mRNA_P-wetherbeei_contig1212.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1212.2.1
Unique NamemRNA_P-wetherbeei_contig1212.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig1212.2.1 vs. uniprot
Match: D7FVT2_ECTSI (RNase_PH domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FVT2_ECTSI)

HSP 1 Score: 84.7 bits (208), Expect = 1.670e-18
Identity = 43/64 (67.19%), Postives = 51/64 (79.69%), Query Frame = 1 
Query:   25 RSDGRRGNLLRSLYAEQKALHRADGSARFVQGNTSVLVAVYGPAPSKVARRERPDRATVDVTWR 216
            R DGRR N +R L AEQ  L+RADGSARFVQGNTSVL AVYGPAP+K  R ER + AT+DV+++
Sbjct:    5 RRDGRRANQIRPLAAEQGILNRADGSARFVQGNTSVLAAVYGPAPAKSLRMERSEGATLDVSFK 68
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BLAST of mRNA_P-wetherbeei_contig1212.2.1 vs. uniprot
Match: A0A835ZF16_9STRA (Ribosomal protein S5 domain 2-type protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZF16_9STRA)

HSP 1 Score: 82.0 bits (201), Expect = 2.300e-17
Identity = 39/65 (60.00%), Postives = 50/65 (76.92%), Query Frame = 1 
Query:   22 LRSDGRRGNLLRSLYAEQKALHRADGSARFVQGNTSVLVAVYGPAPSKVARRERPDRATVDVTWR 216
            LR DGR G+ +R L+A+Q  L+RADGS RF  GNTSVLVAVYGPA     ++E+PDRA ++V+WR
Sbjct:    5 LRFDGRTGDQIRGLFADQGILNRADGSVRFGAGNTSVLVAVYGPAQPAQQKKEKPDRAIIEVSWR 69
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BLAST of mRNA_P-wetherbeei_contig1212.2.1 vs. uniprot
Match: F0W748_9STRA (Uncharacterized protein AlNc14C28G2677 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0W748_9STRA)

HSP 1 Score: 71.2 bits (173), Expect = 3.140e-13
Identity = 36/65 (55.38%), Postives = 45/65 (69.23%), Query Frame = 1 
Query:   22 LRSDGRRGNLLRSLYAEQKALHRADGSARFVQGNTSVLVAVYGPAPSKVARRERPDRATVDVTWR 216
            LR DGR  N LR + +EQ  LHRADGS+    G+T+VLVAVYGP  +K+AR E  D+A +DV  R
Sbjct:    5 LRDDGRNCNELRQISSEQGTLHRADGSSNLTFGDTTVLVAVYGPGQAKIARNELVDKAAIDVCVR 69
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BLAST of mRNA_P-wetherbeei_contig1212.2.1 vs. uniprot
Match: A0A8K1FJB6_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FJB6_PYTOL)

HSP 1 Score: 69.3 bits (168), Expect = 9.100e-13
Identity = 36/64 (56.25%), Postives = 43/64 (67.19%), Query Frame = 1 
Query:   25 RSDGRRGNLLRSLYAEQKALHRADGSARFVQGNTSVLVAVYGPAPSKVARRERPDRATVDVTWR 216
            R DGR GN LR    +Q AL RADGSAR   GN++VLVAVYGP   K  R E+ DR T+DV ++
Sbjct:    8 RHDGRAGNELRPFACDQGALFRADGSARMSHGNSTVLVAVYGPGQPKSRRNEQVDRVTLDVCFK 71
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BLAST of mRNA_P-wetherbeei_contig1212.2.1 vs. uniprot
Match: A0A7S2VZA9_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2VZA9_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 1.520e-11
Identity = 35/65 (53.85%), Postives = 43/65 (66.15%), Query Frame = 1 
Query:   25 RSDGRRGN-LLRSLYAEQKALHRADGSARFVQGNTSVLVAVYGPAPSKVARRERPDRATVDVTWR 216
            R DGR G   LR L AE   L RADGSA+F  G+T+VL AVYGP   +++ RE PDRA + V W+
Sbjct:   11 RPDGRDGGGKLRPLSAELSTLTRADGSAKFCAGSTTVLAAVYGPVAPRMSNRELPDRAMISVVWK 75
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BLAST of mRNA_P-wetherbeei_contig1212.2.1 vs. uniprot
Match: A0A024GCT1_9STRA (RNase_PH domain-containing protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024GCT1_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 2.650e-11
Identity = 34/62 (54.84%), Postives = 43/62 (69.35%), Query Frame = 1 
Query:   22 LRSDGRRGNLLRSLYAEQKALHRADGSARFVQGNTSVLVAVYGPAPSKVARRERPDRATVDV 207
            LR DGR  N LR + +EQ  L+RADGS+    G+TSVLVAVYGP  +K+ R E  D+A +DV
Sbjct:    2 LRDDGRNCNELRQIASEQGTLNRADGSSNLSIGDTSVLVAVYGPGQAKIVRNELVDKAAIDV 63
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BLAST of mRNA_P-wetherbeei_contig1212.2.1 vs. uniprot
Match: A0A024TBK6_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces TaxID=100860 RepID=A0A024TBK6_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 3.590e-11
Identity = 34/64 (53.12%), Postives = 44/64 (68.75%), Query Frame = 1 
Query:   25 RSDGRRGNLLRSLYAEQKALHRADGSARFVQGNTSVLVAVYGPAPSKVARRERPDRATVDVTWR 216
            R DGR    +R L  EQ  L+RADGSARF  G+TSVL +V GPA +K+ R E+ D ATV+V ++
Sbjct:   10 RDDGRLVQEIRPLSCEQGLLNRADGSARFCHGSTSVLASVNGPAAAKIRRHEKVDAATVEVVFK 73
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BLAST of mRNA_P-wetherbeei_contig1212.2.1 vs. uniprot
Match: A0A1E5W445_9POAL (Exosome complex exonuclease RRP46-like protein n=3 Tax=Panicoideae TaxID=147369 RepID=A0A1E5W445_9POAL)

HSP 1 Score: 62.8 bits (151), Expect = 5.910e-11
Identity = 31/64 (48.44%), Postives = 41/64 (64.06%), Query Frame = 1 
Query:   25 RSDGRRGNLLRSLYAEQKALHRADGSARFVQGNTSVLVAVYGPAPSKVARRERPDRATVDVTWR 216
            R+DGR  N LR        LHRA GSAR+ QG+T VL AVYGP P    + E P++A+++V W+
Sbjct:    6 RADGRNPNQLRPFSCTGNPLHRAHGSARWAQGDTVVLAAVYGPKPG-TRKGENPEKASIEVVWK 68
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BLAST of mRNA_P-wetherbeei_contig1212.2.1 vs. uniprot
Match: A0A1V9ZVY3_9STRA (U4/U6 small nuclear ribonucleoprotein Prp4 n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZVY3_9STRA)

HSP 1 Score: 65.9 bits (159), Expect = 6.990e-11
Identity = 33/64 (51.56%), Postives = 45/64 (70.31%), Query Frame = 1 
Query:   25 RSDGRRGNLLRSLYAEQKALHRADGSARFVQGNTSVLVAVYGPAPSKVARRERPDRATVDVTWR 216
            R DGR    +R L  EQ  L+RADGSARF  G TSV+ +V GPAP+K+ R+E  ++AT+DV ++
Sbjct:  504 REDGRSVQEIRPLACEQGLLNRADGSARFNHGTTSVMASVSGPAPAKIRRQENVNQATLDVVFK 567
[Close]
BLAST of mRNA_P-wetherbeei_contig1212.2.1 vs. uniprot
Match: A0A485KL27_9STRA (Aste57867_8748 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KL27_9STRA)

HSP 1 Score: 64.3 bits (155), Expect = 9.550e-11
Identity = 33/64 (51.56%), Postives = 44/64 (68.75%), Query Frame = 1 
Query:   25 RSDGRRGNLLRSLYAEQKALHRADGSARFVQGNTSVLVAVYGPAPSKVARRERPDRATVDVTWR 216
            R DGR    +R L  EQ  L+RADGSARF  G TSVL +V GPA +K+ R+E+ D AT++V ++
Sbjct:    8 RGDGRLVQEIRPLSCEQGLLNRADGSARFSHGTTSVLASVNGPAAAKIRRQEKVDEATLEVVFK 71
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1212.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FVT2_ECTSI1.670e-1867.19RNase_PH domain-containing protein n=2 Tax=Ectocar... [more]
A0A835ZF16_9STRA2.300e-1760.00Ribosomal protein S5 domain 2-type protein n=1 Tax... [more]
F0W748_9STRA3.140e-1355.38Uncharacterized protein AlNc14C28G2677 n=1 Tax=Alb... [more]
A0A8K1FJB6_PYTOL9.100e-1356.25Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A7S2VZA9_9STRA1.520e-1153.85Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]
A0A024GCT1_9STRA2.650e-1154.84RNase_PH domain-containing protein n=1 Tax=Albugo ... [more]
A0A024TBK6_9STRA3.590e-1153.13Uncharacterized protein n=2 Tax=Aphanomyces TaxID=... [more]
A0A1E5W445_9POAL5.910e-1148.44Exosome complex exonuclease RRP46-like protein n=3... [more]
A0A1V9ZVY3_9STRA6.990e-1151.56U4/U6 small nuclear ribonucleoprotein Prp4 n=1 Tax... [more]
A0A485KL27_9STRA9.550e-1151.56Aste57867_8748 protein n=1 Tax=Aphanomyces stellat... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1212contigP-wetherbeei_contig1212:7399..7614 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FVT2
Preferred nameEXOSC5
PFAMsRNase_PH,RNase_PH_C
Model size216
Max annot lvl2759|Eukaryota
KEGG koko:K12590,ko:K12812
KEGG Pathwayko03013,ko03015,ko03018,ko03040,ko05164,map03013,map03015,map03018,map03040,map05164
KEGG ModuleM00391,M00406,M00430
Hectar predicted targeting categoryother localisation
GOsGO:0000175,GO:0000176,GO:0000177,GO:0000178,GO:0000184,GO:0000288,GO:0000291,GO:0000459,GO:0000460,GO:0000466,GO:0000467,GO:0000469,GO:0000737,GO:0000785,GO:0000956,GO:0002252,GO:0002376,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003723,GO:0003727,GO:0003824,GO:0004518,GO:0004527,GO:0004532,GO:0004536,GO:0004540,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005730,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006304,GO:0006308,GO:0006309,GO:0006364,GO:0006396,GO:0006399,GO:0006401,GO:0006402,GO:0006725,GO:0006807,GO:0006915,GO:0006921,GO:0006950,GO:0006952,GO:0008150,GO:0008152,GO:0008219,GO:0008408,GO:0009056,GO:0009057,GO:0009605,GO:0009607,GO:0009615,GO:0009892,GO:0009893,GO:0009894,GO:0009987,GO:0010467,GO:0010468,GO:0010604,GO:0010605,GO:0010608,GO:0010629,GO:0012501,GO:0016043,GO:0016070,GO:0016071,GO:0016072,GO:0016073,GO:0016074,GO:0016075,GO:0016078,GO:0016180,GO:0016787,GO:0016788,GO:0016796,GO:0016896,GO:0019219,GO:0019222,GO:0019439,GO:0019899,GO:0022411,GO:0022613,GO:0030262,GO:0031123,GO:0031125,GO:0031126,GO:0031323,GO:0031325,GO:0031329,GO:0031974,GO:0031981,GO:0032069,GO:0032070,GO:0032075,GO:0032077,GO:0032991,GO:0034427,GO:0034470,GO:0034472,GO:0034475,GO:0034641,GO:0034655,GO:0034660,GO:0034661,GO:0035327,GO:0042254,GO:0042802,GO:0043085,GO:0043144,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043487,GO:0043488,GO:0043628,GO:0043632,GO:0043633,GO:0043634,GO:0043928,GO:0044085,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045006,GO:0045935,GO:0046483,GO:0046700,GO:0048518,GO:0048519,GO:0048522,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051052,GO:0051054,GO:0051171,GO:0051173,GO:0051252,GO:0051336,GO:0051345,GO:0051607,GO:0051704,GO:0051707,GO:0060255,GO:0061013,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070478,GO:0070481,GO:0070651,GO:0071025,GO:0071027,GO:0071028,GO:0071029,GO:0071035,GO:0071038,GO:0071042,GO:0071046,GO:0071047,GO:0071051,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0090305,GO:0090501,GO:0090503,GO:0097159,GO:0097194,GO:0098542,GO:0140097,GO:0140098,GO:1901360,GO:1901361,GO:1901363,GO:1901575,GO:1902494,GO:1903311,GO:1905354
Exons1
Evalue2.74e-19
EggNOG OGsCOG0689@1|root,KOG1069@2759|Eukaryota
Ec32 ortholog descriptionRrp46 is a component of the exosome 3'->5' exoribonuclease complex, a complex that degrades mRNAs.
Ec32 orthologEc-01_002040.1
EC3.6.4.13
Descriptionpolyadenylation-dependent snoRNA 3'-end processing
Cds size216
COG categoryJ
BRITEko00000,ko00001,ko00002,ko01000,ko03019,ko03041
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185938.4969237-CDS-P-wetherbeei_contig1212:7398..76141683185938.4969237-CDS-P-wetherbeei_contig1212:7398..7614Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1212 7399..7614 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1212.2.1prot_P-wetherbeei_contig1212.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1212 7399..7614 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1212.2.1

>prot_P-wetherbeei_contig1212.2.1 ID=prot_P-wetherbeei_contig1212.2.1|Name=mRNA_P-wetherbeei_contig1212.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=72bp
MQGALSGLRSDGRRGNLLRSLYAEQKALHRADGSARFVQGNTSVLVAVYG
PAPSKVARRERPDRATVDVTWR
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mRNA from alignment at P-wetherbeei_contig1212:7399..7614+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1212.2.1 ID=mRNA_P-wetherbeei_contig1212.2.1|Name=mRNA_P-wetherbeei_contig1212.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=216bp|location=Sequence derived from alignment at P-wetherbeei_contig1212:7399..7614+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCAAGGTGCTTTGAGCGGGCTGCGAAGCGATGGACGGCGTGGCAACCT
TCTGCGTTCGCTTTATGCCGAGCAAAAGGCCCTTCACAGAGCCGACGGCT
CTGCCCGGTTTGTTCAAGGCAACACGTCCGTATTAGTGGCTGTATATGGT
CCCGCGCCGTCCAAGGTCGCACGTCGCGAGCGACCAGACAGGGCAACGGT
AGATGTCACGTGGAGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1212:7399..7614+

>mRNA_P-wetherbeei_contig1212.2.1 ID=mRNA_P-wetherbeei_contig1212.2.1|Name=mRNA_P-wetherbeei_contig1212.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=216bp|location=Sequence derived from alignment at P-wetherbeei_contig1212:7399..7614+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCAAGGTGCTTTGAGCGGGCTGCGAAGCGATGGACGGCGTGGCAACCT
TCTGCGTTCGCTTTATGCCGAGCAAAAGGCCCTTCACAGAGCCGACGGCT
CTGCCCGGTTTGTTCAAGGCAACACGTCCGTATTAGTGGCTGTATATGGT
CCCGCGCCGTCCAAGGTCGCACGTCGCGAGCGACCAGACAGGGCAACGGT
AGATGTCACGTGGAGG
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