mRNA_P-wetherbeei_contig12160.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
|
Overview
Homology
BLAST of mRNA_P-wetherbeei_contig12160.2.1 vs. uniprot
Match: A0A1F3YHQ7_9PROT (Outer membrane protein assembly factor BamE n=1 Tax=Betaproteobacteria bacterium RBG_16_66_20 TaxID=1797479 RepID=A0A1F3YHQ7_9PROT) HSP 1 Score: 136 bits (342), Expect = 1.540e-37 Identity = 65/110 (59.09%), Postives = 82/110 (74.55%), Query Frame = 1
Query: 1 LVAAGMLSACSYLPSMXXXXXISAIKPYRIDIQQGNFLSQETVSQLKKGMTREQVRFVLGTPLVTDIFHPDRWDYVYYRELQDGKTDRRNISVFFEQDRLARVSGDVTPA 330
L +L AC + + + PYR+ IQQGNF+SQE V+QLK GMT+EQVRFVLGTPLVTDIFH DRWDYV++REL DGK ++RN++V FE+D+L RV GD+ PA
Sbjct: 15 LAGVALLPACKSVD----VPKVPGVTPYRMVIQQGNFISQEMVAQLKPGMTKEQVRFVLGTPLVTDIFHADRWDYVFFRELADGKREQRNLAVVFEKDKLVRVLGDLLPA 120
BLAST of mRNA_P-wetherbeei_contig12160.2.1 vs. uniprot
Match: A0A1F4F102_9PROT (Outer membrane protein assembly factor BamE n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_65_14 TaxID=1797501 RepID=A0A1F4F102_9PROT) HSP 1 Score: 131 bits (329), Expect = 7.270e-37 Identity = 60/93 (64.52%), Postives = 75/93 (80.65%), Query Frame = 1
Query: 64 ISAIKPYRIDIQQGNFLSQETVSQLKKGMTREQVRFVLGTPLVTDIFHPDRWDYVYYRELQDGKTDRRNISVFFEQDRLARVSGDVTPAAQGQ 342
I I PY+++IQQGNF+SQE VSQLK GM++EQVRFVLGTPL+TDIFH +RWDYVY+RE GK ++R ++VFF +LAR+ GDV PA GQ
Sbjct: 20 IPGITPYKMEIQQGNFVSQEMVSQLKPGMSKEQVRFVLGTPLITDIFHGERWDYVYWREDASGKREQRKLAVFFADGKLARLDGDVVPAKAGQ 112
BLAST of mRNA_P-wetherbeei_contig12160.2.1 vs. uniprot
Match: A0A536SKH9_9PROT (Outer membrane protein assembly factor BamE n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A536SKH9_9PROT) HSP 1 Score: 128 bits (322), Expect = 9.200e-36 Identity = 56/93 (60.22%), Postives = 76/93 (81.72%), Query Frame = 1
Query: 64 ISAIKPYRIDIQQGNFLSQETVSQLKKGMTREQVRFVLGTPLVTDIFHPDRWDYVYYRELQDGKTDRRNISVFFEQDRLARVSGDVTPAAQGQ 342
I I PY+ +IQQGN++SQE +SQ+K GMTREQVRF+LGTPL+TDIFH DRWDYVY+RE ++GK + R +++FF+ +LAR++GDV A G+
Sbjct: 23 IPGITPYQPEIQQGNYVSQEMISQVKPGMTREQVRFILGTPLLTDIFHADRWDYVYWREAENGKRESRRLALFFDDGKLARIAGDVASPATGR 115
BLAST of mRNA_P-wetherbeei_contig12160.2.1 vs. uniprot
Match: A0A521YUQ2_9PROT (Outer membrane protein assembly factor BamE n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A521YUQ2_9PROT) HSP 1 Score: 127 bits (319), Expect = 2.870e-35 Identity = 58/93 (62.37%), Postives = 74/93 (79.57%), Query Frame = 1
Query: 64 ISAIKPYRIDIQQGNFLSQETVSQLKKGMTREQVRFVLGTPLVTDIFHPDRWDYVYYRELQDGKTDRRNISVFFEQDRLARVSGDVTPAAQGQ 342
I I PY+++IQQGNF+SQE VS+LK GMT+EQVRFVLGTPL+TDIFH +RWDYVY+ E Q G ++R ++VFF+ +LAR+ GDV PA Q
Sbjct: 26 IPGITPYKMEIQQGNFVSQEMVSKLKPGMTKEQVRFVLGTPLITDIFHGNRWDYVYWHEDQAGNREQRKLAVFFDNGKLARLDGDVVPAKAAQ 118
BLAST of mRNA_P-wetherbeei_contig12160.2.1 vs. uniprot
Match: A0A1F3XAS7_9PROT (Outer membrane protein assembly factor BamE n=1 Tax=Betaproteobacteria bacterium RBG_16_64_9 TaxID=1797478 RepID=A0A1F3XAS7_9PROT) HSP 1 Score: 126 bits (317), Expect = 7.790e-35 Identity = 68/126 (53.97%), Postives = 86/126 (68.25%), Query Frame = 1
Query: 22 SACSYLPSMXXXXXISAIKPYRIDIQQGNFLSQETVSQLKKGMTREQVRFVLGTPLVTDIFHPDRWDYVYYRELQDGK-TDRRNISVFFEQDRLARVSGDVTPAAQGQKDAPVPKPATSAPDAPKA 396
+ACSY+P++ P+RI+IQQGNF+SQE V QLK GMTR+QVRF +GTPLV D+FH DRWDYV+ R+ + + ++R ISVFFEQD+LAR+ GDV A P ATS P AP A
Sbjct: 14 AACSYIPNL---------SPHRIEIQQGNFVSQEMVGQLKVGMTRDQVRFAMGTPLVADLFHGDRWDYVFVRQRANSREVEQRRISVFFEQDKLARIEGDVVGAR--------PTSATSTPAAPAA 122
BLAST of mRNA_P-wetherbeei_contig12160.2.1 vs. uniprot
Match: A0A7V8BZD2_9RHOO (Outer membrane protein assembly factor BamE n=1 Tax=Rhodocyclaceae bacterium TaxID=1898103 RepID=A0A7V8BZD2_9RHOO) HSP 1 Score: 127 bits (319), Expect = 1.220e-34 Identity = 63/111 (56.76%), Postives = 81/111 (72.97%), Query Frame = 1
Query: 19 LSACSYLPSMXXXXXISAIKPYRIDIQQGNFLSQETVSQLKKGMTREQVRFVLGTPLVTDIFHPDRWDYVYYRELQDGKTDRRNISVFFEQDRLARVSGDVTPAAQGQKDA 351
L+ACS +M SA+ PYRIDI+QGN+++QE V+QLK GMTR+QVRF+LGTPLV DIFH DRWDY+Y + G+ R +VFFE +RLARV+GDV A G+ +A
Sbjct: 13 LAACS---NMQMPDVASAVTPYRIDIRQGNYVTQEMVAQLKPGMTRDQVRFILGTPLVADIFHADRWDYIYSFKPGRGELQLRRFAVFFEDNRLARVAGDVVGAEPGETEA 120
BLAST of mRNA_P-wetherbeei_contig12160.2.1 vs. uniprot
Match: A0A7Y8JD77_9RHOO (Outer membrane protein assembly factor BamE n=1 Tax=Rhodocyclaceae bacterium TaxID=1898103 RepID=A0A7Y8JD77_9RHOO) HSP 1 Score: 125 bits (314), Expect = 3.460e-34 Identity = 62/113 (54.87%), Postives = 81/113 (71.68%), Query Frame = 1
Query: 1 LVAAGMLSACSYLPSMXXXXXISAIKPYRIDIQQGNFLSQETVSQLKKGMTREQVRFVLGTPLVTDIFHPDRWDYVYYRELQDGKTDRRNISVFFEQDRLARVSGDVTPAAQG 339
LVAA L+ACS P + S + PYRID++QGN+++QE V++LK GMTR+QVRF LGTPL+TD+FH +RWDYVY + G+ R +SVFFE D+L RV GDV A +G
Sbjct: 13 LVAA--LAACSSAPDIT-----SRLSPYRIDVRQGNYVTQEMVAKLKPGMTRDQVRFALGTPLITDLFHANRWDYVYRFQPGHGEAQERRLSVFFEDDKLVRVGGDVVAAGEG 118
BLAST of mRNA_P-wetherbeei_contig12160.2.1 vs. uniprot
Match: A0A1F4DQR4_9PROT (Outer membrane protein assembly factor BamE n=2 Tax=unclassified Betaproteobacteria TaxID=33809 RepID=A0A1F4DQR4_9PROT) HSP 1 Score: 125 bits (315), Expect = 5.050e-34 Identity = 60/103 (58.25%), Postives = 76/103 (73.79%), Query Frame = 1
Query: 25 ACSYLPSMXXXXXISAIKPYRIDIQQGNFLSQETVSQLKKGMTREQVRFVLGTPLVTDIFHPDRWDYVYYRELQDGK-TDRRNISVFFEQDRLARVSGDVTPA 330
AC +LP++ P+RI+IQQGNF+SQE V+QLK GMT++QVRF +GTPLV D+FH DRWDYV+ R D + T+RR ISV+FEQDRL R+ GDV A
Sbjct: 52 ACGHLPNL---------SPHRIEIQQGNFISQEMVAQLKSGMTKDQVRFAMGTPLVVDVFHGDRWDYVFVRRRADSRDTERRRISVYFEQDRLTRIEGDVVAA 145
BLAST of mRNA_P-wetherbeei_contig12160.2.1 vs. uniprot
Match: A0A536X8L5_9PROT (Outer membrane protein assembly factor BamE n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A536X8L5_9PROT) HSP 1 Score: 124 bits (310), Expect = 5.920e-34 Identity = 52/93 (55.91%), Postives = 75/93 (80.65%), Query Frame = 1
Query: 64 ISAIKPYRIDIQQGNFLSQETVSQLKKGMTREQVRFVLGTPLVTDIFHPDRWDYVYYRELQDGKTDRRNISVFFEQDRLARVSGDVTPAAQGQ 342
I I PY+ +IQQGN++S E ++Q+K GMTREQVRF+LGTPL+TDIFH DRWDY+Y+RE ++GK + R +++FF++ +LAR+ GD+ A G+
Sbjct: 22 IPGITPYKPEIQQGNYVSPELIAQVKPGMTREQVRFLLGTPLLTDIFHADRWDYIYWREAENGKRESRRVALFFDEGKLARIVGDIASPAAGR 114
BLAST of mRNA_P-wetherbeei_contig12160.2.1 vs. uniprot
Match: A0A6C1B781_9RHOO (Outer membrane protein assembly factor BamE n=1 Tax=Nitrogeniibacter mangrovi TaxID=2016596 RepID=A0A6C1B781_9RHOO) HSP 1 Score: 125 bits (313), Expect = 6.030e-34 Identity = 57/104 (54.81%), Postives = 81/104 (77.88%), Query Frame = 1
Query: 19 LSACSYLPSMXXXXXISAIKPYRIDIQQGNFLSQETVSQLKKGMTREQVRFVLGTPLVTDIFHPDRWDYVYYRELQDGKTDRRNISVFFEQDRLARVSGDVTPA 330
L A + L ++ ++PYR+DI+QGNF++Q+ +SQLKKGM+REQVRF LGTPL+TD+FH DRWDYVY + G+T++R ++++FE D+LARV+GDVT A
Sbjct: 9 LIAAAVLLTVAGCGVTEKLRPYRLDIRQGNFVTQDMISQLKKGMSREQVRFALGTPLLTDVFHADRWDYVYRFKPGYGETEQRIVTLYFENDKLARVAGDVTAA 112 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig12160.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig12160.2.1 >prot_P-wetherbeei_contig12160.2.1 ID=prot_P-wetherbeei_contig12160.2.1|Name=mRNA_P-wetherbeei_contig12160.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=139bp MLSACSYLPSMPSMPSISAIKPYRIDIQQGNFLSQETVSQLKKGMTREQVback to top mRNA from alignment at P-wetherbeei_contig12160:1004..1435- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig12160.2.1 ID=mRNA_P-wetherbeei_contig12160.2.1|Name=mRNA_P-wetherbeei_contig12160.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=432bp|location=Sequence derived from alignment at P-wetherbeei_contig12160:1004..1435- (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig12160:1004..1435- >mRNA_P-wetherbeei_contig12160.2.1 ID=mRNA_P-wetherbeei_contig12160.2.1|Name=mRNA_P-wetherbeei_contig12160.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=417bp|location=Sequence derived from alignment at P-wetherbeei_contig12160:1004..1435- (Phaeothamnion wetherbeei SAG_119_79)back to top |