mRNA_P-wetherbeei_contig12191.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig12191.2.1
Unique NamemRNA_P-wetherbeei_contig12191.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig12191.2.1 vs. uniprot
Match: A0A6H5JQJ4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQJ4_9PHAE)

HSP 1 Score: 68.6 bits (166), Expect = 4.740e-12
Identity = 34/59 (57.63%), Postives = 44/59 (74.58%), Query Frame = 1 
Query:    4 EEDVLLLEERCNDVSVATRKVAAAAITGLLRARPADAFLQIAWVRALLPLAMDPEASCQ 180
            E D  LL+ERCND+S++TRK A  A++ LL  RP+D  LQ AWV ++LPLA DPE +CQ
Sbjct:  548 EADFELLQERCNDISLSTRKAAMGALSSLLMLRPSDETLQKAWVSSVLPLAGDPEQTCQ 606
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BLAST of mRNA_P-wetherbeei_contig12191.2.1 vs. uniprot
Match: D7FP86_ECTSI (Cnd1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FP86_ECTSI)

HSP 1 Score: 67.8 bits (164), Expect = 8.960e-12
Identity = 34/59 (57.63%), Postives = 44/59 (74.58%), Query Frame = 1 
Query:    4 EEDVLLLEERCNDVSVATRKVAAAAITGLLRARPADAFLQIAWVRALLPLAMDPEASCQ 180
            E D  LL+ERCND+S++TRK A  A++ LL  RP+D  LQ AWV ++LPLA DPE +CQ
Sbjct:  684 EADFELLQERCNDMSLSTRKAAMGALSSLLMLRPSDESLQKAWVSSVLPLAGDPEQTCQ 742
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig12191.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JQJ4_9PHAE4.740e-1257.63Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FP86_ECTSI8.960e-1257.63Cnd1 domain-containing protein n=1 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig12191contigP-wetherbeei_contig12191:1763..1942 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FP86
PFAMsCnd1
Model size180
Max annot lvl2759|Eukaryota
KEGG koko:K11491
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.47e-12
EggNOG OGsKOG0413@1|root,KOG0413@2759|Eukaryota
Descriptionmeiotic chromosome condensation
Cds size180
COG categoryO
BRITEko00000,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185941.1389377-CDS-P-wetherbeei_contig12191:1762..19421683185941.1389377-CDS-P-wetherbeei_contig12191:1762..1942Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig12191 1763..1942 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig12191.2.1prot_P-wetherbeei_contig12191.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig12191 1763..1942 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig12191.2.1

>prot_P-wetherbeei_contig12191.2.1 ID=prot_P-wetherbeei_contig12191.2.1|Name=mRNA_P-wetherbeei_contig12191.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=60bp
FEEDVLLLEERCNDVSVATRKVAAAAITGLLRARPADAFLQIAWVRALLP
LAMDPEASCQ
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mRNA from alignment at P-wetherbeei_contig12191:1763..1942-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig12191.2.1 ID=mRNA_P-wetherbeei_contig12191.2.1|Name=mRNA_P-wetherbeei_contig12191.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=180bp|location=Sequence derived from alignment at P-wetherbeei_contig12191:1763..1942- (Phaeothamnion wetherbeei SAG_119_79)
TTTGAAGAGGACGTGCTGCTGCTGGAGGAGCGCTGCAACGACGTGTCGGT
GGCGACCCGCAAGGTGGCGGCCGCCGCCATCACCGGGCTGCTGCGGGCGC
GGCCCGCCGACGCCTTTCTGCAGATAGCCTGGGTCCGCGCGCTGCTGCCG
CTGGCCATGGACCCCGAGGCGTCGTGCCAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig12191:1763..1942-

>mRNA_P-wetherbeei_contig12191.2.1 ID=mRNA_P-wetherbeei_contig12191.2.1|Name=mRNA_P-wetherbeei_contig12191.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=180bp|location=Sequence derived from alignment at P-wetherbeei_contig12191:1763..1942- (Phaeothamnion wetherbeei SAG_119_79)
TTTGAAGAGGACGTGCTGCTGCTGGAGGAGCGCTGCAACGACGTGTCGGT
GGCGACCCGCAAGGTGGCGGCCGCCGCCATCACCGGGCTGCTGCGGGCGC
GGCCCGCCGACGCCTTTCTGCAGATAGCCTGGGTCCGCGCGCTGCTGCCG
CTGGCCATGGACCCCGAGGCGTCGTGCCAG
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