prot_P-wetherbeei_contig12165.1.1 (polypeptide) Phaeothamnion wetherbeei SAG_119_79

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-wetherbeei_contig12165.1.1
Unique Nameprot_P-wetherbeei_contig12165.1.1
Typepolypeptide
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Sequence length465
Homology
[Close]
BLAST of mRNA_P-wetherbeei_contig12165.1.1 vs. uniprot
Match: A0A6H5JH58_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH58_9PHAE)

HSP 1 Score: 62.0 bits (149), Expect = 2.090e-6
Identity = 67/225 (29.78%), Postives = 102/225 (45.33%), Query Frame = 0 
Query:   24 GYALRVHGRLGDPSPALLYRMESGEIAIIRSARDLEQGDALGPIFFSLGILAATRVFRASAAADGCALVGFLNDLVLATGLPDSAELSLALVAAVQRLRADPSRVGLTLNMTKSAALCSGDA----GARRFSPGTTIGLTAPGVPGAPVGIRFVGVPIGTEEFVRT-ATGIEEAGDIDRPIYALQYLPQALVASVITRSSLAPQANFEARASSPFLAADIFRHFD 243
            GY  R +  +  P+ A+ Y M+SGE   +     ++QGD +GP  FSL ++      +      G A   +++D+ L   L D  E S   V A+  L  + + VG+ +N  KS+AL           RR   G  +GLT  G      GI  VGVPIGT+ +VR  A  +   G  ++    L  +    VA++IT  SL  ++ +  R   P L  +     D
Sbjct:  707 GYIARCYDEI--PATAV-YEMDSGERRTLECTSGVQQGDGMGPPLFSLILIPIILKLQDKYKPLGVAFKAYMDDITL--HLKDLTEES---VQAMTDLVDELAEVGIVVNRAKSSALPPPGHMITDQQRRLLEG--VGLTVAGE-----GITVVGVPIGTDNYVREFAMKVITEGGAEKLARMLPLMSDRQVANLITSLSLIQRSAYIERGIDPTLTKEACERLD 916
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig12165.1.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JH58_9PHAE2.090e-629.78Reverse transcriptase domain-containing protein n=... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 282..324
IPR000477Reverse transcriptase domainPROSITEPS50878RT_POLcoord: 1..177
score: 9.490587

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig12165contigP-wetherbeei_contig12165:640..2034 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig12165.1.1mRNA_P-wetherbeei_contig12165.1.1Phaeothamnion wetherbeei SAG_119_79mRNAP-wetherbeei_contig12165 392..2034 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-wetherbeei_contig12165.1.1 ID=prot_P-wetherbeei_contig12165.1.1|Name=mRNA_P-wetherbeei_contig12165.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=465bp
MQNMRPLLPPSRPSPRSSSHRIGGYALRVHGRLGDPSPALLYRMESGEIA
IIRSARDLEQGDALGPIFFSLGILAATRVFRASAAADGCALVGFLNDLVL
ATGLPDSAELSLALVAAVQRLRADPSRVGLTLNMTKSAALCSGDAGARRF
SPGTTIGLTAPGVPGAPVGIRFVGVPIGTEEFVRTATGIEEAGDIDRPIY
ALQYLPQALVASVITRSSLAPQANFEARASSPFLAADIFRHFDAKIAYMA
TSLASLAPPEPLPGVDRDDVLCRHPGDGGDAYSGGGCGGSSDGSDDGSGG
GSSGSGEGDDDGAGRGGSGNDGGGGRGAVEAGAAAAGAAATAVAVAAVIV
GATAVAAETAVPAASCGRGICSCSLTSGLTRISLACRFQRHSSRPRGLDG
GGLLRPASHGGGVDYHGGPVGTSRPKVLGPVCGRQQPTRGRPKTWWVRCQ
SIGQPVLPNQWRRRL
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000477RT_dom