mRNA_P-wetherbeei_contig12133.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig12133.3.1
Unique NamemRNA_P-wetherbeei_contig12133.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig12133.3.1 vs. uniprot
Match: A0A8D5LXK0_9BURK (UPF0225 protein MIZ03_4724 n=1 Tax=Rhodoferax sp. MIZ03 TaxID=2798804 RepID=A0A8D5LXK0_9BURK)

HSP 1 Score: 198 bits (503), Expect = 3.130e-63
Identity = 92/130 (70.77%), Postives = 102/130 (78.46%), Query Frame = 1
Query:    4 KKALPRYLPCPCGSGEAYTACCQRWHDGLEAGNHAPTPEALMRSRYSAYAVGLIDYLLQTWHPSTGPGELELSPIKWIGLEVLNAETAGDAGVVEFVALCRVNGRAQRMHEVSRFLRQDGRWYYIDGQDQ 393
            K AL  +  CPC SG+ Y ACC  WH G  AG  APTPEALMRSRYSAY +GLIDYLL TWHPST PGELELSP+KW+GLEV +A+  GDAGVVEFVA  R NGR  R+HEVSRF+R+DGRW YIDGQ Q
Sbjct:    3 KNALASHATCPCDSGQPYGACCGPWHTGYAAGQQAPTPEALMRSRYSAYVLGLIDYLLATWHPSTSPGELELSPVKWLGLEVRHAQATGDAGVVEFVARYRENGRGVRLHEVSRFVREDGRWLYIDGQMQ 132          
BLAST of mRNA_P-wetherbeei_contig12133.3.1 vs. uniprot
Match: A0A1H0SCY4_9BURK (UPF0225 protein SAMN05216303_104137 n=1 Tax=Rhodoferax sp. OV413 TaxID=1855285 RepID=A0A1H0SCY4_9BURK)

HSP 1 Score: 197 bits (502), Expect = 4.440e-63
Identity = 90/130 (69.23%), Postives = 105/130 (80.77%), Query Frame = 1
Query:    1 LKKAL-PRYLPCPCGSGEAYTACCQRWHDGLEAGNHAPTPEALMRSRYSAYAVGLIDYLLQTWHPSTGPGELELSPIKWIGLEVLNAETAGDAGVVEFVALCRVNGRAQRMHEVSRFLRQDGRWYYIDGQ 387
            +KK L P + PCPC SG+ Y  CC  WH G++AG +APT EALMRSRYS Y +GL++YLL TWHPST PG+LEL P+KW+GLEV +A  AGDAGVVEFVA CR  GRA+RMHE SRF+RQDGRWYYIDGQ
Sbjct:    1 MKKNLHPAHAPCPCDSGKPYAECCAPWHKGMDAGIYAPTAEALMRSRYSGYVLGLLEYLLFTWHPSTAPGDLELPPVKWLGLEVRHAMEAGDAGVVEFVARCRDGGRAERMHETSRFVRQDGRWYYIDGQ 130          
BLAST of mRNA_P-wetherbeei_contig12133.3.1 vs. uniprot
Match: A0A4P5U8M4_9BURK (UPF0225 protein LBMAG30_14710 n=1 Tax=Comamonadaceae bacterium TaxID=1871071 RepID=A0A4P5U8M4_9BURK)

HSP 1 Score: 196 bits (498), Expect = 1.810e-62
Identity = 87/124 (70.16%), Postives = 98/124 (79.03%), Query Frame = 1
Query:   13 LPRYLPCPCGSGEAYTACCQRWHDGLEAGNHAPTPEALMRSRYSAYAVGLIDYLLQTWHPSTGPGELELSPIKWIGLEVLNAETAGDAGVVEFVALCRVNGRAQRMHEVSRFLRQDGRWYYIDG 384
            L  + PCPC SG+ Y  CC  WH GL  G HAPTPE LMRSRYSAY +GLIDYLL TWHP+T PGELEL P+KW+GLEV  A+ + DAGVVEFVA CR NGRAQRMHE SRF+R+ GRWYY+DG
Sbjct:    6 LSSHAPCPCDSGQTYVDCCGPWHAGLAQGLHAPTPETLMRSRYSAYVLGLIDYLLATWHPATAPGELELPPLKWLGLEVRLAQASADAGVVEFVARCRENGRAQRMHETSRFVREQGRWYYVDG 129          
BLAST of mRNA_P-wetherbeei_contig12133.3.1 vs. uniprot
Match: A0A1J5BXL3_9BURK (UPF0225 protein AUK51_11155 n=2 Tax=unclassified Comamonadaceae TaxID=83494 RepID=A0A1J5BXL3_9BURK)

HSP 1 Score: 194 bits (494), Expect = 7.350e-62
Identity = 89/131 (67.94%), Postives = 102/131 (77.86%), Query Frame = 1
Query:    4 KKALPRYLPCPCGSGEAYTACCQRWHDGLEAGNHAPTPEALMRSRYSAYAVGLIDYLLQTWHPSTGPGELELSPIKWIGLEVLNAETAGDAGVVEFVALCRVNGRAQRMHEVSRFLRQDGRWYYIDGQDQS 396
            K AL  +  CPC SG+ Y  CC  WH GL  G HAPTPEALMRSRYSAY +GLIDYLL TWHPST PGELEL P+KW+GLEV +A+ AGD GVVEFVA  R +GR  RMHE+SRF+R+DGRW YIDG+ Q+
Sbjct:    3 KNALAAHAVCPCDSGKTYADCCGPWHAGLPQGVHAPTPEALMRSRYSAYGLGLIDYLLATWHPSTSPGELELPPLKWLGLEVRHAQAAGDVGVVEFVARYRESGRGGRMHEISRFVREDGRWLYIDGEQQA 133          
BLAST of mRNA_P-wetherbeei_contig12133.3.1 vs. uniprot
Match: UPI001ADF3D17 (YchJ family metal-binding protein n=1 Tax=Rhodoferax sp. AJA081-3 TaxID=2752316 RepID=UPI001ADF3D17)

HSP 1 Score: 194 bits (493), Expect = 1.040e-61
Identity = 87/121 (71.90%), Postives = 101/121 (83.47%), Query Frame = 1
Query:   25 LPCPCGSGEAYTACCQRWHDGLEAGNHAPTPEALMRSRYSAYAVGLIDYLLQTWHPSTGPGELELSPIKWIGLEVLNAETAGDAGVVEFVALCRVNGRAQRMHEVSRFLRQDGRWYYIDGQ 387
            + CPCGSG     CC +WH GL AG  APTPEALMRSRYSAY +GLIDYL+ TWHPST PG+LEL PIKW+GLEV +AE +GDAGVVEFVA C+V+GRA+RMHE+SRF+R+  RWYYIDGQ
Sbjct:    9 IECPCGSGLDLADCCGQWHKGLAAGVFAPTPEALMRSRYSAYVLGLIDYLIATWHPSTAPGDLELQPIKWLGLEVRHAEESGDAGVVEFVARCKVSGRAERMHELSRFVREQARWYYIDGQ 129          
BLAST of mRNA_P-wetherbeei_contig12133.3.1 vs. uniprot
Match: A0A2N2SXQ1_9PROT (UPF0225 protein CVU24_14245 n=1 Tax=Betaproteobacteria bacterium HGW-Betaproteobacteria-18 TaxID=2013709 RepID=A0A2N2SXQ1_9PROT)

HSP 1 Score: 192 bits (489), Expect = 4.250e-61
Identity = 86/128 (67.19%), Postives = 102/128 (79.69%), Query Frame = 1
Query:    4 KKALPRYLPCPCGSGEAYTACCQRWHDGLEAGNHAPTPEALMRSRYSAYAVGLIDYLLQTWHPSTGPGELELSPIKWIGLEVLNAETAGDAGVVEFVALCRVNGRAQRMHEVSRFLRQDGRWYYIDGQ 387
            K AL  +  CPCGSG+ Y  CC RWH GL +G HAP PEALMRSRYSAY +GLIDYLL TWHPST PGEL+L P+KW+GLEV +A+  GDAGVVEFVA  R +G+  R+HE+SRF+R+DGRW YIDG+
Sbjct:    3 KNALAAHAACPCGSGQPYGDCCGRWHAGLASGVHAPAPEALMRSRYSAYGLGLIDYLLATWHPSTSPGELDLPPLKWLGLEVRHAQATGDAGVVEFVARYRDSGKGVRLHEISRFVREDGRWLYIDGE 130          
BLAST of mRNA_P-wetherbeei_contig12133.3.1 vs. uniprot
Match: A0A1Y1R093_9GAMM (UPF0225 protein BWK73_00665 n=2 Tax=Proteobacteria TaxID=1224 RepID=A0A1Y1R093_9GAMM)

HSP 1 Score: 191 bits (485), Expect = 1.730e-60
Identity = 83/119 (69.75%), Postives = 96/119 (80.67%), Query Frame = 1
Query:   28 PCPCGSGEAYTACCQRWHDGLEAGNHAPTPEALMRSRYSAYAVGLIDYLLQTWHPSTGPGELELSPIKWIGLEVLNAETAGDAGVVEFVALCRVNGRAQRMHEVSRFLRQDGRWYYIDG 384
            PCPCGSG+ Y  CC RWH GL  G HAPTPEALMRSRYSAY +G+IDYLL TWHPST PGELEL P+KW+ L++ +AE  GDAGVVEF+A  R  GR  R+HE+SRF+R+DGRW YIDG
Sbjct:   11 PCPCGSGKPYADCCGRWHTGLSEGMHAPTPEALMRSRYSAYGLGMIDYLLATWHPSTAPGELELPPVKWLELDIRHAEMTGDAGVVEFIARLRDQGRGARLHEISRFVREDGRWLYIDG 129          
BLAST of mRNA_P-wetherbeei_contig12133.3.1 vs. uniprot
Match: UPI000E0CF0A9 (YchJ family metal-binding protein n=1 Tax=Rhodoferax ferrireducens TaxID=192843 RepID=UPI000E0CF0A9)

HSP 1 Score: 191 bits (485), Expect = 1.730e-60
Identity = 89/130 (68.46%), Postives = 98/130 (75.38%), Query Frame = 1
Query:    1 LKKALPRYLP-CPCGSGEAYTACCQRWHDGLEAGNHAPTPEALMRSRYSAYAVGLIDYLLQTWHPSTGPGELELSPIKWIGLEVLNAETAGDAGVVEFVALCRVNGRAQRMHEVSRFLRQDGRWYYIDGQ 387
            +KK  P   P C CGSG  Y ACC  WH GL  G HAP PEALMRSRYSA+ +G +DYL  TWHPST PGEL LSP+KW+GLEV  A+  GDAGVVEFVA CR  GRAQR+HE SRF+RQ GRWYYIDGQ
Sbjct:    1 MKKPPPLSHPACTCGSGRPYAACCGPWHAGLAEGVHAPNPEALMRSRYSAFVLGFVDYLRATWHPSTAPGELALSPVKWLGLEVRRAQVDGDAGVVEFVARCREGGRAQRLHETSRFVRQQGRWYYIDGQ 130          
BLAST of mRNA_P-wetherbeei_contig12133.3.1 vs. uniprot
Match: Q21RE1_ALBFT (UPF0225 protein Rfer_3964 n=3 Tax=Rhodoferax TaxID=28065 RepID=Q21RE1_ALBFT)

HSP 1 Score: 191 bits (484), Expect = 2.700e-60
Identity = 90/129 (69.77%), Postives = 101/129 (78.29%), Query Frame = 1
Query:    1 LKKAL-PRYLPCPCGSGEAYTACCQRWHDGLEAGNHAPTPEALMRSRYSAYAVGLIDYLLQTWHPSTGPGELELSPIKWIGLEVLNAETAGDAGVVEFVALCRVNGRAQRMHEVSRFLRQDGRWYYIDG 384
            +KK L P    CPC SGE Y  CC  WH GL  G +APTPEALMRSRYSAY +GLIDYLL TWHPST PGELEL P+KW+GLE+ +A+  G+AGVVEFVA  R NGRA RMHE SRF+R+DGRWYYIDG
Sbjct:    1 MKKNLHPARAACPCDSGETYGNCCGPWHAGLADGVYAPTPEALMRSRYSAYVLGLIDYLLATWHPSTSPGELELPPLKWLGLELRHAQATGEAGVVEFVARYRENGRAGRMHETSRFVREDGRWYYIDG 129          
BLAST of mRNA_P-wetherbeei_contig12133.3.1 vs. uniprot
Match: UPI001D09D4A5 (YchJ family protein n=1 Tax=Rhodoferax sp. U2-2l TaxID=2884000 RepID=UPI001D09D4A5)

HSP 1 Score: 190 bits (483), Expect = 3.480e-60
Identity = 84/118 (71.19%), Postives = 96/118 (81.36%), Query Frame = 1
Query:   31 CPCGSGEAYTACCQRWHDGLEAGNHAPTPEALMRSRYSAYAVGLIDYLLQTWHPSTGPGELELSPIKWIGLEVLNAETAGDAGVVEFVALCRVNGRAQRMHEVSRFLRQDGRWYYIDG 384
            CPCGSG+ Y ACC +WH G  AG HAPTPEALMRSRYSAY +GLIDYLL TWHPST PGELEL P+KW+ L++ +AE  GDAGVVEFVA  R  GR  R+HE+SRF+R+DGRW YIDG
Sbjct:   12 CPCGSGQTYAACCGQWHAGWRAGLHAPTPEALMRSRYSAYGLGLIDYLLATWHPSTAPGELELPPVKWLELDIRHAEMTGDAGVVEFVARLREQGRGARLHEISRFVREDGRWLYIDG 129          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig12133.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A8D5LXK0_9BURK3.130e-6370.77UPF0225 protein MIZ03_4724 n=1 Tax=Rhodoferax sp. ... [more]
A0A1H0SCY4_9BURK4.440e-6369.23UPF0225 protein SAMN05216303_104137 n=1 Tax=Rhodof... [more]
A0A4P5U8M4_9BURK1.810e-6270.16UPF0225 protein LBMAG30_14710 n=1 Tax=Comamonadace... [more]
A0A1J5BXL3_9BURK7.350e-6267.94UPF0225 protein AUK51_11155 n=2 Tax=unclassified C... [more]
UPI001ADF3D171.040e-6171.90YchJ family metal-binding protein n=1 Tax=Rhodofer... [more]
A0A2N2SXQ1_9PROT4.250e-6167.19UPF0225 protein CVU24_14245 n=1 Tax=Betaproteobact... [more]
A0A1Y1R093_9GAMM1.730e-6069.75UPF0225 protein BWK73_00665 n=2 Tax=Proteobacteria... [more]
UPI000E0CF0A91.730e-6068.46YchJ family metal-binding protein n=1 Tax=Rhodofer... [more]
Q21RE1_ALBFT2.700e-6069.77UPF0225 protein Rfer_3964 n=3 Tax=Rhodoferax TaxID... [more]
UPI001D09D4A53.480e-6071.19YchJ family protein n=1 Tax=Rhodoferax sp. U2-2l T... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig12133contigP-wetherbeei_contig12133:1180..1575 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog338969.Rfer_3964
Preferred nameychJ
PFAMsSEC-C
Model size396
Max annot lvl28216|Betaproteobacteria
KEGG koko:K09858
Hectar predicted targeting categoryother localisation
Exons1
Evalue4.43e-61
EggNOG OGsCOG3012@1|root,COG3012@2|Bacteria,1MZZK@1224|Proteobacteria,2VTZE@28216|Betaproteobacteria,4AEE4@80864|Comamonadaceae
DescriptionBelongs to the UPF0225 family
Cds size396
COG categoryS
BRITEko00000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185938.7764642-CDS-P-wetherbeei_contig12133:1179..15751683185938.7764642-CDS-P-wetherbeei_contig12133:1179..1575Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig12133 1180..1575 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig12133.3.1prot_P-wetherbeei_contig12133.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig12133 1180..1575 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig12133.3.1

>prot_P-wetherbeei_contig12133.3.1 ID=prot_P-wetherbeei_contig12133.3.1|Name=mRNA_P-wetherbeei_contig12133.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=132bp
LKKALPRYLPCPCGSGEAYTACCQRWHDGLEAGNHAPTPEALMRSRYSAY
AVGLIDYLLQTWHPSTGPGELELSPIKWIGLEVLNAETAGDAGVVEFVAL
CRVNGRAQRMHEVSRFLRQDGRWYYIDGQDQS
back to top

mRNA from alignment at P-wetherbeei_contig12133:1180..1575+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig12133.3.1 ID=mRNA_P-wetherbeei_contig12133.3.1|Name=mRNA_P-wetherbeei_contig12133.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=396bp|location=Sequence derived from alignment at P-wetherbeei_contig12133:1180..1575+ (Phaeothamnion wetherbeei SAG_119_79)
TTGAAGAAGGCCCTGCCGCGCTACCTGCCCTGCCCCTGTGGCAGCGGGGA GGCTTACACCGCGTGCTGCCAGCGCTGGCATGACGGGTTGGAAGCCGGAA ATCACGCCCCCACCCCCGAAGCGCTGATGCGCTCCCGCTACAGCGCCTAC GCAGTGGGCCTCATCGACTACCTGCTGCAGACCTGGCACCCGTCGACCGG GCCGGGCGAGCTGGAGTTGTCGCCCATCAAGTGGATCGGGCTGGAGGTGC TGAATGCCGAAACCGCGGGTGACGCGGGCGTGGTCGAGTTCGTCGCGCTG TGCCGCGTGAACGGGCGCGCGCAGCGGATGCACGAGGTCAGCCGCTTCCT GCGCCAGGACGGGCGCTGGTACTACATCGACGGGCAGGACCAGTCG
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig12133:1180..1575+

>mRNA_P-wetherbeei_contig12133.3.1 ID=mRNA_P-wetherbeei_contig12133.3.1|Name=mRNA_P-wetherbeei_contig12133.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=396bp|location=Sequence derived from alignment at P-wetherbeei_contig12133:1180..1575+ (Phaeothamnion wetherbeei SAG_119_79)
TTGAAGAAGGCCCTGCCGCGCTACCTGCCCTGCCCCTGTGGCAGCGGGGA
GGCTTACACCGCGTGCTGCCAGCGCTGGCATGACGGGTTGGAAGCCGGAA
ATCACGCCCCCACCCCCGAAGCGCTGATGCGCTCCCGCTACAGCGCCTAC
GCAGTGGGCCTCATCGACTACCTGCTGCAGACCTGGCACCCGTCGACCGG
GCCGGGCGAGCTGGAGTTGTCGCCCATCAAGTGGATCGGGCTGGAGGTGC
TGAATGCCGAAACCGCGGGTGACGCGGGCGTGGTCGAGTTCGTCGCGCTG
TGCCGCGTGAACGGGCGCGCGCAGCGGATGCACGAGGTCAGCCGCTTCCT
GCGCCAGGACGGGCGCTGGTACTACATCGACGGGCAGGACCAGTCG
back to top