mRNA_P-wetherbeei_contig12119.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig12119.2.1
Unique NamemRNA_P-wetherbeei_contig12119.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig12119.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig12119contigP-wetherbeei_contig12119:1199..1934 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size737
Hectar predicted targeting categoryother localisation
Exons1
Cds size378
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185938.332806-CDS-P-wetherbeei_contig12119:1198..15761683185938.332806-CDS-P-wetherbeei_contig12119:1198..1576Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig12119 1199..1576 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185938.3439443-UTR-P-wetherbeei_contig12119:1576..19341683185938.3439443-UTR-P-wetherbeei_contig12119:1576..1934Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig12119 1577..1934 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig12119.2.1prot_P-wetherbeei_contig12119.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig12119 1199..1576 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig12119.2.1

>prot_P-wetherbeei_contig12119.2.1 ID=prot_P-wetherbeei_contig12119.2.1|Name=mRNA_P-wetherbeei_contig12119.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=126bp
MAAAWWRRRRQQRQRRRRRRERAVAVPAASDGNGVVVVRRLPVTTAAATA
VAVPIPPNGGSGCKRRVRTRAANSGREWLRLLYGASSSGDGDEQRSRPGG
YEELVQKRAVSWEQPCSGDVQCSKSN
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mRNA from alignment at P-wetherbeei_contig12119:1199..1934-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig12119.2.1 ID=mRNA_P-wetherbeei_contig12119.2.1|Name=mRNA_P-wetherbeei_contig12119.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=736bp|location=Sequence derived from alignment at P-wetherbeei_contig12119:1199..1934- (Phaeothamnion wetherbeei SAG_119_79)
CAAGAGGAGGAGATCCGCCGCCACCGCCGCCGCGACCGGCACAGGGGGCG
CGAGCAGCCGTGGCAGCGGCGTCGTTAGCGCCGCGAGGGGCCGCGCCCCC
GGCGGGGCGCGTGCGATGGGTAGCACCGCTCCTCGCGGAGACTGCGGCGC
TGCTGCTGGCGGCAGTGGTGGGACAGCGGCCGGGCGGGCCGGCATGCGGC
AGGGCGCCCCCGCCGTCATTAACATTGACGGCGGCAGCGGCGGGGCCGAG
TCTCCTGCTCGAGGTGGCGCCGCCAGCGCGCCGCAGGTCATCGAATTCAT
CGAGCTGTCCGACGACGAATAGACAGAGCTAGATAAGGCTGCTGCTGGTG
CCGCTGCAATGGCGGCAGCGTGGTGGCGGCGGCGGCGGCAGCAGCGACAA
CGGCGGCGGCGGCGGCGGGAGCGAGCGGTGGCGGTGCCGGCGGCCAGTGA
TGGGAACGGGGTGGTGGTGGTGCGGCGGCTGCCGGTGACGACGGCCGCTG
CTACCGCTGTTGCAGTGCCGATACCACCGAATGGCGGCAGCGGCTGCAAA
CGACGAGTGCGAACGAGGGCTGCGAACAGCGGTCGAGAATGGCTGCGGCT
CTTGTACGGCGCCAGCAGCTCTGGCGACGGCGATGAGCAGCGGAGTCGGC
CCGGCGGATATGAAGAACTTGTACAAAAAAGAGCCGTTTCATGGGAGCAG
CCGTGTTCGGGTGACGTTCAGTGTTCAAAGTCTAAT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig12119:1199..1934-

>mRNA_P-wetherbeei_contig12119.2.1 ID=mRNA_P-wetherbeei_contig12119.2.1|Name=mRNA_P-wetherbeei_contig12119.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=378bp|location=Sequence derived from alignment at P-wetherbeei_contig12119:1199..1934- (Phaeothamnion wetherbeei SAG_119_79)
ATGGCGGCAGCGTGGTGGCGGCGGCGGCGGCAGCAGCGACAACGGCGGCG
GCGGCGGCGGGAGCGAGCGGTGGCGGTGCCGGCGGCCAGTGATGGGAACG
GGGTGGTGGTGGTGCGGCGGCTGCCGGTGACGACGGCCGCTGCTACCGCT
GTTGCAGTGCCGATACCACCGAATGGCGGCAGCGGCTGCAAACGACGAGT
GCGAACGAGGGCTGCGAACAGCGGTCGAGAATGGCTGCGGCTCTTGTACG
GCGCCAGCAGCTCTGGCGACGGCGATGAGCAGCGGAGTCGGCCCGGCGGA
TATGAAGAACTTGTACAAAAAAGAGCCGTTTCATGGGAGCAGCCGTGTTC
GGGTGACGTTCAGTGTTCAAAGTCTAAT
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