mRNA_P-wetherbeei_contig12156.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
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Overview
Homology
BLAST of mRNA_P-wetherbeei_contig12156.2.1 vs. uniprot
Match: D7FP98_ECTSI (Flagellar radial spoke protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FP98_ECTSI) HSP 1 Score: 99.8 bits (247), Expect = 3.770e-21 Identity = 86/192 (44.79%), Postives = 109/192 (56.77%), Query Frame = 1
Query: 1 LDMSAFLVESEHRAARPAVREACSQSDAFKPRPPSPPFQPRCTGTDA--EAQVGDDLFDFDAEIEPLLDVLVSKTLEQAHVEAEREGEMAALVAVSAAAAAARCEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKAGSQQLARQLWPSVLEGACSALRAGDAWVEPAARQIEAVFWPWLMDRV 570
LD+S +LVE AARP REA +Q+D F+ RP +P F P+ TG DA + +V D LFDF+AE++P+L VLV KTLEQA +E ERE E+ + + A R EE XXXXXXXXXXXXX K QL RQ+ P L+ A L A +W + +QI+ VF PWL RV
Sbjct: 117 LDLSRYLVEPGDTAARPE-READTQTDDFQERPQTPDFVPKKTGVDAWTQIEVSDKLFDFEAEVQPMLAVLVGKTLEQARMEVEREHELLCIREAATALVHQRAEEVQQVLELKQAAVEAEKXXXXXXXXXXXXXNRRRLAKEKVACLQLVRQVLPLSLDRAFEQLSA-KSWETQSVQQIKKVFLPWLFGRV 306
BLAST of mRNA_P-wetherbeei_contig12156.2.1 vs. uniprot
Match: F0Y5T0_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y5T0_AURAN) HSP 1 Score: 90.1 bits (222), Expect = 6.030e-18 Identity = 68/191 (35.60%), Postives = 92/191 (48.17%), Query Frame = 1
Query: 1 LDMSAFLVESEHRAARPAVREACSQSDAFKPRPPSPPFQPRCTGTDAEAQVGDDL-FDFDAEIEPLLDVLVSKTLEQAHVEAEREGEMAALVAVSAAAAAARCEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKAGSQQLARQLWPSVLEGACSALRAGDAWVEPAARQIEAVFWPWLMDRV 570
LD++ +LVE E+ ++ AV EA +Q+D F +PP PF P TG DA + DD F F+ E++PLL VLVSKTLEQA +E E+E E+AA+ + A + E K S +L QL P + EGA +WVEP +I+A PWL RV
Sbjct: 110 LDLTPYLVEKEYASS--AVEEA-AQTDGFLEQPPPAPFAPPKTGVDASTSMEDDQPFVFNNEVQPLLAVLVSKTLEQAMLEVEQEEELAAIADDMSDKLARQAAEKARVEAMEQAEVDREKAKLGDFESARAALVEEQTLARKVASSRLVDQLLPEIFEGAYRHFEDRGSWVEPVLHEIKATTLPWLYARV 297
BLAST of mRNA_P-wetherbeei_contig12156.2.1 vs. uniprot
Match: A0A835YQI5_9STRA (Radial spoke protein 3-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQI5_9STRA) HSP 1 Score: 87.0 bits (214), Expect = 1.250e-16 Identity = 82/208 (39.42%), Postives = 103/208 (49.52%), Query Frame = 1
Query: 1 LDMSAFLVESE-----------HRAARPA------VREACSQSDAFKPRPPSPPFQPRCTGTDAEAQV-GDDLFDFDAEIEPLLDVLVSKTLEQAHVEAEREGEMAALVAVSAAAAAARCEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKAGSQQLARQLWPSVLEGACSALRAGDAWVEPAARQIEAVFWPWLMDRV 570
LD+S +LV E +R PA ++ +Q+D F +P ++ G DA +V +LFDFD EI+PLLDVL+ KTLEQA +E ER E+ + + A R E XXXXXXXXXXXXXX K + + RQ WP VL GAC ALRA W EP A I F PWL+D V
Sbjct: 115 LDLSKYLVAPEPQIEDDASERINRQRAPASMPFYGFSDSVTQTDEFAEKPDEVYYKQPLGGADAATEVINTELFDFDREIKPLLDVLIGKTLEQAKLEVERSWELQQIAQATDRFNAERVAEARAQEQLEAAAIERXXXXXXXXXXXXXXALSRWQATQKVAAVCMMRQCWPGVLRGACEALRAAGRWCEPRAIDIADEFMPWLLDSV 322
BLAST of mRNA_P-wetherbeei_contig12156.2.1 vs. uniprot
Match: A0A8B9GLA9_9PSIT (Radial spoke head 3 n=1 Tax=Amazona collaria TaxID=241587 RepID=A0A8B9GLA9_9PSIT) HSP 1 Score: 78.2 bits (191), Expect = 7.030e-14 Identity = 68/166 (40.96%), Postives = 86/166 (51.81%), Query Frame = 1
Query: 73 QSDAFKPRPPSPPFQPRCTGTDAEAQVGDDLFDFDAEIEPLLDVLVSKTLEQAHVEAEREGEMAALVAVSAAAAAARCEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKAGSQQLARQLWPSVLEGACSALRAGDAWVEPAARQIEAVFWPWLMDRV 570
Q+DAF RPPSP F P TG D Q+ +LFDFD E++P+L+VL+ KT+EQA +E E E+A L A A A R E XXXXXXXXXXXX K +Q A+ ++ + LR G + +P R IE F PWLM V
Sbjct: 38 QTDAFLDRPPSPFFIPAKTGKDVATQLAGELFDFDIEVKPILEVLIGKTVEQALLEVMEEEELAQLWAHQRAYAELRNAELAEVQRLEEQDRRYXXXXXXXXXXXXQMLKKQKETAEKIAAQAFAKHYLADLIPSVFNNLREGGFFYDPIERDIETEFLPWLMTEV 203
BLAST of mRNA_P-wetherbeei_contig12156.2.1 vs. uniprot
Match: UPI001F5EBF31 (radial spoke head protein 3 homolog n=1 Tax=Schistocerca piceifrons TaxID=274613 RepID=UPI001F5EBF31) HSP 1 Score: 78.6 bits (192), Expect = 9.290e-14 Identity = 42/76 (55.26%), Postives = 53/76 (69.74%), Query Frame = 1
Query: 46 RPAVREACSQSDAFKPRPPSPPFQPRCTGTDAEAQV-GDDLFDFDAEIEPLLDVLVSKTLEQAHVEAEREGEMAAL 270
RP +AC Q+D F RPP+PP+ P TG D E Q+ DLFDFD E+EP+L+VLV KT+EQA +E E EMAA+
Sbjct: 128 RPLEEDACCQTDLFLDRPPTPPYVPAKTGLDQETQIYPGDLFDFDLEVEPILEVLVGKTIEQAMIEVLSEEEMAAM 203
BLAST of mRNA_P-wetherbeei_contig12156.2.1 vs. uniprot
Match: A0A672UCZ0_STRHB (Radial spoke head 3 n=6 Tax=Psittaciformes TaxID=9223 RepID=A0A672UCZ0_STRHB) HSP 1 Score: 78.6 bits (192), Expect = 1.130e-13 Identity = 68/166 (40.96%), Postives = 86/166 (51.81%), Query Frame = 1
Query: 73 QSDAFKPRPPSPPFQPRCTGTDAEAQVGDDLFDFDAEIEPLLDVLVSKTLEQAHVEAEREGEMAALVAVSAAAAAARCEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKAGSQQLARQLWPSVLEGACSALRAGDAWVEPAARQIEAVFWPWLMDRV 570
Q+DAF RPPSP F P TG D Q+ +LFDFD E++P+L+VL+ KT+EQA +E E E+A L A A A R E XXXXXXXXXXXX K +Q A+ ++ + LR G + +P R IE F PWLM V
Sbjct: 171 QTDAFLDRPPSPFFVPAKTGKDVATQLAGELFDFDIEVKPILEVLIGKTVEQALLEVMEEEELAQLWAHQRAYAELRNAELAEVQRLEEQDRRYXXXXXXXXXXXXQMLKKQKETAEKIAAQAFAKHYLADLIPSVFNNLREGGFFYDPIERDIETEFLPWLMTEV 336
BLAST of mRNA_P-wetherbeei_contig12156.2.1 vs. uniprot
Match: UPI001F5023D2 (radial spoke head protein 3 homolog n=1 Tax=Schistocerca americana TaxID=7009 RepID=UPI001F5023D2) HSP 1 Score: 78.6 bits (192), Expect = 1.340e-13 Identity = 42/76 (55.26%), Postives = 53/76 (69.74%), Query Frame = 1
Query: 46 RPAVREACSQSDAFKPRPPSPPFQPRCTGTDAEAQV-GDDLFDFDAEIEPLLDVLVSKTLEQAHVEAEREGEMAAL 270
RP +AC Q+D F RPP+PP+ P TG D E Q+ DLFDFD E+EP+L+VLV KT+EQA +E E EMAA+
Sbjct: 421 RPLEEDACCQTDLFLDRPPTPPYVPAKTGLDQETQIYPGDLFDFDLEVEPILEVLVGKTIEQAMIEVLSEEEMAAM 496
BLAST of mRNA_P-wetherbeei_contig12156.2.1 vs. uniprot
Match: A0A8C5PNK0_9ANUR (Radial spoke head 3 n=1 Tax=Leptobrachium leishanense TaxID=445787 RepID=A0A8C5PNK0_9ANUR) HSP 1 Score: 77.4 bits (189), Expect = 2.010e-13 Identity = 85/167 (50.90%), Postives = 106/167 (63.47%), Query Frame = 1
Query: 73 QSDAFKPRPPSPPFQPRCTGTDAEAQVGD-DLFDFDAEIEPLLDVLVSKTLEQAHVEAEREGEMAALVAVSAAAAAARCEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKAGSQQLARQLWPSVLEGACSALRAGDAWVEPAARQIEAVFWPWLMDRV 570
Q+DAF RPP+P F P TG D Q+ D +LFDFD E++P+L+VLV KT+EQA +E E E+AAL A R E XXXXXXXXXXXXXXXXXXXXXXXXXXXXX K ++ A+Q ++ S+LR + +P R +E VF PWLM+ V
Sbjct: 133 QTDAFLDRPPTPLFIPAKTGVDIATQILDGELFDFDLEVKPMLEVLVGKTIEQALLEVMEEEELAALREQQRAFEELRDAELAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEKETAEKVAARAFAQQYLADLVPSVFSSLRDNGYFYDPVERDVETVFMPWLMEEV 299
BLAST of mRNA_P-wetherbeei_contig12156.2.1 vs. uniprot
Match: A0A8C6J1W9_MELUD (Radial spoke head 3 n=2 Tax=Melopsittacus undulatus TaxID=13146 RepID=A0A8C6J1W9_MELUD) HSP 1 Score: 77.0 bits (188), Expect = 3.700e-13 Identity = 70/166 (42.17%), Postives = 87/166 (52.41%), Query Frame = 1
Query: 73 QSDAFKPRPPSPPFQPRCTGTDAEAQVGDDLFDFDAEIEPLLDVLVSKTLEQAHVEAEREGEMAALVAVSAAAAAARCEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKAGSQQLARQLWPSVLEGACSALRAGDAWVEPAARQIEAVFWPWLMDRV 570
Q+DAF RPPSP F P TG D Q+ +LFDFD E++P+L+VLV KT+EQA +E E E+A L A A A R E XXXXXXXXXXXXXX K +Q + ++ + LR G + +P R IE F PWLM V
Sbjct: 136 QTDAFLDRPPSPFFIPAKTGKDVATQLAGELFDFDIEVKPILEVLVGKTVEQALLEVMEEEELAQLWAHQRAYAELRNAELAEVQRLEEEDRXXXXXXXXXXXXXXQMLKKQKETAEKIAAQAFTKHYLADLIPSVFNNLREGGFFYDPIERDIETEFLPWLMTEV 301
BLAST of mRNA_P-wetherbeei_contig12156.2.1 vs. uniprot
Match: A0A3B3BE54_ORYME (Radial spoke head 3 n=1 Tax=Oryzias melastigma TaxID=30732 RepID=A0A3B3BE54_ORYME) HSP 1 Score: 75.9 bits (185), Expect = 4.780e-13 Identity = 67/175 (38.29%), Postives = 91/175 (52.00%), Query Frame = 1
Query: 49 PAVREACSQSDAFKPRPPSPPFQPRCTGTDAEAQVGD-DLFDFDAEIEPLLDVLVSKTLEQAHVEAEREGEMAALVAVSAAAAAARCEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKAGSQQLARQLWPSVLEGACSALRAGDAWVEPAARQIEAVFWPWLMDRV 570
P V+E Q+DAF RP +P F P TG DAE Q+ + DLFDF+ E+ P+L++LV KTLEQ+ +E E E+AAL+A A R + XXXXXXX +A +QQ L PSVL ++LR + +P R +E F+P LM+ V
Sbjct: 104 PVVKEIECQTDAFLDRPETPIFIPAKTGKDAETQIDEGDLFDFEEEVRPILEILVGKTLEQSLLEVMEEEELAALMAQQRAFLERRNNQLPEVHRLQEQEXXXXXXXVKQKRALQEEKEVAEKIAARALTQQQLADLVPSVL----ASLRREGYFYDPVERDVETHFFPRLMEDV 274 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig12156.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig12156.2.1 >prot_P-wetherbeei_contig12156.2.1 ID=prot_P-wetherbeei_contig12156.2.1|Name=mRNA_P-wetherbeei_contig12156.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=188bp MSAFLVESEHRAARPAVREACSQSDAFKPRPPSPPFQPRCTGTDAEAQVGback to top mRNA from alignment at P-wetherbeei_contig12156:1390..1959- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig12156.2.1 ID=mRNA_P-wetherbeei_contig12156.2.1|Name=mRNA_P-wetherbeei_contig12156.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=570bp|location=Sequence derived from alignment at P-wetherbeei_contig12156:1390..1959- (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig12156:1390..1959- >mRNA_P-wetherbeei_contig12156.2.1 ID=mRNA_P-wetherbeei_contig12156.2.1|Name=mRNA_P-wetherbeei_contig12156.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=564bp|location=Sequence derived from alignment at P-wetherbeei_contig12156:1390..1959- (Phaeothamnion wetherbeei SAG_119_79)back to top |