mRNA_P-wetherbeei_contig12133.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig12133.2.1
Unique NamemRNA_P-wetherbeei_contig12133.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig12133.2.1 vs. uniprot
Match: V4RLC0_9HYPH (Uncharacterized protein n=1 Tax=Lutibaculum baratangense AMV1 TaxID=631454 RepID=V4RLC0_9HYPH)

HSP 1 Score: 143 bits (361), Expect = 4.810e-41
Identity = 69/149 (46.31%), Postives = 98/149 (65.77%), Query Frame = 1
Query:    1 MALELKGEQALKVGQARLWALLNDPDVLAKTIPGCNTVRALGEDRYEMGLKLQVANVSGEYMGSVAITEKQEPSHYVLAVEGQGSIGFMKGSAAFDLEPKGDNETLLHYAGSAEVGGVVAGVGQRVLSGVAKYMVGRFFKALEKHIAEN 447
            M L+++GE+ +   QA LW  LNDP+VL K IPGC ++  L  D Y++ ++L+VA V G + G +A+ +K+ P+   + V G GS+G   G A F L PK +  T L YAG  EVGG+VAGVGQR+L  V+K+++ +FF AL KH AE 
Sbjct:    1 MKLDIRGEEEIAATQAELWDALNDPEVLTKCIPGCRSMTELDPDHYKVEMQLKVAAVGGSFEGEIALKDKEPPTTCRITVSGAGSLGTGTGEAQFTLVPKDEATTTLQYAGEGEVGGLVAGVGQRILGSVSKHLIKQFFTALRKHFAEK 149          
BLAST of mRNA_P-wetherbeei_contig12133.2.1 vs. uniprot
Match: A0A522G858_9BURK (Alpha/beta fold hydrolase n=2 Tax=Burkholderiales TaxID=80840 RepID=A0A522G858_9BURK)

HSP 1 Score: 151 bits (381), Expect = 5.130e-41
Identity = 77/149 (51.68%), Postives = 105/149 (70.47%), Query Frame = 1
Query:    1 MALELKGEQALKVGQARLWALLNDPDVLAKTIPGCNTVRALGEDRYEMGLKLQVANVSGEYMGSVAITEKQEPSHYVLAVEGQGSIGFMKGSAAFDLEPKGDNETLLHYAGSAEVGGVVAGVGQRVLSGVAKYMVGRFFKALEKHIAEN 447
            MAL+LKG+  + + +  +W LLN P VL  +IPGCN +   GED+YE+ L L V +VSG Y GSV +++K+   +Y L + G+GSIGF+KG+A F L   GD ET + Y G A+VGG+VAGVG RVL GVAK+MV RFFKA + +I ++
Sbjct:    1 MALQLKGDHKVPLDREHVWCLLNSPVVLEASIPGCNKLSRTGEDQYELALGLVVGSVSGNYKGSVVLSDKKTMEYYDLTLMGEGSIGFVKGAAHFVLTQDGD-ETTIAYDGQADVGGLVAGVGNRVLGGVAKFMVKRFFKAFDAYIKDH 148          
BLAST of mRNA_P-wetherbeei_contig12133.2.1 vs. uniprot
Match: A0A433XKR7_9HYPH (Carbon monoxide dehydrogenase n=1 Tax=Arsenicitalea aurantiaca TaxID=1783274 RepID=A0A433XKR7_9HYPH)

HSP 1 Score: 139 bits (351), Expect = 1.630e-39
Identity = 67/144 (46.53%), Postives = 95/144 (65.97%), Query Frame = 1
Query:    1 MALELKGEQALKVGQARLWALLNDPDVLAKTIPGCNTVRALGEDRYEMGLKLQVANVSGEYMGSVAITEKQEPSHYVLAVEGQGSIGFMKGSAAFDLEPKGDNETLLHYAGSAEVGGVVAGVGQRVLSGVAKYMVGRFFKALEK 432
            M L+L G++ +     RLW  LN PDVL + IPGC ++     D Y++ ++L+VA V G + G VA+TEKQ PS   + V G+GS+G   G A+F + P+ D  +LL Y G  E+GG+VAGVGQR+L  V+K++ G+FFKAL K
Sbjct:    1 MKLDLSGKEVINTSPERLWEALNSPDVLTRCIPGCKSMTETAPDHYDVLMELKVAAVGGTFEGKVALTEKQPPSTCNITVSGEGSLGNGTGKASFTITPEPDGASLLTYEGEGEIGGLVAGVGQRILKSVSKHLTGQFFKALRK 144          
BLAST of mRNA_P-wetherbeei_contig12133.2.1 vs. uniprot
Match: UPI001BA98341 (carbon monoxide dehydrogenase subunit G n=1 Tax=Bradyrhizobium sp. AUGA SZCCT0042 TaxID=2807651 RepID=UPI001BA98341)

HSP 1 Score: 139 bits (351), Expect = 1.630e-39
Identity = 66/144 (45.83%), Postives = 98/144 (68.06%), Query Frame = 1
Query:    1 MALELKGEQALKVGQARLWALLNDPDVLAKTIPGCNTVRALGEDRYEMGLKLQVANVSGEYMGSVAITEKQEPSHYVLAVEGQGSIGFMKGSAAFDLEPKGDNETLLHYAGSAEVGGVVAGVGQRVLSGVAKYMVGRFFKALEK 432
            M L++ G++ +     RLWA LNDP+VL + IPGC  +  +  D Y++ ++L+VA V G + G +A+++K+ P    + V G GS+G   G+A FD+EP G+  + L Y GS E+GG+VAGVGQR+LS V+K++VGRFF AL K
Sbjct:    1 MKLDIGGDEKISAPVDRLWAALNDPEVLTRCIPGCTKMTEVSPDAYKVEMQLRVAAVGGSFEGEIALSDKEAPRSCNIKVSGAGSLGHGNGTARFDIEPDGEGASRLVYKGSGEIGGLVAGVGQRILSSVSKHLVGRFFVALRK 144          
BLAST of mRNA_P-wetherbeei_contig12133.2.1 vs. uniprot
Match: UPI001BA7FD76 (carbon monoxide dehydrogenase subunit G n=3 Tax=Bradyrhizobium TaxID=374 RepID=UPI001BA7FD76)

HSP 1 Score: 139 bits (350), Expect = 2.310e-39
Identity = 64/144 (44.44%), Postives = 97/144 (67.36%), Query Frame = 1
Query:    1 MALELKGEQALKVGQARLWALLNDPDVLAKTIPGCNTVRALGEDRYEMGLKLQVANVSGEYMGSVAITEKQEPSHYVLAVEGQGSIGFMKGSAAFDLEPKGDNETLLHYAGSAEVGGVVAGVGQRVLSGVAKYMVGRFFKALEK 432
            M L++ G++ +     RLW  LNDPDVL + IPGC  +  +  D Y++ ++L+VA V G + G +A+++K+ P    + V G G++G   G+A FD+EP G+  + L Y G+ E+GG+VAGVGQR+LS V+K++VGRFF AL K
Sbjct:    1 MKLDIGGDEKISASAERLWTALNDPDVLTRCIPGCKKMTEISPDSYKVEMQLRVAAVGGSFEGEIALSDKEAPRSCNIKVSGAGTLGHGNGTARFDIEPDGEGASKLVYKGAGEIGGLVAGVGQRILSSVSKHLVGRFFVALRK 144          
BLAST of mRNA_P-wetherbeei_contig12133.2.1 vs. uniprot
Match: A0A1F9LAB0_9DELT (Uncharacterized protein n=5 Tax=unclassified Deltaproteobacteria TaxID=122706 RepID=A0A1F9LAB0_9DELT)

HSP 1 Score: 138 bits (348), Expect = 3.140e-39
Identity = 65/141 (46.10%), Postives = 99/141 (70.21%), Query Frame = 1
Query:    7 LELKGEQALKVGQARLWALLNDPDVLAKTIPGCNTVRALGEDRYEMGLKLQVANVSGEYMGSVAITEKQEPSHYVLAVEGQGSIGFMKGSAAFDLEPKGDNETLLHYAGSAEVGGVVAGVGQRVLSGVAKYMVGRFFKALE 429
            ++++G    K  + ++W +L DP ++A+ +PGC  ++ +G D+YE  +K+ +A+V G Y G V+I E+Q PSHYVL+ EG G  GFMKG  + DLE K + ET L Y+  A++GG++AGVGQR+L GVA+ MV +FFK +E
Sbjct:    1 MKIEGSYTFKAPRQKVWDVLLDPKMIAQCMPGCEGLKEIGPDQYEATMKVGIASVKGTYKGKVSIKERQAPSHYVLSGEGSGGPGFMKGDMSIDLEEK-NGETTLKYSTDAKIGGLIAGVGQRMLGGVARMMVDQFFKKME 140          
BLAST of mRNA_P-wetherbeei_contig12133.2.1 vs. uniprot
Match: UPI001BD2A11C (carbon monoxide dehydrogenase subunit G n=2 Tax=Bradyrhizobium sp. dw_78 TaxID=2719793 RepID=UPI001BD2A11C)

HSP 1 Score: 139 bits (349), Expect = 3.180e-39
Identity = 63/144 (43.75%), Postives = 98/144 (68.06%), Query Frame = 1
Query:    1 MALELKGEQALKVGQARLWALLNDPDVLAKTIPGCNTVRALGEDRYEMGLKLQVANVSGEYMGSVAITEKQEPSHYVLAVEGQGSIGFMKGSAAFDLEPKGDNETLLHYAGSAEVGGVVAGVGQRVLSGVAKYMVGRFFKALEK 432
            M L++ G +A+      LW  LNDP+VL + +PGC ++  +  D Y++ ++L+VA V G + G +++ +KQEP    + V G GS+G   G+A F++EP GDN + L Y G+ E+GG+VAGVGQR+L+ V+K+++GRFF AL K
Sbjct:    1 MKLDIGGNEAIPASVDALWVALNDPNVLTRCVPGCKSMTEIAPDSYKVDMQLKVAAVGGSFEGEISLFDKQEPKTCSIKVSGAGSLGHGNGTARFEIEPDGDNGSRLVYKGNGEIGGLVAGVGQRILASVSKHLIGRFFVALRK 144          
BLAST of mRNA_P-wetherbeei_contig12133.2.1 vs. uniprot
Match: A0A521SAK7_9BACT (Carbon monoxide dehydrogenase (Fragment) n=1 Tax=bacterium TaxID=1869227 RepID=A0A521SAK7_9BACT)

HSP 1 Score: 138 bits (347), Expect = 3.600e-39
Identity = 65/135 (48.15%), Postives = 95/135 (70.37%), Query Frame = 1
Query:   34 KVGQARLWALLNDPDVLAKTIPGCNTVRALGEDRYEMGLKLQVANVSGEYMGSVAITEKQEPSHYVLAVEGQGSIGFMKGSAAFDLEPKGDNETLLHYAGSAEVGGVVAGVGQRVLSGVAKYMVGRFFKALEKHI 438
            K  + R+W  L DP ++A+ +PGC  ++ +G D+YE  +K+ +A+V G Y G V+I EK+ P HYVL+ EG GS GFM+G  + DLE K D ET+L Y+  A+VGG++AG+GQR+L G+AK MV +FFK +E  +
Sbjct:    3 KAPRQRVWDALLDPKIMAQCMPGCEGLKEIGPDQYEATMKVGIASVKGSYKGKVSIKEKRAPFHYVLSGEGSGSPGFMQGDVSIDLEEK-DGETVLKYSTDAKVGGLIAGIGQRMLGGIAKMMVDQFFKKMESFV 136          
BLAST of mRNA_P-wetherbeei_contig12133.2.1 vs. uniprot
Match: E6SHY2_THEM7 (Carbon monoxide dehydrogenase subunit G n=3 Tax=Firmicutes TaxID=1239 RepID=E6SHY2_THEM7)

HSP 1 Score: 138 bits (348), Expect = 3.760e-39
Identity = 69/147 (46.94%), Postives = 96/147 (65.31%), Query Frame = 1
Query:    7 LELKGEQALKVGQARLWALLNDPDVLAKTIPGCNTVRALGEDRYEMGLKLQVANVSGEYMGSVAITEKQEPSHYVLAVEGQGSIGFMKGSAAFDLEPKGDNETLLHYAGSAEVGGVVAGVGQRVLSGVAKYMVGRFFKALEKHIAEN 447
            +++ G Q +      +WA LND +VLA+  PGC  +  +GEDRYE  L+L +A + G Y G +AI +K+ PS Y L +EG+G  GF++ S   DLEP+GD  TLL Y G A+VGG VA +GQRVL GVAK ++G+FF  L + I + 
Sbjct:    1 MQVAGSQKIAAPVDMVWACLNDQEVLARCTPGCKQLVKVGEDRYEAELELGIAAIRGRYKGRIAIEDKEPPSRYRLNIEGEGGPGFVRASLVLDLEPQGD-ATLLKYQGEAQVGGPVASIGQRVLGGVAKMIMGQFFGGLAREIEQR 146          
BLAST of mRNA_P-wetherbeei_contig12133.2.1 vs. uniprot
Match: A0A6L5FDW2_9HYPH (Carbon monoxide dehydrogenase n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A6L5FDW2_9HYPH)

HSP 1 Score: 137 bits (345), Expect = 1.100e-38
Identity = 65/146 (44.52%), Postives = 97/146 (66.44%), Query Frame = 1
Query:    1 MALELKGEQALKVGQARLWALLNDPDVLAKTIPGCNTVRALGEDRYEMGLKLQVANVSGEYMGSVAITEKQEPSHYVLAVEGQGSIGFMKGSAAFDLEPKGDNETLLHYAGSAEVGGVVAGVGQRVLSGVAKYMVGRFFKALEKHI 438
            M L++ GE+   +    LW  LNDP VL K IPGC  + A+G+DRY++ L L+VA+V G + G + +++K  P+   ++V G G++G  +GSA F L    +   ++ YAG  E+GG+VAGVGQRVL GVAK++VG+FFKA  + +
Sbjct:    1 MKLDIGGEETFPMAAEPLWTALNDPAVLKKCIPGCQDMIAVGDDRYKLILALRVASVGGTFEGEIVLSDKIAPARCRVSVTGSGTLGHGEGSATFSLASDANGAAIMRYAGEGEIGGLVAGVGQRVLKGVAKHLVGQFFKAFRREV 146          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig12133.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
V4RLC0_9HYPH4.810e-4146.31Uncharacterized protein n=1 Tax=Lutibaculum barata... [more]
A0A522G858_9BURK5.130e-4151.68Alpha/beta fold hydrolase n=2 Tax=Burkholderiales ... [more]
A0A433XKR7_9HYPH1.630e-3946.53Carbon monoxide dehydrogenase n=1 Tax=Arsenicitale... [more]
UPI001BA983411.630e-3945.83carbon monoxide dehydrogenase subunit G n=1 Tax=Br... [more]
UPI001BA7FD762.310e-3944.44carbon monoxide dehydrogenase subunit G n=3 Tax=Br... [more]
A0A1F9LAB0_9DELT3.140e-3946.10Uncharacterized protein n=5 Tax=unclassified Delta... [more]
UPI001BD2A11C3.180e-3943.75carbon monoxide dehydrogenase subunit G n=2 Tax=Br... [more]
A0A521SAK7_9BACT3.600e-3948.15Carbon monoxide dehydrogenase (Fragment) n=1 Tax=b... [more]
E6SHY2_THEM73.760e-3946.94Carbon monoxide dehydrogenase subunit G n=3 Tax=Fi... [more]
A0A6L5FDW2_9HYPH1.100e-3844.52Carbon monoxide dehydrogenase n=1 Tax=Hyphomicrobi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig12133contigP-wetherbeei_contig12133:720..1172 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog631454.N177_0635
PFAMsCOXG
Model size453
Max annot lvl28211|Alphaproteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue7.89e-42
EggNOG OGsCOG3427@1|root,COG3427@2|Bacteria,1NNNP@1224|Proteobacteria,2URBU@28211|Alphaproteobacteria
DescriptionCarbon monoxide dehydrogenase subunit G (CoxG)
Cds size453
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185938.74497-CDS-P-wetherbeei_contig12133:719..11721683185938.74497-CDS-P-wetherbeei_contig12133:719..1172Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig12133 720..1172 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig12133.2.1prot_P-wetherbeei_contig12133.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig12133 720..1172 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig12133.2.1

>prot_P-wetherbeei_contig12133.2.1 ID=prot_P-wetherbeei_contig12133.2.1|Name=mRNA_P-wetherbeei_contig12133.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=151bp
MALELKGEQALKVGQARLWALLNDPDVLAKTIPGCNTVRALGEDRYEMGL
KLQVANVSGEYMGSVAITEKQEPSHYVLAVEGQGSIGFMKGSAAFDLEPK
GDNETLLHYAGSAEVGGVVAGVGQRVLSGVAKYMVGRFFKALEKHIAENP
*
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mRNA from alignment at P-wetherbeei_contig12133:720..1172+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig12133.2.1 ID=mRNA_P-wetherbeei_contig12133.2.1|Name=mRNA_P-wetherbeei_contig12133.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=453bp|location=Sequence derived from alignment at P-wetherbeei_contig12133:720..1172+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCGCTCGAACTGAAAGGCGAGCAGGCACTCAAGGTCGGCCAGGCGCG GTTGTGGGCCCTGCTGAACGATCCCGACGTGCTGGCGAAGACCATCCCCG GCTGCAACACGGTGAGGGCGCTCGGCGAAGACCGCTACGAAATGGGCCTC AAGCTGCAGGTCGCCAACGTCTCGGGCGAGTACATGGGCAGCGTGGCGAT CACCGAGAAGCAGGAACCTTCCCACTATGTGCTGGCAGTCGAGGGGCAGG GGTCCATCGGCTTCATGAAAGGCAGCGCCGCCTTCGACCTGGAGCCCAAG GGCGACAACGAGACGCTGCTGCATTACGCGGGCAGCGCGGAGGTCGGCGG CGTCGTGGCCGGGGTCGGACAGCGCGTGCTGTCGGGCGTGGCGAAGTACA TGGTGGGGCGGTTCTTCAAGGCGCTGGAAAAGCACATCGCCGAGAATCCG TGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig12133:720..1172+

>mRNA_P-wetherbeei_contig12133.2.1 ID=mRNA_P-wetherbeei_contig12133.2.1|Name=mRNA_P-wetherbeei_contig12133.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=453bp|location=Sequence derived from alignment at P-wetherbeei_contig12133:720..1172+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCGCTCGAACTGAAAGGCGAGCAGGCACTCAAGGTCGGCCAGGCGCG
GTTGTGGGCCCTGCTGAACGATCCCGACGTGCTGGCGAAGACCATCCCCG
GCTGCAACACGGTGAGGGCGCTCGGCGAAGACCGCTACGAAATGGGCCTC
AAGCTGCAGGTCGCCAACGTCTCGGGCGAGTACATGGGCAGCGTGGCGAT
CACCGAGAAGCAGGAACCTTCCCACTATGTGCTGGCAGTCGAGGGGCAGG
GGTCCATCGGCTTCATGAAAGGCAGCGCCGCCTTCGACCTGGAGCCCAAG
GGCGACAACGAGACGCTGCTGCATTACGCGGGCAGCGCGGAGGTCGGCGG
CGTCGTGGCCGGGGTCGGACAGCGCGTGCTGTCGGGCGTGGCGAAGTACA
TGGTGGGGCGGTTCTTCAAGGCGCTGGAAAAGCACATCGCCGAGAATCCG
TGA
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