mRNA_P-wetherbeei_contig12116.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig12116.2.1
Unique NamemRNA_P-wetherbeei_contig12116.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig12116.2.1 vs. uniprot
Match: A0A847GLJ9_9BACT (Uncharacterized protein (Fragment) n=1 Tax=Candidatus Anammoximicrobium sp. TaxID=2699742 RepID=A0A847GLJ9_9BACT)

HSP 1 Score: 70.5 bits (171), Expect = 9.810e-9
Identity = 74/225 (32.89%), Postives = 112/225 (49.78%), Query Frame = 1 
Query: 1318 TVGGGSGNITLKADSLALDSITQSTTG----NVYLLPKTAATAVTIRGTTGGDITPFDLNQTELTNITANRIFVGEDA-TPTVTAGAIALGPSGSGNINIGASXXXXXXXXXXXXXQTLQTSGNVTLKATGAVDGTVIPGVDISAGSLNINAVTGIGSTNQLSTTTGTLAAANTTSGNVDITNGQSLNLGGGSTVSNGGVGSLTVLVTGNDNDLTISNTVSGGGA 1977
            T  GG+ N TLK   LA D+ +Q  +G      +  P  + T      T   D+   D  +     ++ N I  G+   T + T GA ++G   +GN N+G                 LQT+GNV+L A GA+  + + G+D+SA  L  +A TGIGS+  L T   TLAA N+TSGN+ +     L +GG    + GG G++ + V  N  +LT+++ V+  GA
Sbjct: 1332 TFNGGAENATLKDILLAGDTWSQIDSGAAEVTTFTNPTVSLTVNLHNDTDTLDVQGLDSMEPGPNPLSINLIINGDGGDTVSFTTGATSIG---AGNANVGTMGGQPIQTINFNGGW-LQTTGNVSLTAAGAIATSGV-GLDVSANMLTASAATGIGSSLALDTMIATLAATNSTSGNIMVVESNGLIIGGTGVRTFGGNGNIDIDV--NAGNLTVNSAVTAHGA 1549
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BLAST of mRNA_P-wetherbeei_contig12116.2.1 vs. uniprot
Match: UPI00168799FF (CHAT domain-containing protein n=1 Tax=Microcoleus sp. FACHB-68 TaxID=2692826 RepID=UPI00168799FF)

HSP 1 Score: 61.6 bits (148), Expect = 5.360e-6
Identity = 56/161 (34.78%), Postives = 79/161 (49.07%), Query Frame = 1 
Query:  283 GISITGATTLIETAGVGGITLIGNRGNGTSSNDGIAIDLGATVRSTAXXXXXILLSAPGTGTVT--GSGVVGIAVTSGSVVESLNAGGXXXXXXXXXXXGAGIGVDYGVYITGAGSRISSVGGAISATGIGQGTGTDNYGVRVDLGGMIQSTGAGNITING 759
            GI I    T+  TAG G I+L GN     S N GI +   ++  S         +S  GTG+    G+G  GIA+  G++V++   G             AGIG+D    + G  S I +V G I  TG G G G++ +G+ V  GG ++STG GNI + G
Sbjct: 1159 GIEIRSGATVDSTAG-GDISLTGNSTATGSQNHGIILRQYSSTNSGTVQTTGGNISLNGTGSANAIGTGNTGIALYGGALVQTSGIGTVSFEGIAGNSTSAGIGID----VAGINSMIGAVDGDIRLTGTGNG-GSNGFGIEVQNGGAVRSTGVGNIFLTG 1313
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BLAST of mRNA_P-wetherbeei_contig12116.2.1 vs. uniprot
Match: A0A225DW31_9BACT (Putative internalin n=1 Tax=Fimbriiglobus ruber TaxID=1908690 RepID=A0A225DW31_9BACT)

HSP 1 Score: 57.8 bits (138), Expect = 7.200e-5
Identity = 58/202 (28.71%), Postives = 86/202 (42.57%), Query Frame = 1 
Query: 1285 IGITNIGGGAHTVGGGSGNITLKADSLALD--SITQSTTGNVYLLPKTAATAVTIRGT---TGGDITPFDLNQTELTNITANRIFVGEDATPTVTAGAIALGPSGSGNINIGASXXXXXXXXXXXXXQTLQTSGNVTLKATGAVDGTVIPGVDISAGSLNINAVTGIGSTNQ-LSTTTGTLAAANTTSGNVDITNGQSLNLG 1872
            + +  I GGA T       IT+ ADS  +D  S   S TG   + P+T  T + + G    TG  +T   L+  +   ITA  + VG     T+T  A                                 T+  + L   GA+   V  G  ++  +L+++A TGIG+    L+T+ GTLAAAN TSG + +TN     +G
Sbjct:  600 VAVVVIAGGAMTTAATGAPITITADSFTVDDTSAINSGTGTTTIQPRTPGTLIALGGANVLTGPPLT-LGLSTADFARITAGTLVVGSATAGTITVAA---------------------------PLDLTATAPTLDLVTGGAIANGVAAGTALTVPNLSLSAATGIGAPGAPLTTSVGTLAAANATSGGIAVTNAADFTVG 773
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig12116.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A847GLJ9_9BACT9.810e-932.89Uncharacterized protein (Fragment) n=1 Tax=Candida... [more]
UPI00168799FF5.360e-634.78CHAT domain-containing protein n=1 Tax=Microcoleus... [more]
A0A225DW31_9BACT7.200e-528.71Putative internalin n=1 Tax=Fimbriiglobus ruber Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig12116contigP-wetherbeei_contig12116:46..2034 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog113355.CM001775_gene289
PFAMsCHAT,Haemagg_act,PATR
Model size1989
Max annot lvl1117|Cyanobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.32e-05
EggNOG OGsCOG3210@1|root,COG4995@1|root,COG3210@2|Bacteria,COG4995@2|Bacteria,1G08N@1117|Cyanobacteria
Descriptionfilamentous hemagglutinin family N-terminal domain
Cds size1983
COG categoryU
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185938.2714775-CDS-P-wetherbeei_contig12116:45..20281683185938.2714775-CDS-P-wetherbeei_contig12116:45..2028Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig12116 46..2028 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185938.2797794-UTR-P-wetherbeei_contig12116:2028..20341683185938.2797794-UTR-P-wetherbeei_contig12116:2028..2034Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig12116 2029..2034 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig12116.2.1prot_P-wetherbeei_contig12116.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig12116 46..2028 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig12116.2.1

>prot_P-wetherbeei_contig12116.2.1 ID=prot_P-wetherbeei_contig12116.2.1|Name=mRNA_P-wetherbeei_contig12116.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=661bp
MVSGTSIKSNGGNIVLTGGTGFAVSASDGVAGVSLTNANLTAAAGGITVN
GKGFAGTSNNVGVLISGGSQLKADGGISITGTGGAGSATFNHGISITGAT
TLIETAGVGGITLIGNRGNGTSSNDGIAIDLGATVRSTATGTGAILLSAP
GTGTVTGSGVVGIAVTSGSVVESLNAGGGGSTITLNGTGGAGIGVDYGVY
ITGAGSRISSVGGAISATGIGQGTGTDNYGVRVDLGGMIQSTGAGNITIN
GTGSSAGTNTNVGVYLVDAGSKVSSTSTGTIDITGTGGNSSGVQNIGIFV
QTGAKIESTSGAGGTVTLNGTGGNGSTNNWGVAVSGAGSAVNSANGAITV
TGTGGTGIGTDNYGAFIDIGGTVASTGAGNIGITATGKAGAGTGHGLVFG
GAAASSISSTSTGTITVTATGAGAGGIGITNIGGGAHTVGGGSGNITLKA
DSLALDSITQSTTGNVYLLPKTAATAVTIRGTTGGDITPFDLNQTELTNI
TANRIFVGEDATPTVTAGAIALGPSGSGNINIGASNITISGASITAGGQT
LQTSGNVTLKATGAVDGTVIPGVDISAGSLNINAVTGIGSTNQLSTTTGT
LAAANTTSGNVDITNGQSLNLGGGSTVSNGGVGSLTVLVTGNDNDLTISN
TVSGGGAINLS
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mRNA from alignment at P-wetherbeei_contig12116:46..2034-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig12116.2.1 ID=mRNA_P-wetherbeei_contig12116.2.1|Name=mRNA_P-wetherbeei_contig12116.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1989bp|location=Sequence derived from alignment at P-wetherbeei_contig12116:46..2034- (Phaeothamnion wetherbeei SAG_119_79)
ATTTCGATGGTTTCGGGAACGTCGATCAAATCCAACGGCGGCAATATCGT
GTTGACCGGCGGTACCGGCTTTGCAGTCAGCGCCAGCGACGGTGTGGCAG
GCGTGAGCCTCACCAACGCCAATCTCACAGCGGCGGCGGGCGGGATCACG
GTCAACGGCAAAGGTTTTGCTGGCACCAGCAATAACGTCGGCGTTTTGAT
TTCGGGTGGATCGCAGCTGAAAGCCGACGGAGGTATTTCGATTACCGGCA
CTGGCGGTGCGGGTTCAGCAACTTTTAACCACGGGATATCGATTACGGGC
GCCACAACCTTGATCGAAACCGCGGGAGTCGGTGGTATTACGCTCATTGG
CAATCGCGGTAACGGCACCAGCAGCAACGATGGCATCGCGATTGACCTTG
GCGCCACGGTGCGCTCGACCGCTACCGGTACTGGTGCGATTCTTCTCAGC
GCGCCTGGCACTGGAACGGTAACGGGATCCGGCGTTGTCGGCATCGCCGT
GACGAGCGGCTCGGTTGTGGAATCGCTCAACGCGGGTGGCGGCGGCTCGA
CAATTACGCTGAACGGCACTGGTGGCGCGGGTATTGGCGTTGATTACGGT
GTGTATATTACCGGAGCAGGATCACGCATAAGTTCTGTCGGCGGTGCGAT
CAGTGCCACTGGCATAGGTCAAGGCACCGGCACCGACAACTACGGCGTTC
GTGTCGATCTTGGCGGGATGATTCAGTCCACCGGCGCCGGCAACATCACG
ATCAATGGGACCGGCTCCAGTGCTGGTACCAATACGAATGTCGGCGTATA
TCTCGTTGATGCAGGCTCCAAGGTCAGTTCGACTTCGACAGGAACCATCG
ACATAACCGGCACGGGCGGCAACAGTTCCGGTGTGCAGAACATCGGCATT
TTCGTGCAGACCGGCGCGAAGATTGAATCCACGAGCGGCGCGGGCGGAAC
CGTAACTCTCAATGGCACGGGCGGCAACGGCAGCACTAACAACTGGGGAG
TGGCGGTCTCGGGCGCGGGTAGCGCCGTCAACTCCGCGAACGGCGCGATT
ACCGTTACCGGCACCGGTGGAACCGGCATCGGCACCGACAACTACGGCGC
ATTTATCGATATCGGTGGCACGGTGGCATCGACCGGAGCGGGCAATATCG
GGATTACAGCCACGGGCAAAGCGGGTGCGGGAACCGGCCATGGCCTGGTG
TTTGGCGGAGCTGCCGCAAGTTCCATCAGCAGCACGTCAACGGGAACGAT
TACCGTCACCGCTACAGGTGCGGGCGCCGGCGGCATTGGCATTACCAACA
TCGGCGGCGGCGCACATACCGTCGGCGGCGGCTCCGGAAACATCACCCTT
AAAGCGGATAGTCTCGCGTTGGACAGCATCACTCAGTCGACGACAGGGAA
TGTGTACCTGCTGCCAAAGACCGCGGCGACGGCAGTGACGATCCGGGGTA
CCACGGGCGGCGATATCACGCCCTTTGACCTGAACCAGACTGAACTCACC
AACATTACGGCCAACCGAATATTTGTAGGCGAGGATGCTACGCCGACAGT
GACTGCCGGTGCGATCGCGCTCGGACCTTCGGGTTCGGGCAATATCAACA
TCGGCGCCTCTAACATCACCATTTCCGGGGCAAGCATCACGGCGGGCGGC
CAGACGTTGCAGACATCCGGCAACGTCACGCTTAAAGCGACGGGCGCCGT
GGATGGCACCGTCATCCCGGGCGTGGACATCAGTGCCGGCAGCCTCAATA
TCAATGCAGTGACCGGCATCGGCAGCACCAATCAGCTCTCGACCACCACC
GGCACGCTGGCTGCGGCGAACACGACATCCGGCAATGTCGATATTACGAA
CGGCCAGTCGCTTAATCTGGGCGGCGGCAGCACGGTGAGTAACGGCGGCG
TCGGCAGTCTCACGGTCCTGGTTACCGGCAACGACAACGATCTGACTATC
AGCAACACAGTTTCAGGCGGCGGCGCAATCAACCTGTCG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig12116:46..2034-

>mRNA_P-wetherbeei_contig12116.2.1 ID=mRNA_P-wetherbeei_contig12116.2.1|Name=mRNA_P-wetherbeei_contig12116.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1983bp|location=Sequence derived from alignment at P-wetherbeei_contig12116:46..2034- (Phaeothamnion wetherbeei SAG_119_79)
ATGGTTTCGGGAACGTCGATCAAATCCAACGGCGGCAATATCGTGTTGAC
CGGCGGTACCGGCTTTGCAGTCAGCGCCAGCGACGGTGTGGCAGGCGTGA
GCCTCACCAACGCCAATCTCACAGCGGCGGCGGGCGGGATCACGGTCAAC
GGCAAAGGTTTTGCTGGCACCAGCAATAACGTCGGCGTTTTGATTTCGGG
TGGATCGCAGCTGAAAGCCGACGGAGGTATTTCGATTACCGGCACTGGCG
GTGCGGGTTCAGCAACTTTTAACCACGGGATATCGATTACGGGCGCCACA
ACCTTGATCGAAACCGCGGGAGTCGGTGGTATTACGCTCATTGGCAATCG
CGGTAACGGCACCAGCAGCAACGATGGCATCGCGATTGACCTTGGCGCCA
CGGTGCGCTCGACCGCTACCGGTACTGGTGCGATTCTTCTCAGCGCGCCT
GGCACTGGAACGGTAACGGGATCCGGCGTTGTCGGCATCGCCGTGACGAG
CGGCTCGGTTGTGGAATCGCTCAACGCGGGTGGCGGCGGCTCGACAATTA
CGCTGAACGGCACTGGTGGCGCGGGTATTGGCGTTGATTACGGTGTGTAT
ATTACCGGAGCAGGATCACGCATAAGTTCTGTCGGCGGTGCGATCAGTGC
CACTGGCATAGGTCAAGGCACCGGCACCGACAACTACGGCGTTCGTGTCG
ATCTTGGCGGGATGATTCAGTCCACCGGCGCCGGCAACATCACGATCAAT
GGGACCGGCTCCAGTGCTGGTACCAATACGAATGTCGGCGTATATCTCGT
TGATGCAGGCTCCAAGGTCAGTTCGACTTCGACAGGAACCATCGACATAA
CCGGCACGGGCGGCAACAGTTCCGGTGTGCAGAACATCGGCATTTTCGTG
CAGACCGGCGCGAAGATTGAATCCACGAGCGGCGCGGGCGGAACCGTAAC
TCTCAATGGCACGGGCGGCAACGGCAGCACTAACAACTGGGGAGTGGCGG
TCTCGGGCGCGGGTAGCGCCGTCAACTCCGCGAACGGCGCGATTACCGTT
ACCGGCACCGGTGGAACCGGCATCGGCACCGACAACTACGGCGCATTTAT
CGATATCGGTGGCACGGTGGCATCGACCGGAGCGGGCAATATCGGGATTA
CAGCCACGGGCAAAGCGGGTGCGGGAACCGGCCATGGCCTGGTGTTTGGC
GGAGCTGCCGCAAGTTCCATCAGCAGCACGTCAACGGGAACGATTACCGT
CACCGCTACAGGTGCGGGCGCCGGCGGCATTGGCATTACCAACATCGGCG
GCGGCGCACATACCGTCGGCGGCGGCTCCGGAAACATCACCCTTAAAGCG
GATAGTCTCGCGTTGGACAGCATCACTCAGTCGACGACAGGGAATGTGTA
CCTGCTGCCAAAGACCGCGGCGACGGCAGTGACGATCCGGGGTACCACGG
GCGGCGATATCACGCCCTTTGACCTGAACCAGACTGAACTCACCAACATT
ACGGCCAACCGAATATTTGTAGGCGAGGATGCTACGCCGACAGTGACTGC
CGGTGCGATCGCGCTCGGACCTTCGGGTTCGGGCAATATCAACATCGGCG
CCTCTAACATCACCATTTCCGGGGCAAGCATCACGGCGGGCGGCCAGACG
TTGCAGACATCCGGCAACGTCACGCTTAAAGCGACGGGCGCCGTGGATGG
CACCGTCATCCCGGGCGTGGACATCAGTGCCGGCAGCCTCAATATCAATG
CAGTGACCGGCATCGGCAGCACCAATCAGCTCTCGACCACCACCGGCACG
CTGGCTGCGGCGAACACGACATCCGGCAATGTCGATATTACGAACGGCCA
GTCGCTTAATCTGGGCGGCGGCAGCACGGTGAGTAACGGCGGCGTCGGCA
GTCTCACGGTCCTGGTTACCGGCAACGACAACGATCTGACTATCAGCAAC
ACAGTTTCAGGCGGCGGCGCAATCAACCTGTCG
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