mRNA_P-wetherbeei_contig1208.1.2 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1208.1.2
Unique NamemRNA_P-wetherbeei_contig1208.1.2
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1208.1.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1208contigP-wetherbeei_contig1208:147..1222 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size546
Hectar predicted targeting categoryother localisation
Exons3
Cds size459
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185936.934025-UTR-P-wetherbeei_contig1208:146..2311683185936.934025-UTR-P-wetherbeei_contig1208:146..231Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1208 147..231 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185936.9433916-CDS-P-wetherbeei_contig1208:231..5331683185936.9433916-CDS-P-wetherbeei_contig1208:231..533Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1208 232..533 -
1683185936.952319-CDS-P-wetherbeei_contig1208:843..9151683185936.952319-CDS-P-wetherbeei_contig1208:843..915Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1208 844..915 -
1683185936.9617782-CDS-P-wetherbeei_contig1208:1137..12221683185936.9617782-CDS-P-wetherbeei_contig1208:1137..1222Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1208 1138..1222 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1208.1.2prot_P-wetherbeei_contig1208.1.2Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1208 232..1222 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1208.1.2

>prot_P-wetherbeei_contig1208.1.2 ID=prot_P-wetherbeei_contig1208.1.2|Name=mRNA_P-wetherbeei_contig1208.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=153bp
SSITTPSRSTRVCTPPAGAFFFGVPCFLRADRSGGHHHDSGVGRVEDRPN
DQLSTDRPNPCRRQEFQVGRHGLSLVCFTKTTYWLRGGGGGGGSGDGGDG
GGGDGSDGGDGGLQAIVAAERQVAGVGLFSAATAFAVRQLGRYAGEAKQK
DR*
back to top

mRNA from alignment at P-wetherbeei_contig1208:147..1222-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1208.1.2 ID=mRNA_P-wetherbeei_contig1208.1.2|Name=mRNA_P-wetherbeei_contig1208.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1076bp|location=Sequence derived from alignment at P-wetherbeei_contig1208:147..1222- (Phaeothamnion wetherbeei SAG_119_79)
TCGTCGATTACGACGCCGTCAAGATCAACGCGCGTTTGCACGCCGCCCGC
CGGGGCCTTTTTCTTTGGAGTCCCCTGCTTCTTACGCAAGTTTTTCTGAT
GGTGGCATAGCGGCTGTGCTGTGTGCAGGCCAGTTGTTCTTGAGAATGAG
AACTTTGTCGAGCGTTGCATCTGAAGGGGTATGCTCAACAGGGGAGAGGC
CAAAAGAAGCTTCCGTTTTGACTCTCCACCTCCTTAGCCTTTGAAATCCA
CCAACGAGATTTTTCGACCTTCGGGTTTCGCTTGGCCATCCGTTCCACTT
GTTGCAGGTGCGGACCGCTCCGGTGGCCATCACCATGACTCCGGCGTCGG
GCGCGTGGAAGATCGGCCAAACGATCAGCGTAAGCGTCGCCTAGTCATTG
GTTTTATTTGCATTTGGGCAGCTGTGCCTCTTCCTGTGTCTCTTCTATGC
GCTAGAAGCCAAGCGATATGCAGCCTGCGCTCGCGGCGCTCGTTGTTTTG
TTGAAAGCCTCCTATGCGATCTTTTCCCGCTCGCTGACCTTCTGTCAGCT
GCTTTCCTTTCTTTCCCGCCAATGCCGACACCAAACAGTTTCGCTGCTCT
TCGTTCTCCCCGCCGTCCTCCGCCCCGGTATCCTATCTTTCTATCCCTAT
GTGCCTTTTTGTCGTTGCCGCTGCGGCTGCTGTGAGCAGTATCAACTGAC
CGGCCTAACCCTTGCAGACGTCAAGAGTTCCAAGTGGGACGCCACGGTCT
CTCATTGGTGTGTTTTACGAAAACGACTTACTGGCTGCGTGGTGGTGGTG
GCGGCGGCGGCAGTGGCGATGGCGGTGACGGCGGCGGAGGTGATGGCAGC
GATGGCGGCGATGGCGGGCTGCAGGCGATTGTTGCGGCGGAACGGCAAGT
CGCGGGCGTCGGATTATTTAGCGCCGCCACTGCCTTTGCTGTACGGCAGC
TGGGGCGGTACGCGGGGGAAGCGAAACAAAAGGACCGGTGAAGGGAAATC
CGGAAAAGCAAAGTAATCGATGCGGTGATGCAGCAGACACAACGCAACGC
CCTTCATCGCGCATGCTTACCCGCCG
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig1208:147..1222-

>mRNA_P-wetherbeei_contig1208.1.2 ID=mRNA_P-wetherbeei_contig1208.1.2|Name=mRNA_P-wetherbeei_contig1208.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=459bp|location=Sequence derived from alignment at P-wetherbeei_contig1208:147..1222- (Phaeothamnion wetherbeei SAG_119_79)
TCGTCGATTACGACGCCGTCAAGATCAACGCGCGTTTGCACGCCGCCCGC
CGGGGCCTTTTTCTTTGGAGTCCCCTGCTTCTTACGTGCGGACCGCTCCG
GTGGCCATCACCATGACTCCGGCGTCGGGCGCGTGGAAGATCGGCCAAAC
GATCAGCTATCAACTGACCGGCCTAACCCTTGCAGACGTCAAGAGTTCCA
AGTGGGACGCCACGGTCTCTCATTGGTGTGTTTTACGAAAACGACTTACT
GGCTGCGTGGTGGTGGTGGCGGCGGCGGCAGTGGCGATGGCGGTGACGGC
GGCGGAGGTGATGGCAGCGATGGCGGCGATGGCGGGCTGCAGGCGATTGT
TGCGGCGGAACGGCAAGTCGCGGGCGTCGGATTATTTAGCGCCGCCACTG
CCTTTGCTGTACGGCAGCTGGGGCGGTACGCGGGGGAAGCGAAACAAAAG
GACCGGTGA
back to top