mRNA_P-wetherbeei_contig1205.6.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1205.6.1
Unique NamemRNA_P-wetherbeei_contig1205.6.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig1205.6.1 vs. uniprot
Match: A0A353LN41_9PROT (3-phenylpropionate dioxygenase n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A353LN41_9PROT)

HSP 1 Score: 210 bits (535), Expect = 8.750e-67
Identity = 94/131 (71.76%), Postives = 114/131 (87.02%), Query Frame = 1
Query:   10 PTIELLHEVEQFLYREARLLDAERFEDWLELLTEDIHYWMPSIQNRYRRDKTPAHSPGHMALFDEDLKSLQLRIKRFNTGVAWPEDPPTRHCHVITNIEVELTENPNEYRVYSAFVNHRSRTEQDEETMMG 402
            P  +L+ EVEQFLYREAR+LDAE  E+WL +LTEDIHYWMPSIQNRYR+DK PA S   +ALF+ED+ SL++R++RF TG AWPEDPPTRHCH+ITNIEV LT+NP+EYRVYSAF+NHRSR E+DE+ M+G
Sbjct:   15 PDADLVREVEQFLYREARILDAEELEEWLTMLTEDIHYWMPSIQNRYRKDKQPAFSEETVALFEEDMDSLKIRVRRFYTGFAWPEDPPTRHCHIITNIEVALTDNPDEYRVYSAFLNHRSRLEKDEDWMVG 145          
BLAST of mRNA_P-wetherbeei_contig1205.6.1 vs. uniprot
Match: A0A3C0TU20_9PROT (3-phenylpropionate dioxygenase n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A3C0TU20_9PROT)

HSP 1 Score: 209 bits (533), Expect = 1.230e-66
Identity = 97/134 (72.39%), Postives = 111/134 (82.84%), Query Frame = 1
Query:    1 MTAPTIELLHEVEQFLYREARLLDAERFEDWLELLTEDIHYWMPSIQNRYRRDKTPAHSPGHMALFDEDLKSLQLRIKRFNTGVAWPEDPPTRHCHVITNIEVELTENPNEYRVYSAFVNHRSRTEQDEETMMG 402
            M  P +EL++E+EQFLYREARLLD E +  WL LLTED+HYWMP I NRYRRDKTP H+   MALFDED  SL+LRI+RF TG AWPEDPPTRHCHVITNIEVELT  P+EY VYSAF+NHRSR E+DE+ +MG
Sbjct:    1 MEKPGLELVNEIEQFLYREARLLDNEDYHAWLALLTEDVHYWMPFIDNRYRRDKTPVHNEQAMALFDEDRHSLELRIRRFYTGAAWPEDPPTRHCHVITNIEVELTGRPDEYLVYSAFINHRSRLEKDEDFIMG 134          
BLAST of mRNA_P-wetherbeei_contig1205.6.1 vs. uniprot
Match: A0A3G8GV29_9BURK (3-phenylpropionate/cinnamic acid dioxygenase subunit beta n=6 Tax=Burkholderiales TaxID=80840 RepID=A0A3G8GV29_9BURK)

HSP 1 Score: 170 bits (431), Expect = 3.860e-51
Identity = 79/131 (60.31%), Postives = 99/131 (75.57%), Query Frame = 1
Query:   10 PTIELLHEVEQFLYREARLLDAERFEDWLELLTEDIHYWMPSIQNRYRRDKTPAHSPGHMALFDEDLKSLQLRIKRFNTGVAWPEDPPTRHCHVITNIEVELTENPNEYRVYSAFVNHRSRTEQDEETMMG 402
            P  +L+ EVEQFLYREARLLD ER+++WL L+TED+HYWMP IQ+R+RRDK P   P  MA FD+DL +++ R+ RF    AW EDPPTR CH+I+NIEVELT+ P + RVYSAFVN R R E +E  + G
Sbjct:    3 PPRDLVFEVEQFLYREARLLDDERYQEWLGLMTEDVHYWMPGIQSRHRRDKKPRLDPRRMAFFDDDLLNMRRRVTRFLDPTAWAEDPPTRSCHIISNIEVELTDAPGQCRVYSAFVNCRGRGEAEEYWLSG 133          
BLAST of mRNA_P-wetherbeei_contig1205.6.1 vs. uniprot
Match: UPI000A753170 (3-phenylpropionate/cinnamic acid dioxygenase subunit beta n=1 Tax=Limnohabitans sp. Rim11 TaxID=1100719 RepID=UPI000A753170)

HSP 1 Score: 169 bits (428), Expect = 2.050e-50
Identity = 75/131 (57.25%), Postives = 100/131 (76.34%), Query Frame = 1
Query:   10 PTIELLHEVEQFLYREARLLDAERFEDWLELLTEDIHYWMPSIQNRYRRDKTPAHSPGHMALFDEDLKSLQLRIKRFNTGVAWPEDPPTRHCHVITNIEVELTENPNEYRVYSAFVNHRSRTEQDEETMMG 402
            P++ L+ EV QFLYREAR+LD ER+E+WL ++T+DIHYWMP IQ R+R+DKTP   P  MA FD+D+ +L+ R+ RF    AW EDPPTR CHVI+NIEVE+T+ P+E++ YSAF+N R R E +E  + G
Sbjct:   23 PSMALVFEVSQFLYREARILDEERYEEWLGMMTDDIHYWMPGIQARHRKDKTPRLDPKRMAFFDDDMLNLRRRVTRFMDPTAWAEDPPTRACHVISNIEVEMTDKPDEFKAYSAFINCRGRGEAEEFWLTG 153          
BLAST of mRNA_P-wetherbeei_contig1205.6.1 vs. uniprot
Match: A0A1E4GUR6_9CAUL (Uncharacterized protein n=1 Tax=Phenylobacterium sp. SCN 70-31 TaxID=1660129 RepID=A0A1E4GUR6_9CAUL)

HSP 1 Score: 164 bits (414), Expect = 1.990e-48
Identity = 76/131 (58.02%), Postives = 94/131 (71.76%), Query Frame = 1
Query:   10 PTIELLHEVEQFLYREARLLDAERFEDWLELLTEDIHYWMPSIQNRYRRDKTPAHSPGHMALFDEDLKSLQLRIKRFNTGVAWPEDPPTRHCHVITNIEVELTENPNEYRVYSAFVNHRSRTEQDEETMMG 402
            P  +L+ EVEQFLYREARLLD ER+E+WL L+TEDIHYWMP +Q R+R D +       MA +D+DL +L+ R+ RF    AW EDPPTR CH+I N+EVELT+N  EYRVYS FVN R R E +E  + G
Sbjct:   13 PDRDLVFEVEQFLYREARLLDQERYEEWLGLMTEDIHYWMPGVQARFRNDTSSGPLIERMAFYDDDLLNLRRRVTRFMHATAWAEDPPTRACHIINNVEVELTDNAREYRVYSTFVNCRGRNEAEETWIAG 143          
BLAST of mRNA_P-wetherbeei_contig1205.6.1 vs. uniprot
Match: UPI00191A2084 (3-phenylpropionate/cinnamic acid dioxygenase subunit beta n=1 Tax=Ramlibacter sp. AW1 TaxID=2801330 RepID=UPI00191A2084)

HSP 1 Score: 162 bits (410), Expect = 1.130e-47
Identity = 75/130 (57.69%), Postives = 95/130 (73.08%), Query Frame = 1
Query:   13 TIELLHEVEQFLYREARLLDAERFEDWLELLTEDIHYWMPSIQNRYRRDKTPAHSPGHMALFDEDLKSLQLRIKRFNTGVAWPEDPPTRHCHVITNIEVELTENPNEYRVYSAFVNHRSRTEQDEETMMG 402
            ++EL+ EV+QFLYREARLLD ER+E+WL L+TEDIHYWMP IQ R+RRD  P   P  MA FD+DL +++ R+ RF T  AW EDPPTR CH I+N+EVE    PNE+ V+S F+N R R E +E  + G
Sbjct:   25 SMELVFEVQQFLYREARLLDEERYEEWLGLMTEDIHYWMPGIQARHRRDPAPRLDPRRMAFFDDDLLNMRRRVTRFLTPTAWAEDPPTRACHAISNVEVEPAGAPNEFIVHSTFINTRGRGEAEEYMLSG 154          
BLAST of mRNA_P-wetherbeei_contig1205.6.1 vs. uniprot
Match: A0A521PTV3_9CAUL (3-phenylpropionate/cinnamic acid dioxygenase subunit beta n=2 Tax=Phenylobacterium TaxID=20 RepID=A0A521PTV3_9CAUL)

HSP 1 Score: 159 bits (403), Expect = 9.260e-47
Identity = 74/131 (56.49%), Postives = 91/131 (69.47%), Query Frame = 1
Query:   10 PTIELLHEVEQFLYREARLLDAERFEDWLELLTEDIHYWMPSIQNRYRRDKTPAHSPGHMALFDEDLKSLQLRIKRFNTGVAWPEDPPTRHCHVITNIEVELTENPNEYRVYSAFVNHRSRTEQDEETMMG 402
            P   L+ E+EQFLYREARLLD ER+E+WL LLTED+HYWMP IQ RYR D +       MA +D+DL +L+ R+ RF    AW EDP TR CH+I N+EVELT+   +YRVYS FVN R R E +E  + G
Sbjct:   13 PDPRLVFEIEQFLYREARLLDEERYEEWLGLLTEDVHYWMPGIQARYRNDTSGGPISERMAFYDDDLLNLRRRVTRFMHATAWAEDPATRACHIINNVEVELTDTEGDYRVYSTFVNCRGRNEAEESWLAG 143          
BLAST of mRNA_P-wetherbeei_contig1205.6.1 vs. uniprot
Match: UPI001F5D7178 (3-phenylpropionate/cinnamic acid dioxygenase subunit beta n=1 Tax=Phenylobacterium aquaticum TaxID=1763816 RepID=UPI001F5D7178)

HSP 1 Score: 156 bits (395), Expect = 2.160e-45
Identity = 73/131 (55.73%), Postives = 91/131 (69.47%), Query Frame = 1
Query:   10 PTIELLHEVEQFLYREARLLDAERFEDWLELLTEDIHYWMPSIQNRYRRDKTPAHSPGHMALFDEDLKSLQLRIKRFNTGVAWPEDPPTRHCHVITNIEVELTENPNEYRVYSAFVNHRSRTEQDEETMMG 402
            P  +L+ E+EQFLYREARLLD ER+E+WL L+TED+HYWMP +Q RYR D T       MA +D+DL +L+ R+ RF    AW EDPPTR  H+I N+EVELT    EY+VYS FVN R R E +E  + G
Sbjct:   25 PDRDLVFEIEQFLYREARLLDQERYEEWLGLMTEDVHYWMPGMQARYRNDTTAGPLIERMAFYDDDLLNLRRRVTRFMHATAWAEDPPTRAVHIINNVEVELTAVEGEYQVYSTFVNCRGRNESEENWLAG 155          
BLAST of mRNA_P-wetherbeei_contig1205.6.1 vs. uniprot
Match: A0A7C7S8S7_9GAMM (3-phenylpropionate/cinnamic acid dioxygenase subunit beta n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A7C7S8S7_9GAMM)

HSP 1 Score: 155 bits (392), Expect = 4.560e-45
Identity = 68/130 (52.31%), Postives = 100/130 (76.92%), Query Frame = 1
Query:   16 IELLHEVEQFLYREARLLDAERFEDWLELLTEDIHYWMPSIQNRYRRDKTPAHSP-GHMALFDEDLKSLQLRIKRFNTGVAWPEDPPTRHCHVITNIEVELTENPNEYRVYSAFVNHRSRTEQDEETMMG 402
            +E++ E+EQ LYREAR+LD ER++DW+ ++TED+HY+MP +Q RYRRDKT   +    MA ++++ + L  R+ R  TG AW EDP TR+CH+ITN+EVELT +P+EY VYS F+ +R+R E+DE+ ++G
Sbjct:   17 LEIISELEQTLYREARMLDEERYKDWINMMTEDVHYFMPGLQTRYRRDKTDHQNDLSLMAFYNDNKEELLQRLARLETGTAWSEDPATRYCHLITNVEVELTTDPDEYLVYSNFLAYRNRNERDEDNLIG 146          
BLAST of mRNA_P-wetherbeei_contig1205.6.1 vs. uniprot
Match: A0A829YMS4_9GAMM (Hypothetical biphenyl dioxygenase beta subunit n=1 Tax=Steroidobacter agaridevorans TaxID=2695856 RepID=A0A829YMS4_9GAMM)

HSP 1 Score: 155 bits (391), Expect = 6.860e-45
Identity = 71/129 (55.04%), Postives = 90/129 (69.77%), Query Frame = 1
Query:   16 IELLHEVEQFLYREARLLDAERFEDWLELLTEDIHYWMPSIQNRYRRDKTPAHSPGHMALFDEDLKSLQLRIKRFNTGVAWPEDPPTRHCHVITNIEVELTENPNEYRVYSAFVNHRSRTEQDEETMMG 402
            +EL  E++QFL  EAR LD ER+EDWL +LT DIHYWMP IQ RYR D+    S   MA FD+ L  L++R+ R     AW EDPPTRHCH+ITN+EV+LT   +EYRV+S F N R+R E +E+ + G
Sbjct:   20 MELTFELQQFLLEEARALDEERYEDWLAMLTPDIHYWMPGIQARYRADERRTPSRSAMAFFDDTLDELRVRVARTRQKTAWAEDPPTRHCHIITNVEVQLTATSSEYRVHSCFANVRNRNEVEEQVLYG 148          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1205.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A353LN41_9PROT8.750e-6771.763-phenylpropionate dioxygenase n=1 Tax=Alphaproteo... [more]
A0A3C0TU20_9PROT1.230e-6672.393-phenylpropionate dioxygenase n=1 Tax=Alphaproteo... [more]
A0A3G8GV29_9BURK3.860e-5160.313-phenylpropionate/cinnamic acid dioxygenase subun... [more]
UPI000A7531702.050e-5057.253-phenylpropionate/cinnamic acid dioxygenase subun... [more]
A0A1E4GUR6_9CAUL1.990e-4858.02Uncharacterized protein n=1 Tax=Phenylobacterium s... [more]
UPI00191A20841.130e-4757.693-phenylpropionate/cinnamic acid dioxygenase subun... [more]
A0A521PTV3_9CAUL9.260e-4756.493-phenylpropionate/cinnamic acid dioxygenase subun... [more]
UPI001F5D71782.160e-4555.733-phenylpropionate/cinnamic acid dioxygenase subun... [more]
A0A7C7S8S7_9GAMM4.560e-4552.313-phenylpropionate/cinnamic acid dioxygenase subun... [more]
A0A829YMS4_9GAMM6.860e-4555.04Hypothetical biphenyl dioxygenase beta subunit n=1... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1205contigP-wetherbeei_contig1205:6339..6851 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog1415779.JOMH01000001_gene766
PFAMsRing_hydroxyl_B
Model size514
Max annot lvl1236|Gammaproteobacteria
KEGG rclassRC00098
KEGG koko:K14749
KEGG ReactionR05440
KEGG Pathwayko00642,ko01100,ko01120,ko01220,map00642,map01100,map01120,map01220
Exons1
Evalue2.29e-45
EggNOG OGsCOG5517@1|root,COG5517@2|Bacteria,1RDWV@1224|Proteobacteria,1SB7F@1236|Gammaproteobacteria
DescriptionRing hydroxylating beta subunit
Cds size513
COG categoryQ
BRITEbr01602,ko00000,ko00001,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185936.2026615-CDS-P-wetherbeei_contig1205:6338..68511683185936.2026615-CDS-P-wetherbeei_contig1205:6338..6851Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1205 6339..6851 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1205.6.1prot_P-wetherbeei_contig1205.6.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1205 6339..6851 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1205.6.1

>prot_P-wetherbeei_contig1205.6.1 ID=prot_P-wetherbeei_contig1205.6.1|Name=mRNA_P-wetherbeei_contig1205.6.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=171bp
MTAPTIELLHEVEQFLYREARLLDAERFEDWLELLTEDIHYWMPSIQNRY
RRDKTPAHSPGHMALFDEDLKSLQLRIKRFNTGVAWPEDPPTRHCHVITN
IEVELTENPNEYRVYSAFVNHRSRTEQDEETMMGXXXRGFIAPGRWRTEA
RAAQDHHDTKHDPGEKSECVF
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mRNA from alignment at P-wetherbeei_contig1205:6339..6851+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1205.6.1 ID=mRNA_P-wetherbeei_contig1205.6.1|Name=mRNA_P-wetherbeei_contig1205.6.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=513bp|location=Sequence derived from alignment at P-wetherbeei_contig1205:6339..6851+ (Phaeothamnion wetherbeei SAG_119_79)
ATGACCGCACCAACGATTGAACTGCTGCACGAGGTTGAACAGTTTTTGTA TCGCGAGGCGCGCCTGCTGGACGCTGAGCGGTTTGAGGACTGGCTGGAAC TGCTGACCGAGGACATTCATTACTGGATGCCGTCCATTCAGAACCGTTAC CGGCGCGACAAAACCCCGGCGCATTCTCCCGGCCATATGGCGCTGTTCGA CGAAGATCTGAAAAGCCTGCAATTGCGCATCAAGCGCTTCAACACCGGTG TCGCCTGGCCCGAAGACCCGCCGACACGCCATTGCCATGTCATCACCAAT ATCGAAGTGGAACTGACGGAAAACCCGAACGAATACCGCGTCTATTCCGC ATTCGTGAACCACCGCAGCCGCACCGAACAGGACGAAGAAACCATGATGG GCNNNNNNNNGCGAGGATTTATTGCGCCGGGTCGATGGCGCACTGAAGCT CGCGCGGCGCAAGATCATCACGACACAAAGCACGATCCTGGCGAAAAATC TGAGTGCGTTTTT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1205:6339..6851+

>mRNA_P-wetherbeei_contig1205.6.1 ID=mRNA_P-wetherbeei_contig1205.6.1|Name=mRNA_P-wetherbeei_contig1205.6.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=513bp|location=Sequence derived from alignment at P-wetherbeei_contig1205:6339..6851+ (Phaeothamnion wetherbeei SAG_119_79)
ATGACCGCACCAACGATTGAACTGCTGCACGAGGTTGAACAGTTTTTGTA
TCGCGAGGCGCGCCTGCTGGACGCTGAGCGGTTTGAGGACTGGCTGGAAC
TGCTGACCGAGGACATTCATTACTGGATGCCGTCCATTCAGAACCGTTAC
CGGCGCGACAAAACCCCGGCGCATTCTCCCGGCCATATGGCGCTGTTCGA
CGAAGATCTGAAAAGCCTGCAATTGCGCATCAAGCGCTTCAACACCGGTG
TCGCCTGGCCCGAAGACCCGCCGACACGCCATTGCCATGTCATCACCAAT
ATCGAAGTGGAACTGACGGAAAACCCGAACGAATACCGCGTCTATTCCGC
ATTCGTGAACCACCGCAGCCGCACCGAACAGGACGAAGAAACCATGATGG
GCNNNNNNNNGCGAGGATTTATTGCGCCGGGTCGATGGCGCACTGAAGCT
CGCGCGGCGCAAGATCATCACGACACAAAGCACGATCCTGGCGAAAAATC
TGAGTGCGTTTTT
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