDIPSVCLLVGKNGCGKSTVFDVFSFLKDALATNVTKALNRRGGFSEVVTRGQSGPIELEVKFRESGGRLATYSLKVGSEGARGVVLSEVLKFRRG 360
            M ++ + IESI I+N++ F+ A+L+ +  + + VG+NG GKST+FDVFSFLKD+LA N  KA+ RRGGF E+V+RG  GPI + +KFRE+GGRLATY L V  EG R VV  EVLKFRRG
Sbjct:    4 MQIQGMQIESIDIQNYRLFKQASLNKLSRLAVFVGENGAGKSTIFDVFSFLKDSLAQNAAKAVARRGGFKELVSRGTEGPISITLKFRETGGRLATYELSVAFEGGRVVVDREVLKFRRG 123          
BLAST of mRNA_P-wetherbeei_contig12192.1.1 vs. uniprot
Match: A0A518CV79_9BACT (Recombination protein F n=1 Tax=Planctomycetes bacterium Pla163 TaxID=2528008 RepID=A0A518CV79_9BACT)

HSP 1 Score: 141 bits (356), Expect = 3.060e-38
Identity = 68/115 (59.13%), Postives = 91/115 (79.13%), Query Frame = 1
Query:   16 LHIESIRIKNFKSFQDATLSDIPSVCLLVGKNGCGKSTVFDVFSFLKDALATNVTKALNRRGGFSEVVTRGQSGPIELEVKFRESGGRLATYSLKVGSEGARGVVLSEVLKFRRG 360
            + IES+ I+N++ F++A L D+P + ++VG NG GKST+FDVF+FLK+AL  NV  A+ RRGGF E+V+RG++GPIE+ VKFRESGG+LATY L+V  +  R VV  EVLKFRRG
Sbjct:    1 MQIESLEIRNYRLFREAVLRDLPRMTVVVGANGSGKSTLFDVFTFLKEALTQNVATAVARRGGFRELVSRGENGPIEIVVKFRESGGKLATYQLEVAEDAGRPVVHREVLKFRRG 115          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig12192.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A847JSW2_9BACT4.780e-4160.87AAA family ATPase n=1 Tax=Chthonomonadales bacteri... [more]
A0A846T377_9CYAN5.180e-4060.87AAA family ATPase n=1 Tax=Synechococcaceae cyanoba... [more]
A0A1V5VGN0_9BACT5.280e-4060.00ATPase_AAA_core domain-containing protein n=1 Tax=... [more]
UPI001C48E58D1.440e-3962.61AAA family ATPase n=1 Tax=Elioraea tepida TaxID=28... [more]
UPI00047616A12.840e-3961.74AAA family ATPase n=1 Tax=Lamprocystis purpurea Ta... [more]
A0A7V4IG69_9BACT1.100e-3860.18Chromosome segregation protein SMC n=1 Tax=Verruco... [more]
A0A484HI78_9DELT1.550e-3862.61DNA replication and repair protein RecF n=1 Tax=un... [more]
UPI001C9A20E81.700e-3856.67AAA family ATPase n=2 Tax=unclassified Methylosinu... [more]
Q2LQ15_SYNAS1.730e-3858.33ATPase n=2 Tax=Syntrophus TaxID=43773 RepID=Q2LQ15... [more]
A0A518CV79_9BACT3.060e-3859.13Recombination protein F n=1 Tax=Planctomycetes bac... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig12192contigP-wetherbeei_contig12192:3..362 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog56780.SYN_00010
PFAMsAAA_21
Model size360
Max annot lvl28221|Deltaproteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.84e-39
EggNOG OGsCOG4637@1|root,COG4637@2|Bacteria,1PDZN@1224|Proteobacteria,43AAI@68525|delta/epsilon subdivisions,2X2HA@28221|Deltaproteobacteria,2MSEG@213462|Syntrophobacterales
DescriptionAAA ATPase domain
Cds size360
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185941.1728377-CDS-P-wetherbeei_contig12192:2..3621683185941.1728377-CDS-P-wetherbeei_contig12192:2..362Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig12192 3..362 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig12192.1.1prot_P-wetherbeei_contig12192.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig12192 3..362 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig12192.1.1

>prot_P-wetherbeei_contig12192.1.1 ID=prot_P-wetherbeei_contig12192.1.1|Name=mRNA_P-wetherbeei_contig12192.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=120bp
MSLKSLHIESIRIKNFKSFQDATLSDIPSVCLLVGKNGCGKSTVFDVFSF
LKDALATNVTKALNRRGGFSEVVTRGQSGPIELEVKFRESGGRLATYSLK
VGSEGARGVVLSEVLKFRRG
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mRNA from alignment at P-wetherbeei_contig12192:3..362-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig12192.1.1 ID=mRNA_P-wetherbeei_contig12192.1.1|Name=mRNA_P-wetherbeei_contig12192.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=360bp|location=Sequence derived from alignment at P-wetherbeei_contig12192:3..362- (Phaeothamnion wetherbeei SAG_119_79)
ATGTCCCTTAAGTCCCTTCATATCGAGAGCATCCGAATCAAGAACTTCAA GTCTTTTCAAGACGCGACGCTCTCAGACATCCCGTCTGTCTGCTTGCTTG TAGGTAAGAATGGGTGTGGGAAAAGCACCGTCTTTGATGTTTTTAGTTTC TTGAAGGACGCTCTTGCCACGAATGTAACTAAGGCGCTCAATCGAAGAGG TGGATTCTCAGAGGTCGTTACTAGGGGACAGAGTGGGCCCATCGAGCTGG AAGTGAAGTTTCGAGAGTCCGGTGGACGCCTGGCCACGTACTCGTTAAAG GTTGGGAGCGAGGGGGCCCGTGGAGTTGTCCTCTCAGAAGTCCTCAAGTT TCGTCGGGGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig12192:3..362-

>mRNA_P-wetherbeei_contig12192.1.1 ID=mRNA_P-wetherbeei_contig12192.1.1|Name=mRNA_P-wetherbeei_contig12192.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=360bp|location=Sequence derived from alignment at P-wetherbeei_contig12192:3..362- (Phaeothamnion wetherbeei SAG_119_79)
ATGTCCCTTAAGTCCCTTCATATCGAGAGCATCCGAATCAAGAACTTCAA
GTCTTTTCAAGACGCGACGCTCTCAGACATCCCGTCTGTCTGCTTGCTTG
TAGGTAAGAATGGGTGTGGGAAAAGCACCGTCTTTGATGTTTTTAGTTTC
TTGAAGGACGCTCTTGCCACGAATGTAACTAAGGCGCTCAATCGAAGAGG
TGGATTCTCAGAGGTCGTTACTAGGGGACAGAGTGGGCCCATCGAGCTGG
AAGTGAAGTTTCGAGAGTCCGGTGGACGCCTGGCCACGTACTCGTTAAAG
GTTGGGAGCGAGGGGGCCCGTGGAGTTGTCCTCTCAGAAGTCCTCAAGTT
TCGTCGGGGC
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