mRNA_P-wetherbeei_contig12187.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig12187.1.1
Unique NamemRNA_P-wetherbeei_contig12187.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig12187.1.1 vs. uniprot
Match: A0A259MWH4_9PROT (NADH-quinone oxidoreductase subunit I n=11 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A259MWH4_9PROT)

HSP 1 Score: 85.5 bits (210), Expect = 6.120e-20
Identity = 41/44 (93.18%), Postives = 43/44 (97.73%), Query Frame = 1 
Query:    1 MASLDRTARAFLLTELVTGFALTLKYMFKPKVTVNYPHEKGPLS 132
            MASLDRTARAFLLTEL+ GFALTLKYMFKPKVTVNYP+EKGPLS
Sbjct:    1 MASLDRTARAFLLTELLAGFALTLKYMFKPKVTVNYPYEKGPLS 44
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BLAST of mRNA_P-wetherbeei_contig12187.1.1 vs. uniprot
Match: A0A1H8XGF3_9PROT (NADH-quinone oxidoreductase subunit I n=2 Tax=unclassified Rhodospirillales TaxID=941843 RepID=A0A1H8XGF3_9PROT)

HSP 1 Score: 81.3 bits (199), Expect = 2.780e-18
Identity = 39/44 (88.64%), Postives = 42/44 (95.45%), Query Frame = 1 
Query:    1 MASLDRTARAFLLTELVTGFALTLKYMFKPKVTVNYPHEKGPLS 132
            MASLDRTAR+FLL+ELV GF LTLKYMFKPKVTVNYP+EKGPLS
Sbjct:    1 MASLDRTARSFLLSELVGGFLLTLKYMFKPKVTVNYPYEKGPLS 44
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BLAST of mRNA_P-wetherbeei_contig12187.1.1 vs. uniprot
Match: A0A5C8PPP5_9HYPH (NADH-quinone oxidoreductase subunit I n=1 Tax=Vineibacter terrae TaxID=2586908 RepID=A0A5C8PPP5_9HYPH)

HSP 1 Score: 80.5 bits (197), Expect = 5.560e-18
Identity = 38/44 (86.36%), Postives = 41/44 (93.18%), Query Frame = 1 
Query:    1 MASLDRTARAFLLTELVTGFALTLKYMFKPKVTVNYPHEKGPLS 132
            MA LDRTARAFLLTE+++GF LTLKYMFKPKVTVNYP EKGPLS
Sbjct:    1 MAFLDRTARAFLLTEVISGFVLTLKYMFKPKVTVNYPFEKGPLS 44
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BLAST of mRNA_P-wetherbeei_contig12187.1.1 vs. uniprot
Match: NUOI_MAGSA (NADH-quinone oxidoreductase subunit I n=17 Tax=Rhodospirillaceae TaxID=41295 RepID=NUOI_MAGSA)

HSP 1 Score: 79.0 bits (193), Expect = 2.220e-17
Identity = 37/44 (84.09%), Postives = 41/44 (93.18%), Query Frame = 1 
Query:    1 MASLDRTARAFLLTELVTGFALTLKYMFKPKVTVNYPHEKGPLS 132
            M+ LDRTARAFLLTELV G ALTL+YMFKPKVT+NYP+EKGPLS
Sbjct:    1 MSFLDRTARAFLLTELVQGLALTLRYMFKPKVTINYPYEKGPLS 44
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BLAST of mRNA_P-wetherbeei_contig12187.1.1 vs. uniprot
Match: A0A6N7AJV1_9PROT (NADH-quinone oxidoreductase subunit I n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A6N7AJV1_9PROT)

HSP 1 Score: 79.0 bits (193), Expect = 2.220e-17
Identity = 38/44 (86.36%), Postives = 40/44 (90.91%), Query Frame = 1 
Query:    1 MASLDRTARAFLLTELVTGFALTLKYMFKPKVTVNYPHEKGPLS 132
            MA LDRTARAFLLTELV G ALTL+YMFKPKVT+NYP EKGPLS
Sbjct:    1 MAFLDRTARAFLLTELVQGMALTLRYMFKPKVTINYPFEKGPLS 44
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BLAST of mRNA_P-wetherbeei_contig12187.1.1 vs. uniprot
Match: A0A199YGA0_9PROT (NADH-quinone oxidoreductase subunit I n=33 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A199YGA0_9PROT)

HSP 1 Score: 77.0 bits (188), Expect = 1.260e-16
Identity = 35/44 (79.55%), Postives = 41/44 (93.18%), Query Frame = 1 
Query:    1 MASLDRTARAFLLTELVTGFALTLKYMFKPKVTVNYPHEKGPLS 132
            M+ +DRTAR+FLL ELV+G ALTLKYMFKPKVT+NYP+EKGPLS
Sbjct:    1 MSFIDRTARSFLLAELVSGMALTLKYMFKPKVTINYPYEKGPLS 44
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BLAST of mRNA_P-wetherbeei_contig12187.1.1 vs. uniprot
Match: A0A1G6XNL8_9PROT (NADH-quinone oxidoreductase subunit I n=15 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A1G6XNL8_9PROT)

HSP 1 Score: 76.6 bits (187), Expect = 1.780e-16
Identity = 36/44 (81.82%), Postives = 40/44 (90.91%), Query Frame = 1 
Query:    1 MASLDRTARAFLLTELVTGFALTLKYMFKPKVTVNYPHEKGPLS 132
            MASLDR AR+ LLTELV+G ALTLKY FKPKVTVNYP+EKGP+S
Sbjct:    1 MASLDRAARSLLLTELVSGMALTLKYFFKPKVTVNYPYEKGPIS 44
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BLAST of mRNA_P-wetherbeei_contig12187.1.1 vs. uniprot
Match: A0A537MZ06_9PROT (NADH-quinone oxidoreductase subunit I n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A537MZ06_9PROT)

HSP 1 Score: 76.3 bits (186), Expect = 2.510e-16
Identity = 34/44 (77.27%), Postives = 41/44 (93.18%), Query Frame = 1 
Query:    1 MASLDRTARAFLLTELVTGFALTLKYMFKPKVTVNYPHEKGPLS 132
            MA+LDRTAR+FLLTELV+GF LTL+YMFKPK T+NYP+E+ PLS
Sbjct:    1 MATLDRTARSFLLTELVSGFMLTLRYMFKPKATINYPYERSPLS 44
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BLAST of mRNA_P-wetherbeei_contig12187.1.1 vs. uniprot
Match: A0A7X2FWS2_9PROT (NADH-quinone oxidoreductase subunit I n=1 Tax=Alphaproteobacteria bacterium HT1-32 TaxID=2665153 RepID=A0A7X2FWS2_9PROT)

HSP 1 Score: 75.5 bits (184), Expect = 5.010e-16
Identity = 34/44 (77.27%), Postives = 41/44 (93.18%), Query Frame = 1 
Query:    1 MASLDRTARAFLLTELVTGFALTLKYMFKPKVTVNYPHEKGPLS 132
            MA LDRTAR+FLLTE+V+G A+TL+YMFKP VT+NYP+EKGPLS
Sbjct:    1 MAFLDRTARSFLLTEIVSGMAITLRYMFKPSVTLNYPYEKGPLS 44
[Close]
BLAST of mRNA_P-wetherbeei_contig12187.1.1 vs. uniprot
Match: A0A1T4KWZ2_9HYPH (NADH-quinone oxidoreductase subunit I n=1 Tax=Enhydrobacter aerosaccus TaxID=225324 RepID=A0A1T4KWZ2_9HYPH)

HSP 1 Score: 74.7 bits (182), Expect = 1.000e-15
Identity = 34/44 (77.27%), Postives = 39/44 (88.64%), Query Frame = 1 
Query:    1 MASLDRTARAFLLTELVTGFALTLKYMFKPKVTVNYPHEKGPLS 132
            M SLDR AR FLL E+++GFALTLKYMFKPKVTVNYP+E+ PLS
Sbjct:    1 MPSLDRAARTFLLAEVISGFALTLKYMFKPKVTVNYPYERSPLS 44
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig12187.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A259MWH4_9PROT6.120e-2093.18NADH-quinone oxidoreductase subunit I n=11 Tax=Alp... [more]
A0A1H8XGF3_9PROT2.780e-1888.64NADH-quinone oxidoreductase subunit I n=2 Tax=uncl... [more]
A0A5C8PPP5_9HYPH5.560e-1886.36NADH-quinone oxidoreductase subunit I n=1 Tax=Vine... [more]
NUOI_MAGSA2.220e-1784.09NADH-quinone oxidoreductase subunit I n=17 Tax=Rho... [more]
A0A6N7AJV1_9PROT2.220e-1786.36NADH-quinone oxidoreductase subunit I n=1 Tax=Rhod... [more]
A0A199YGA0_9PROT1.260e-1679.55NADH-quinone oxidoreductase subunit I n=33 Tax=Alp... [more]
A0A1G6XNL8_9PROT1.780e-1681.82NADH-quinone oxidoreductase subunit I n=15 Tax=Alp... [more]
A0A537MZ06_9PROT2.510e-1677.27NADH-quinone oxidoreductase subunit I n=1 Tax=Alph... [more]
A0A7X2FWS2_9PROT5.010e-1677.27NADH-quinone oxidoreductase subunit I n=1 Tax=Alph... [more]
A0A1T4KWZ2_9HYPH1.000e-1577.27NADH-quinone oxidoreductase subunit I n=1 Tax=Enhy... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig12187contigP-wetherbeei_contig12187:13..144 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog1205680.CAKO01000010_gene3770
Preferred namenuoI
PFAMsFer4
Model size132
Max annot lvl204441|Rhodospirillales
KEGG rclassRC00061
KEGG koko:K00338
KEGG TC3.D.1
KEGG ReactionR11945
KEGG Pathwayko00190,ko01100,map00190,map01100
KEGG ModuleM00144
Hectar predicted targeting categorysignal peptide
Exons1
Evalue1.42e-20
EggNOG OGsCOG1143@1|root,COG1143@2|Bacteria,1MV90@1224|Proteobacteria,2TRFE@28211|Alphaproteobacteria,2JPHK@204441|Rhodospirillales
EC1.6.5.3
DescriptionNDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
Cds size132
COG categoryC
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185940.976894-CDS-P-wetherbeei_contig12187:12..1441683185940.976894-CDS-P-wetherbeei_contig12187:12..144Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig12187 13..144 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig12187.1.1prot_P-wetherbeei_contig12187.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig12187 13..144 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig12187.1.1

>prot_P-wetherbeei_contig12187.1.1 ID=prot_P-wetherbeei_contig12187.1.1|Name=mRNA_P-wetherbeei_contig12187.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=44bp
MASLDRTARAFLLTELVTGFALTLKYMFKPKVTVNYPHEKGPLS
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mRNA from alignment at P-wetherbeei_contig12187:13..144-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig12187.1.1 ID=mRNA_P-wetherbeei_contig12187.1.1|Name=mRNA_P-wetherbeei_contig12187.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=132bp|location=Sequence derived from alignment at P-wetherbeei_contig12187:13..144- (Phaeothamnion wetherbeei SAG_119_79)
ATGGCCTCTCTCGACCGTACCGCGCGCGCGTTCCTGCTGACCGAACTGGT
CACGGGCTTTGCGTTGACGCTGAAGTACATGTTCAAGCCCAAAGTGACGG
TGAATTATCCGCACGAGAAGGGACCGCTCAGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig12187:13..144-

>mRNA_P-wetherbeei_contig12187.1.1 ID=mRNA_P-wetherbeei_contig12187.1.1|Name=mRNA_P-wetherbeei_contig12187.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=132bp|location=Sequence derived from alignment at P-wetherbeei_contig12187:13..144- (Phaeothamnion wetherbeei SAG_119_79)
ATGGCCTCTCTCGACCGTACCGCGCGCGCGTTCCTGCTGACCGAACTGGT
CACGGGCTTTGCGTTGACGCTGAAGTACATGTTCAAGCCCAAAGTGACGG
TGAATTATCCGCACGAGAAGGGACCGCTCAGC
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