mRNA_P-wetherbeei_contig1213.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1213.3.1
Unique NamemRNA_P-wetherbeei_contig1213.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig1213.3.1 vs. uniprot
Match: A0A1E4FK63_9BACT (HTH cro/C1-type domain-containing protein n=1 Tax=bacterium SCN 62-11 TaxID=1660156 RepID=A0A1E4FK63_9BACT)

HSP 1 Score: 57.0 bits (136), Expect = 1.190e-8
Identity = 31/75 (41.33%), Postives = 47/75 (62.67%), Query Frame = 1 
Query:    1 KPKSDKPFLPLQMRKARRLAGLSQNELADKMDIHRNTIIRWESRVSEPSELQAEVLAQALNQPLEFFYSEPEPPA 225
            +P+    F   ++R+ARR  G SQ ELA+ + +HR T+IRWES +S P+  Q E LA+A+ +  E+F  E   P+
Sbjct:    3 RPRRQSDFQGGRLRQARRELGWSQAELAETLQVHRGTLIRWESNLSAPAPEQEEQLARAMGRTREWFQGEEPTPS 77
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BLAST of mRNA_P-wetherbeei_contig1213.3.1 vs. uniprot
Match: A0A3D5T9G4_9FIRM (XRE family transcriptional regulator n=1 Tax=Lachnospiraceae bacterium TaxID=1898203 RepID=A0A3D5T9G4_9FIRM)

HSP 1 Score: 48.9 bits (115), Expect = 5.520e-6
Identity = 22/60 (36.67%), Postives = 39/60 (65.00%), Query Frame = 1 
Query:   25 LPLQMRKARRLAGLSQNELADKMDIHRNTIIRWESRVSEPSELQAEVLAQALNQPLEFFY 204
            L + +  AR  AG++Q+++A KM + +NTI++WE   SEPS  Q  +L+   + PL++ +
Sbjct:    4 LQISLAAARVNAGMTQDDVAKKMKVSKNTIVKWEKGTSEPSVSQGRMLSDMYSMPLDYIF 63
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1213.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A1E4FK63_9BACT1.190e-841.33HTH cro/C1-type domain-containing protein n=1 Tax=... [more]
A0A3D5T9G4_9FIRM5.520e-636.67XRE family transcriptional regulator n=1 Tax=Lachn... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1213contigP-wetherbeei_contig1213:3312..3536 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog796942.HMPREF9623_01475
PFAMsHTH_3
Model size225
Max annot lvl186801|Clostridia
KEGG koko:K07726
Hectar predicted targeting categoryother localisation
Exons1
Evalue0.000426
EggNOG OGsCOG1476@1|root,COG1476@2|Bacteria,1TP7T@1239|Firmicutes,24G95@186801|Clostridia
DescriptionPsort location CytoplasmicMembrane, score
Cds size225
COG categoryK
BRITEko00000,ko03000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185938.5869846-CDS-P-wetherbeei_contig1213:3311..35361683185938.5869846-CDS-P-wetherbeei_contig1213:3311..3536Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1213 3312..3536 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1213.3.1prot_P-wetherbeei_contig1213.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1213 3312..3536 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1213.3.1

>prot_P-wetherbeei_contig1213.3.1 ID=prot_P-wetherbeei_contig1213.3.1|Name=mRNA_P-wetherbeei_contig1213.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=75bp
KPKSDKPFLPLQMRKARRLAGLSQNELADKMDIHRNTIIRWESRVSEPSE
LQAEVLAQALNQPLEFFYSEPEPPA
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mRNA from alignment at P-wetherbeei_contig1213:3312..3536-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1213.3.1 ID=mRNA_P-wetherbeei_contig1213.3.1|Name=mRNA_P-wetherbeei_contig1213.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=225bp|location=Sequence derived from alignment at P-wetherbeei_contig1213:3312..3536- (Phaeothamnion wetherbeei SAG_119_79)
AAGCCTAAATCCGATAAGCCTTTCCTGCCGTTGCAGATGCGTAAAGCCCG
TCGTTTAGCCGGTTTAAGTCAAAATGAGCTGGCAGACAAGATGGATATTC
ACCGCAACACGATCATCCGCTGGGAATCGAGGGTGAGTGAACCTTCCGAG
CTTCAGGCCGAGGTTCTAGCCCAGGCTTTGAACCAGCCCTTGGAGTTTTT
CTACTCAGAGCCTGAGCCTCCGGCG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1213:3312..3536-

>mRNA_P-wetherbeei_contig1213.3.1 ID=mRNA_P-wetherbeei_contig1213.3.1|Name=mRNA_P-wetherbeei_contig1213.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=225bp|location=Sequence derived from alignment at P-wetherbeei_contig1213:3312..3536- (Phaeothamnion wetherbeei SAG_119_79)
AAGCCTAAATCCGATAAGCCTTTCCTGCCGTTGCAGATGCGTAAAGCCCG
TCGTTTAGCCGGTTTAAGTCAAAATGAGCTGGCAGACAAGATGGATATTC
ACCGCAACACGATCATCCGCTGGGAATCGAGGGTGAGTGAACCTTCCGAG
CTTCAGGCCGAGGTTCTAGCCCAGGCTTTGAACCAGCCCTTGGAGTTTTT
CTACTCAGAGCCTGAGCCTCCGGCG
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