mRNA_P-wetherbeei_contig12094.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig12094.1.1
Unique NamemRNA_P-wetherbeei_contig12094.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig12094.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig12094contigP-wetherbeei_contig12094:248..775 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FS10
Model size432
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue3.28e-22
EggNOG OGs2E84P@1|root,2SEN4@2759|Eukaryota
Ec32 ortholog descriptionPDZ domain
Ec32 orthologEc-12_006920.1
Cds size429
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185937.5970695-UTR-P-wetherbeei_contig12094:247..2501683185937.5970695-UTR-P-wetherbeei_contig12094:247..250Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig12094 248..250 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185937.6073751-CDS-P-wetherbeei_contig12094:250..5591683185937.6073751-CDS-P-wetherbeei_contig12094:250..559Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig12094 251..559 +
1683185937.6155663-CDS-P-wetherbeei_contig12094:655..7751683185937.6155663-CDS-P-wetherbeei_contig12094:655..775Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig12094 656..775 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig12094.1.1prot_P-wetherbeei_contig12094.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig12094 251..775 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig12094.1.1

>prot_P-wetherbeei_contig12094.1.1 ID=prot_P-wetherbeei_contig12094.1.1|Name=mRNA_P-wetherbeei_contig12094.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=143bp
MVKGVVVTKYSRSGKGAQRTLFYDDDAAALAWGDPLAGRASYKRSNSLSR
FVKGERETLPLASLLYIRGGDETDPTAPDTAAAATAAAAAAAIAGAGRDA
SPAALLASSFAMVFAERSLEVTASSPDHMRILVRGFRDLQARH
back to top

mRNA from alignment at P-wetherbeei_contig12094:248..775+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig12094.1.1 ID=mRNA_P-wetherbeei_contig12094.1.1|Name=mRNA_P-wetherbeei_contig12094.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=528bp|location=Sequence derived from alignment at P-wetherbeei_contig12094:248..775+ (Phaeothamnion wetherbeei SAG_119_79)
CAGATGGTGAAGGGCGTGGTGGTGACAAAGTACTCGCGCTCGGGCAAGGG
CGCCCAACGCACGCTCTTCTACGACGATGACGCCGCGGCGCTTGCTTGGG
GCGACCCGCTCGCCGGCCGCGCCTCGTACAAGCGTTCCAACTCGCTCTCC
CGCTTCGTCAAGGGCGAGCGCGAGACGCTGCCGCTGGCATCGCTCCTCTA
CATTCGCGGCGGCGACGAGACGGACCCCACGGCGCCCGACACCGCCGCCG
CCGCCACTGCGGCGGCCGCCGCAGCCGCCATCGCCGGCGCAGGCCGCGAC
GCGTCCCCCGCCGTCAGGGAGGAGAGCGGCGCGGGCACGCCGGTGGGTGG
TAGCGGACCGGCACTGTACGGCACGGCGCAGCTGCGAATGTGCTGCGGGG
GCAATGAGGCGCTGCTGGCGTCGAGCTTCGCGATGGTGTTTGCGGAGCGC
AGCCTCGAGGTGACTGCCAGCAGTCCCGACCACATGCGTATCCTCGTGCG
CGGCTTCCGCGACCTCCAGGCGCGCCAC
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig12094:248..775+

>mRNA_P-wetherbeei_contig12094.1.1 ID=mRNA_P-wetherbeei_contig12094.1.1|Name=mRNA_P-wetherbeei_contig12094.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=429bp|location=Sequence derived from alignment at P-wetherbeei_contig12094:248..775+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGTGAAGGGCGTGGTGGTGACAAAGTACTCGCGCTCGGGCAAGGGCGC
CCAACGCACGCTCTTCTACGACGATGACGCCGCGGCGCTTGCTTGGGGCG
ACCCGCTCGCCGGCCGCGCCTCGTACAAGCGTTCCAACTCGCTCTCCCGC
TTCGTCAAGGGCGAGCGCGAGACGCTGCCGCTGGCATCGCTCCTCTACAT
TCGCGGCGGCGACGAGACGGACCCCACGGCGCCCGACACCGCCGCCGCCG
CCACTGCGGCGGCCGCCGCAGCCGCCATCGCCGGCGCAGGCCGCGACGCG
TCCCCCGCCGCGCTGCTGGCGTCGAGCTTCGCGATGGTGTTTGCGGAGCG
CAGCCTCGAGGTGACTGCCAGCAGTCCCGACCACATGCGTATCCTCGTGC
GCGGCTTCCGCGACCTCCAGGCGCGCCAC
back to top