|
Homology
BLAST of mRNA_P-wetherbeei_contig1214.3.1 vs. uniprot
Match: D7FGR9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGR9_ECTSI) HSP 1 Score: 224 bits (571), Expect = 5.750e-64 Identity = 153/417 (36.69%), Postives = 203/417 (48.68%), Query Frame = 1
Query: 199 PLLVSFRGRPVPSDGSEIRFKLHE--HTKNEGKRILTGKTDRLEFWAKNTGVG---RDLANFCVGVLDDVTGEMTLHEVGHVYGLQQKVRGVDDVVEDRATAMEDLAYKERRGILIDAFGSKKSKAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAMIDAGAEAEEAGRRRLLPPYHADAGTPAGVYLVEEMVRREDLAALGREADRLATAHPQGEGHWLRSWVQNRSRAAAGDKNKKKFSRHALSRLWTDAGAPPRERMLPLLHLNCMVAFHQASSFSKTTPAAVAKELSIPEVVARGLLAGFTLCGDDAGDGGGGGRRTFARDKFTRERLCVHALCLALVLEGCTLDFGALAADLALTPAAAAALLRQLGCAVTTGMPPKARLTVPLAFPRRRGA 1434
P+LVSF + VP D S + F++HE + EG++I+ G R+++W N G G DL F VGV D TGE+ LHE GH Y L+Q V DD +ED AME L YK+R+ L++ FGSKK KA A+ A EEA RRR LP +A TP GVY ++ ++L ++ RE DR A G W + + + + F L+ L + RML LL+L M FH AS+ K TPA ++ +L IPE+V R LL F++C G GG + R K + +L VHALCLALVLEGC L+ G LA D L+ A A ++LR+LGC T A L +PL FPR R A
Sbjct: 59 PILVSFANQTVPGDMSAVEFRMHEADDEEREGQKIVMGDGGRMDYWGLNFGPGAESNDLCRFLVGVEDGATGELILHEAGHAYSLRQSVGDKDDNIED--FAMEGLEYKQRKDALVNQFGSKKKKAAIRSRDANVIQAGSVVGGSAMSRVLGRALKEEEGGGAGGVDGDPTATDGAL----AAVEEA-RRRFLPKMRTEASTPEGVYSAGDIAGVQELESMEREIDRAAEQIEGGMHQWAKDFAERPRESCP------HFVGKRLTLLLDLGERNQKRRMLELLYLRHMCVFHHASALLKGTPAQLSAKLDIPEIVLRRLLEKFSVCEKK----GAGGTANYVRTKTLKNQLVVHALCLALVLEGCRLEIGVLAEDFRLSTAEARSMLRELGCTATNT---SAHLKLPLTFPRSRKA 455
BLAST of mRNA_P-wetherbeei_contig1214.3.1 vs. uniprot
Match: A0A507DSJ5_9FUNG (Uncharacterized protein n=1 Tax=Powellomyces hirtus TaxID=109895 RepID=A0A507DSJ5_9FUNG) HSP 1 Score: 65.5 bits (158), Expect = 9.230e-8 Identity = 100/437 (22.88%), Postives = 163/437 (37.30%), Query Frame = 1
Query: 181 DAAVGPPLLVSFRGRPVPSDGSEIRFKLHEHTKNEG--------KRILTGKTDRLEFWAKNTGVGRDLANFCVGVLDDVTGEMTLHEVGHVYGLQQKVRGVDDVVEDRATAMEDLAYKERRGILIDAFGSKKSKAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAMIDAGAEAEEAGRR-RLLPPYHADAGTPAGVYLVEEMVRREDLAALG-------READRLATAHPQGEGHWLRSWVQNRSRAAAGDKNKKKFSRHALSRLWTDAGAPPRERMLPLLHLNCMVAFHQASSFSKTTPAAVAKELSIPEVVARGLLAGFTLCGDDAGDGGGGGRRTFARDKFTRERLCVHALCLALVLEGCTLDFGALAADLALTPAAAAALLRQLGCAVTTGMPP------KARLTVPLAFPRR 1425
D + PLLVSF PS ++F+ + EG +RI+ G+ +LE+ NT + + VG+ D T ++TL E ++ L V+ + +A R L +AFG+KK + A + AE +E + R +PPY+A A TPA VY E+++ ++AA+ R A+ + T Q L SWV + HA R D + LL+L ++ F+ + + P++VA L+ FT +D G R+ F +++L + L +AL + LD +++D+ + + R+LGC V + K L VPL FP R
Sbjct: 22 DTSADTPLLVSFPD--FPSKPHSVKFQTFTKRQAEGASTSARKKRRIVVGQNSKLEYVGSNTD-SKSYCRYVVGIFDKNTKKLTLRET-ELFHLTTAVKTLKRHESKHIGEKNMIA----RNALGEAFGTKKRRQAIRALEKNQVDVGGLNEVADVIKGAIDEKA-------------------AALPTRAEIQEEQKLDRGIPPYNAQAQTPAEVYAREDLISDAEMAAIQFKKLWKIRGAEDVKT---QLAPMSLTSWVWGKI--------------HACLRSKDDVS-----QFKTLLYLGYLMKFYTLKDRDLNSGKVAERLGGAPQIVADTLMDRFTEFQEDDG------RKKFRMAPKLKDKLLAYILAIALTVNEYRLDINHMSSDMNIGVTKMTKVARELGCRVDSKRDEDGPQRKKVVLVVPLTFPTR 403
BLAST of mRNA_P-wetherbeei_contig1214.3.1 vs. uniprot
Match: A0A2R5FZC8_9STRA (DNA-directed RNA polymerase I subunit RPA49 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5FZC8_9STRA) HSP 1 Score: 65.1 bits (157), Expect = 2.070e-7 Identity = 73/257 (28.40%), Postives = 114/257 (44.36%), Query Frame = 1
Query: 724 GAEAEEAGRRRLLPPYHADAGTPAGVYLVEEMVRREDLAALGREADRLATAHPQGE-----------GHWLRSWVQNRSRAAAGDKNKKKFSRHALSRLWTDAGAPPRERMLPLLHLNCMVAFHQASSFSKTTPAAVAKELSIPEVVARGLLAGFTLCGDDAGDGGGGGRRTFARDKFTRERLCVHALCLALVLEGCTLDFGA---LAADLALTPAAAAALLRQLGCAVTT----GMPP--KAR---LTVPLAFPRR 1425
G +A+ A R+ LLPP+HA+A P V+L+++MV + +L AL + + L A + G ++RS ++ R +AG NKK A + L+ + ++ L+ ++ A P V+ +L+ F G + R K ++RL +H L LAL+L GC +D+ LA DL+ TP+ QLG T +P KAR L VPL FPR+
Sbjct: 490 GEDADAASRKHLLPPFHAEAERPEQVFLLQDMVSKNELRALKKPVEELVKAAQRAGSSAEFAAQDRFGTFVRSHLE---RISAGGMNKKAQKAVACAALYM-------QYLINFSKLHRIIRPRLQQKLGSVLGGA-------PYEVSGAILSTFAEPEIATG--------SMNRTKLHQDRLSLHILALALILCGCVIDYRRVKMLAEDLSQTPSWVFEYAAQLGTRTKTDSSASLPDGKKARKIVLEVPLRFPRK 721
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Stop | 1 |
Start | 1 |
Seed ortholog | 2880.D7FGR9 |
Preferred name | POLR1E |
PFAMs | RNA_pol_I_A49 |
Model size | 1535 |
Max annot lvl | 2759|Eukaryota |
KEGG rclass | RC02795 |
KEGG ko | ko:K03005 |
KEGG Reaction | R00435,R00441,R00442,R00443 |
KEGG Pathway | ko00230,ko00240,ko01100,ko03020,map00230,map00240,map01100,map03020 |
KEGG Module | M00182 |
Hectar predicted targeting category | other localisation |
GOs | GO:0000428,GO:0001179,GO:0001188,GO:0001650,GO:0003674,GO:0003824,GO:0003899,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005736,GO:0006139,GO:0006351,GO:0006352,GO:0006353,GO:0006354,GO:0006360,GO:0006361,GO:0006362,GO:0006363,GO:0006725,GO:0006807,GO:0008134,GO:0008150,GO:0008152,GO:0008361,GO:0009058,GO:0009059,GO:0009303,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010604,GO:0010628,GO:0016043,GO:0016070,GO:0016072,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019222,GO:0019438,GO:0022607,GO:0030880,GO:0031974,GO:0031981,GO:0032535,GO:0032774,GO:0032991,GO:0034062,GO:0034622,GO:0034641,GO:0034645,GO:0034654,GO:0034660,GO:0040029,GO:0042790,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044452,GO:0044464,GO:0045815,GO:0046483,GO:0048518,GO:0050789,GO:0055029,GO:0060255,GO:0061695,GO:0065003,GO:0065004,GO:0065007,GO:0065008,GO:0070013,GO:0070897,GO:0071704,GO:0071824,GO:0071840,GO:0090066,GO:0090304,GO:0097659,GO:0097747,GO:0098781,GO:0140098,GO:1901360,GO:1901362,GO:1901576,GO:1902494,GO:1990234 |
Exons | 4 |
Evalue | 1.35e-65 |
EggNOG OGs | KOG4183@1|root,KOG4183@2759|Eukaryota |
Ec32 ortholog description | RNA polymerase I associated factor, A49-like |
Ec32 ortholog | Ec-04_001110.1 |
Description | transcription by RNA polymerase I |
Cds size | 1425 |
COG category | K |
BRITE | br01611,ko00000,ko00001,ko00002,ko03021 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1683185938.9368913-UTR-P-wetherbeei_contig1214:1680..1710 | 1683185938.9368913-UTR-P-wetherbeei_contig1214:1680..1710 | Phaeothamnion wetherbeei SAG_119_79 | UTR | P-wetherbeei_contig1214 1681..1710 + |
1683185938.974869-UTR-P-wetherbeei_contig1214:4245..4325 | 1683185938.974869-UTR-P-wetherbeei_contig1214:4245..4325 | Phaeothamnion wetherbeei SAG_119_79 | UTR | P-wetherbeei_contig1214 4246..4325 + |
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1683185938.9460354-CDS-P-wetherbeei_contig1214:1710..2254 | 1683185938.9460354-CDS-P-wetherbeei_contig1214:1710..2254 | Phaeothamnion wetherbeei SAG_119_79 | CDS | P-wetherbeei_contig1214 1711..2254 + |
1683185938.953301-CDS-P-wetherbeei_contig1214:2468..2776 | 1683185938.953301-CDS-P-wetherbeei_contig1214:2468..2776 | Phaeothamnion wetherbeei SAG_119_79 | CDS | P-wetherbeei_contig1214 2469..2776 + |
1683185938.9605067-CDS-P-wetherbeei_contig1214:3260..3485 | 1683185938.9605067-CDS-P-wetherbeei_contig1214:3260..3485 | Phaeothamnion wetherbeei SAG_119_79 | CDS | P-wetherbeei_contig1214 3261..3485 + |
1683185938.967555-CDS-P-wetherbeei_contig1214:3897..4245 | 1683185938.967555-CDS-P-wetherbeei_contig1214:3897..4245 | Phaeothamnion wetherbeei SAG_119_79 | CDS | P-wetherbeei_contig1214 3898..4245 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig1214.3.1 >prot_P-wetherbeei_contig1214.3.1 ID=prot_P-wetherbeei_contig1214.3.1|Name=mRNA_P-wetherbeei_contig1214.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=475bp
MELEGPTSASPTPAPQDAAPKHPAGDGGGEKRSSKKRARSTVRVRVPPPG DAAVGPPLLVSFRGRPVPSDGSEIRFKLHEHTKNEGKRILTGKTDRLEFW AKNTGVGRDLANFCVGVLDDVTGEMTLHEVGHVYGLQQKVRGVDDVVEDR ATAMEDLAYKERRGILIDAFGSKKSKAAAAVAASNIIDAEHVVGGAAALG TVLSSSGDGGGASSGGTPSGTGAAASAMIDAGAEAEEAGRRRLLPPYHAD AGTPAGVYLVEEMVRREDLAALGREADRLATAHPQGEGHWLRSWVQNRSR AAAGDKNKKKFSRHALSRLWTDAGAPPRERMLPLLHLNCMVAFHQASSFS KTTPAAVAKELSIPEVVARGLLAGFTLCGDDAGDGGGGGRRTFARDKFTR ERLCVHALCLALVLEGCTLDFGALAADLALTPAAAAALLRQLGCAVTTGM PPKARLTVPLAFPRRRGAGGDARK* back to topmRNA from alignment at P-wetherbeei_contig1214:1681..4325+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_P-wetherbeei_contig1214.3.1 ID=mRNA_P-wetherbeei_contig1214.3.1|Name=mRNA_P-wetherbeei_contig1214.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2645bp|location=Sequence derived from alignment at P-wetherbeei_contig1214:1681..4325+ (Phaeothamnion wetherbeei SAG_119_79) CAGAATCGTTCTGTAGGACGAGGAAAACCCATGGAGCTCGAGGGACCAAC
GAGCGCTTCTCCCACGCCTGCTCCTCAGGATGCCGCCCCCAAGCATCCCG
CCGGCGACGGTGGTGGCGAGAAGAGGAGCAGCAAGAAGCGAGCAAGATCG
ACGGTCCGGGTGCGCGTCCCTCCGCCCGGCGACGCAGCCGTCGGGCCGCC
GTTGCTTGTATCTTTCCGAGGTCGACCCGTACCGTCCGACGGCTCGGAAA
TTCGATTCAAGCTCCACGAGCACACCAAGAACGAGGGCAAGCGCATCCTC
ACAGGCAAGACGGATCGCCTCGAGTTCTGGGCCAAAAACACGGGCGTCGG
CAGAGATCTGGCCAACTTTTGCGTGGGCGTCCTGGACGATGTGACAGGCG
AGATGACGCTGCACGAGGTGGGGCACGTCTACGGCCTGCAGCAAAAGGTT
CGCGGAGTCGACGACGTCGTCGAGGACCGCGCCACGGCGATGGAGGACCT
CGCGTATAAGGAGCGGCGCGGAATCCTCATCGACGCCTTCGGCAGTAAAA
AGTCCAAGGCCGCCGCCGCCGTCGGTGCGTCTCGTTTTTTGCCAGAATAC
CACGATGAGGTCGCCATCAATGTGTTGCAATACTGTGAATTGGAAGGACA
ATTGGACGCCTTCTTGCCACCCTCTGTGGCCATCATTATTGCGTGCTGCC
CGCATCGACTTAGGAGCCGCTTATCCGCCTTTTCTTTCGCTGCCCAATCC
TTGTCCCTCGCTTTTTCTTTCGTCCTCCCCACCTATAGCCGCCTCCAACA
TTATCGACGCCGAGCACGTCGTCGGCGGCGCCGCCGCCCTCGGCACCGTG
CTCTCTTCCTCCGGCGACGGCGGTGGCGCCAGCAGCGGCGGCACCCCGAG
CGGCACTGGCGCCGCTGCCTCCGCGATGATCGATGCGGGCGCCGAGGCGG
AGGAGGCGGGCCGTCGTCGGCTGCTGCCGCCGTACCACGCGGACGCTGGC
ACGCCGGCAGGCGTGTACCTGGTGGAGGAGATGGTGAGGAGGGAGGACCT
GGCAGCGCTCGGCAGGGAGGCCGACCGCCTCGCCACGGCCCACCCGGTGA
GATTAGACCTGACAGGAGGGAAGGGACGGCCGCGGCAGTGGCAGTAGGCA
TCTTTTGCTCATTGTTTGCTTTGCTGATCTTTCCCCCTTTTTCGTTCACT
TTCATGGTTTTGTTTCCATCATACCCGCGCGGTTTGGTGGGTTCTTCCCC
CCCAGAGATGCCTCTTCATTCGGCGTGAGCGCTTCTTTCATTACGAGTGT
GAATATTGCCGCGCCTCGGTCGGGACCTAGCAGCGTTGCGGATTTTTTTG
TCCTTGGGACCTCTTGGCCTGAAATCTATCCGTCGCAGTCTTGGATTTGT
GGCATGGTCGGGTGACCAGAGCCGGCGTTTTACGTCTTAGGAGCTTCGGC
CGCTATAGTGCCTATCCCACCACGTGCGCATCGACGATCCCGCACCCTCT
GCCTGTGCAAACTCTGTCTTCTACCGTCACCGCACCAGTCTTGTCTCTGC
ACATCTCCGCCCGTCTTTTCTTTTGCGCAGCAAGGCGAGGGCCACTGGCT
GCGCAGCTGGGTGCAGAACCGCTCCCGCGCCGCGGCCGGCGACAAGAACA
AGAAGAAGTTCTCACGGCACGCCTTGTCCCGACTGTGGACGGATGCCGGG
GCACCGCCGCGGGAGCGCATGCTGCCGCTGCTGCACCTCAACTGCATGGT
GGCGTTCCACCAGGCGTCGTCGTTCTCCAAGACCACGCCCGCCGCCGTCG
CCAAGGTGCATGATTTCTTGAGAGGGAGGAGGGGAGATGTATCTTGAGGA
GTGGATTGTGTTTTGCGGCGGAAAATCGCTTTCTCTCCTTCCATTTGAAC
CCTTCATTTGGGGGCCGCCGCTTCAACGGAAATAAATTGTGGCAGAGCGG
TCTGCCAACCCCGGTTGGCTGTTGTTGGCCTGCAATTCTGTCGTCCTTTC
CTCCCCGGCTTGAATGTCCAGCTCCGTTTCTTCAGTCGCTCAGGTTTCGT
GAAGCATCATTGAGATGAGTTGTCGTTCTTTCAATTCTAACACTATCTGT
GTCACCGCACCAATCCTCCGTCGCGGCCGCCGTTGCCTCTCTCATTTACA
AATCGACGGGACGCCTGACCCCTCTATTTATTCCTCCGCCGCTGCATTCT
TTTTCCTTCACCCGCAGGAGCTGTCCATACCGGAGGTCGTGGCGCGGGGG
CTCCTCGCCGGTTTCACCCTCTGCGGCGATGACGCCGGCGACGGCGGCGG
CGGCGGCCGGCGCACCTTTGCCCGCGACAAGTTTACGCGGGAGCGGCTGT
GCGTCCATGCGCTGTGCCTGGCACTCGTGCTGGAGGGCTGCACGCTGGAC
TTCGGCGCACTGGCGGCGGACCTGGCGTTGACGCCGGCGGCGGCGGCAGC
ACTGCTGCGGCAGCTCGGGTGTGCCGTCACGACGGGGATGCCGCCCAAGG
CGCGCCTCACTGTGCCGCTGGCGTTCCCGCGGCGGCGGGGGGCCGGCGGT
GACGCCCGCAAGTGAAAAAGACTGGGAGGAGGGAAGCGGGACAGCGAGAA
GGGTCGGGGCGCAGAGGGCTTCGGTGTTAATATATTGAATTGAGG back to topCoding sequence (CDS) from alignment at P-wetherbeei_contig1214:1681..4325+ >mRNA_P-wetherbeei_contig1214.3.1 ID=mRNA_P-wetherbeei_contig1214.3.1|Name=mRNA_P-wetherbeei_contig1214.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1425bp|location=Sequence derived from alignment at P-wetherbeei_contig1214:1681..4325+ (Phaeothamnion wetherbeei SAG_119_79) ATGGAGCTCGAGGGACCAACGAGCGCTTCTCCCACGCCTGCTCCTCAGGA TGCCGCCCCCAAGCATCCCGCCGGCGACGGTGGTGGCGAGAAGAGGAGCA GCAAGAAGCGAGCAAGATCGACGGTCCGGGTGCGCGTCCCTCCGCCCGGC GACGCAGCCGTCGGGCCGCCGTTGCTTGTATCTTTCCGAGGTCGACCCGT ACCGTCCGACGGCTCGGAAATTCGATTCAAGCTCCACGAGCACACCAAGA ACGAGGGCAAGCGCATCCTCACAGGCAAGACGGATCGCCTCGAGTTCTGG GCCAAAAACACGGGCGTCGGCAGAGATCTGGCCAACTTTTGCGTGGGCGT CCTGGACGATGTGACAGGCGAGATGACGCTGCACGAGGTGGGGCACGTCT ACGGCCTGCAGCAAAAGGTTCGCGGAGTCGACGACGTCGTCGAGGACCGC GCCACGGCGATGGAGGACCTCGCGTATAAGGAGCGGCGCGGAATCCTCAT CGACGCCTTCGGCAGTAAAAAGTCCAAGGCCGCCGCCGCCGTCGCCGCCT CCAACATTATCGACGCCGAGCACGTCGTCGGCGGCGCCGCCGCCCTCGGC ACCGTGCTCTCTTCCTCCGGCGACGGCGGTGGCGCCAGCAGCGGCGGCAC CCCGAGCGGCACTGGCGCCGCTGCCTCCGCGATGATCGATGCGGGCGCCG AGGCGGAGGAGGCGGGCCGTCGTCGGCTGCTGCCGCCGTACCACGCGGAC GCTGGCACGCCGGCAGGCGTGTACCTGGTGGAGGAGATGGTGAGGAGGGA GGACCTGGCAGCGCTCGGCAGGGAGGCCGACCGCCTCGCCACGGCCCACC CGCAAGGCGAGGGCCACTGGCTGCGCAGCTGGGTGCAGAACCGCTCCCGC GCCGCGGCCGGCGACAAGAACAAGAAGAAGTTCTCACGGCACGCCTTGTC CCGACTGTGGACGGATGCCGGGGCACCGCCGCGGGAGCGCATGCTGCCGC TGCTGCACCTCAACTGCATGGTGGCGTTCCACCAGGCGTCGTCGTTCTCC AAGACCACGCCCGCCGCCGTCGCCAAGGAGCTGTCCATACCGGAGGTCGT GGCGCGGGGGCTCCTCGCCGGTTTCACCCTCTGCGGCGATGACGCCGGCG ACGGCGGCGGCGGCGGCCGGCGCACCTTTGCCCGCGACAAGTTTACGCGG GAGCGGCTGTGCGTCCATGCGCTGTGCCTGGCACTCGTGCTGGAGGGCTG CACGCTGGACTTCGGCGCACTGGCGGCGGACCTGGCGTTGACGCCGGCGG CGGCGGCAGCACTGCTGCGGCAGCTCGGGTGTGCCGTCACGACGGGGATG CCGCCCAAGGCGCGCCTCACTGTGCCGCTGGCGTTCCCGCGGCGGCGGGG GGCCGGCGGTGACGCCCGCAAGTGA back to top
|